Miyakogusa Predicted Gene

Lj2g3v2338400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2338400.1 Non Chatacterized Hit- tr|C5YQ27|C5YQ27_SORBI
Putative uncharacterized protein Sb08g000570
OS=Sorghu,41.38,1e-18,seg,NULL,CUFF.38861.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07060.1 | Symbols:  | unknown protein; Has 30 Blast hits to ...   122   3e-28

>AT1G07060.1 | Symbols:  | unknown protein; Has 30 Blast hits to 30
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:2167138-2168397 REVERSE LENGTH=233
          Length = 233

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 1   MSEQQLSLLRSLIQTRSFGNATLQFLESLLLSKDVTSSIEVXXXXXXXXXXXXXXVIRSI 60
           M   Q  L  + +Q R F   +L+ LE  L++ +V S +EV              +   +
Sbjct: 31  MIADQTYLFINRVQDRRFDEESLRILELSLVAMNVKSFLEVRSRLRDFMRSESVVIFGEL 90

Query: 61  AAKTLHEKLLVLEFFVRAFALVGDLQSCLALRYEGLVLREIKSASCQWLQVSPVEWLHFV 120
             +++  KL VLEFF RAFAL+GD++SCLA+RYE L LR++KS SC WL VS  EW  F 
Sbjct: 91  TGESMVAKLSVLEFFARAFALLGDMESCLAMRYEALNLRQLKSPSCLWLGVSHSEWTKFA 150

Query: 121 EDAVHNGFHAVAEKACENALSCLANNDVQKTRSDADSENLKDVVSEITRLRNCAMASVAS 180
             ++ NGF ++A KA ENAL  L  + + + +S+ D+ ++ D   ++ RLR+ A +  +S
Sbjct: 151 VQSMENGFPSIAGKASENALLSLKKDSLIEPKSE-DNSDILDAAEKVRRLRDSAASLTSS 209

Query: 181 RS 182
            S
Sbjct: 210 HS 211