Miyakogusa Predicted Gene
- Lj2g3v2326310.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2326310.1 tr|B9MXY2|B9MXY2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_921060 PE=4
SV=1,40.68,8e-16,APO,APO domain; APO_RNA-bind,APO domain; APO3
(ACCUMULATION OF PHOTOSYSTEM ONE 3),NULL; EUKARYOTIC T,CUFF.38856.1
(427 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of un... 468 e-132
AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of un... 468 e-132
AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of un... 296 3e-80
AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of un... 295 4e-80
AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana prot... 287 1e-77
AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of un... 286 1e-77
AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of un... 162 5e-40
>AT5G61930.2 | Symbols: APO3 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr5:24866230-24867665
REVERSE LENGTH=402
Length = 402
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/396 (58%), Positives = 284/396 (71%), Gaps = 32/396 (8%)
Query: 36 VPDDDGLPYFDVPRPRRSKAERKPYVTPMKVLIXXXXXXXXXXXXXPCRVLEEAPENGLL 95
V +D+ Y DVP+P + K+ERKPY TPMK LI PCRVLE+ P+NGLL
Sbjct: 35 VDNDEDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLL 94
Query: 96 VPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLR 155
VPELV+VAH V++ LLSGLS+++ +PV RC C EVHIG GHEIRTCTGP S R
Sbjct: 95 VPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSR 154
Query: 156 SAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKY 215
SA HVW+RG V +V+ FP+CFHLYDR KPRV HDERF+VP+I A++ELCIQAG+DLEK+
Sbjct: 155 SATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKF 214
Query: 216 PTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVN 275
P+KRR+KPVY IEGRI DFE V + G+S L V
Sbjct: 215 PSKRRSKPVYSIEGRIVDFEDVND-----------------GNS-----------ELAVT 246
Query: 276 NISNLDQLSD---EDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPK 332
+ + L Q D E++ L++L +T++SWFEM G +K+ME+Y V CGYCPE+QVGPK
Sbjct: 247 STTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPK 306
Query: 333 GHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVED-LNGPALNNNLKRYYGKAPA 391
GHK+RMCKA+KHQ R+G+HAWQEATIDD+VGP YVWHV D +G L+N+LKR+YGKAPA
Sbjct: 307 GHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPA 366
Query: 392 VVELCVHAGAPIPDQYKSMMRLDVVSPGRDEVDLVA 427
V+E+CV GAP+PDQY SMMRLDVV P RDEVDLVA
Sbjct: 367 VIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402
>AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr5:24866230-24867665
REVERSE LENGTH=402
Length = 402
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/396 (58%), Positives = 284/396 (71%), Gaps = 32/396 (8%)
Query: 36 VPDDDGLPYFDVPRPRRSKAERKPYVTPMKVLIXXXXXXXXXXXXXPCRVLEEAPENGLL 95
V +D+ Y DVP+P + K+ERKPY TPMK LI PCRVLE+ P+NGLL
Sbjct: 35 VDNDEDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLL 94
Query: 96 VPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLR 155
VPELV+VAH V++ LLSGLS+++ +PV RC C EVHIG GHEIRTCTGP S R
Sbjct: 95 VPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSR 154
Query: 156 SAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKY 215
SA HVW+RG V +V+ FP+CFHLYDR KPRV HDERF+VP+I A++ELCIQAG+DLEK+
Sbjct: 155 SATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKF 214
Query: 216 PTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVN 275
P+KRR+KPVY IEGRI DFE V + G+S L V
Sbjct: 215 PSKRRSKPVYSIEGRIVDFEDVND-----------------GNS-----------ELAVT 246
Query: 276 NISNLDQLSD---EDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPK 332
+ + L Q D E++ L++L +T++SWFEM G +K+ME+Y V CGYCPE+QVGPK
Sbjct: 247 STTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGVRKLMERYRVWTCGYCPEIQVGPK 306
Query: 333 GHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVED-LNGPALNNNLKRYYGKAPA 391
GHK+RMCKA+KHQ R+G+HAWQEATIDD+VGP YVWHV D +G L+N+LKR+YGKAPA
Sbjct: 307 GHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPA 366
Query: 392 VVELCVHAGAPIPDQYKSMMRLDVVSPGRDEVDLVA 427
V+E+CV GAP+PDQY SMMRLDVV P RDEVDLVA
Sbjct: 367 VIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402
>AT1G64810.1 | Symbols: APO1 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr1:24086882-24088276
FORWARD LENGTH=436
Length = 436
Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 225/382 (58%), Gaps = 20/382 (5%)
Query: 46 DVPRPRRSKAERKPYVTPMKVLIXXXXXXXXXXXXXPCRVLEEAPENGLLVPELVEVAHR 105
D+P P K ++KPY P K + + L+ P+NGLLVP LV VA +
Sbjct: 75 DLP-PILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLD-PPKNGLLVPNLVPVADQ 132
Query: 106 VYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLRSAMHVWRRGG 165
V + L+ GL+QL+ V+PV C C VH+ VGH IR C GP + R H W +G
Sbjct: 133 VIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGT 192
Query: 166 VRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKYPTKRRTKPVY 225
+ +V+ +H+YD G+ R+ H+ RF RIPA+VELCIQAG+++ +YP +RRT+P+
Sbjct: 193 INDVLIPVESYHMYDPFGR-RIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIR 251
Query: 226 CIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVNNISNLDQLSD 285
+ R+ D +E E + +SS L+ P+ ++ L V ++
Sbjct: 252 MMGKRVIDRGGYHKEPEKPQ------------TSSSLSSPLAELDTLGV-----FERYPP 294
Query: 286 EDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQ 345
+ + ++T+D++ ++ G K+M K+ V CGYC EV VGP GH +++C KHQ
Sbjct: 295 PTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQ 354
Query: 346 SRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPD 405
R+G H WQ+A +D++ PNYVWHV DL G L NL+R+YGKAPA+VE+C+H+GA +P
Sbjct: 355 WRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQ 414
Query: 406 QYKSMMRLDVVSPGRDEVDLVA 427
+YK+MMRLD++ P E D+VA
Sbjct: 415 RYKAMMRLDIIVPDSQEADMVA 436
>AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr1:24086810-24088276
FORWARD LENGTH=460
Length = 460
Score = 295 bits (755), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/382 (39%), Positives = 225/382 (58%), Gaps = 20/382 (5%)
Query: 46 DVPRPRRSKAERKPYVTPMKVLIXXXXXXXXXXXXXPCRVLEEAPENGLLVPELVEVAHR 105
D+P P K ++KPY P K + + L+ P+NGLLVP LV VA +
Sbjct: 99 DLP-PILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLD-PPKNGLLVPNLVPVADQ 156
Query: 106 VYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLRSAMHVWRRGG 165
V + L+ GL+QL+ V+PV C C VH+ VGH IR C GP + R H W +G
Sbjct: 157 VIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGT 216
Query: 166 VRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKYPTKRRTKPVY 225
+ +V+ +H+YD G+ R+ H+ RF RIPA+VELCIQAG+++ +YP +RRT+P+
Sbjct: 217 INDVLIPVESYHMYDPFGR-RIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIR 275
Query: 226 CIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMVNNISNLDQLSD 285
+ R+ D +E E + +SS L+ P+ ++ L V ++
Sbjct: 276 MMGKRVIDRGGYHKEPEKPQ------------TSSSLSSPLAELDTLGV-----FERYPP 318
Query: 286 EDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQ 345
+ + ++T+D++ ++ G K+M K+ V CGYC EV VGP GH +++C KHQ
Sbjct: 319 PTPEDIPKIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQ 378
Query: 346 SRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPD 405
R+G H WQ+A +D++ PNYVWHV DL G L NL+R+YGKAPA+VE+C+H+GA +P
Sbjct: 379 WRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQ 438
Query: 406 QYKSMMRLDVVSPGRDEVDLVA 427
+YK+MMRLD++ P E D+VA
Sbjct: 439 RYKAMMRLDIIVPDSQEADMVA 460
>AT5G57930.1 | Symbols: APO2, emb1629 | Arabidopsis thaliana protein
of unknown function (DUF794) | chr5:23454690-23456354
FORWARD LENGTH=440
Length = 440
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 201/328 (61%), Gaps = 22/328 (6%)
Query: 92 NGLLVPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQ 151
NG++V LV +A++VY A L++ L +L++V+ V CG+C+E+H+G GH ++C GP
Sbjct: 126 NGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPN 185
Query: 152 SRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLD 211
+ R +H W + +VI +HL+DR+GK R+ HDERFS+PR+PA+VELCIQ G++
Sbjct: 186 TSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGK-RIRHDERFSIPRVPAVVELCIQGGVE 244
Query: 212 LEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHN 271
+ ++P KRR KP+ RI E V + DET+ + +
Sbjct: 245 IPEFPAKRRRKPII----RIGKSEFV-DADETELPDPEPQPPPVPLLTEL---------- 289
Query: 272 LMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGP 331
+S + S E+ L +TL +W EM +GA+K+M Y V +CGYCPEV VGP
Sbjct: 290 ----PVSEITPPSSEEETV--SLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGP 343
Query: 332 KGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPA 391
GHK + C A KHQ RNG H WQ A +DDL+ P YVWHV D+NGP + L+ +YG+APA
Sbjct: 344 TGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPA 403
Query: 392 VVELCVHAGAPIPDQYKSMMRLDVVSPG 419
VVE+C AGA +P+ Y++ MRL+V P
Sbjct: 404 VVEICAQAGAVVPEHYRATMRLEVGIPS 431
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%)
Query: 291 LRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQSRNGL 350
L L + ++ + + ++M+ VN CG+C E+ VGP GH + CK R GL
Sbjct: 133 LVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGL 192
Query: 351 HAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPDQYKSM 410
H W + I+D++ P +H+ D G + ++ + + PAVVELC+ G IP+
Sbjct: 193 HEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKR 252
Query: 411 MRLDVVSPGRDE 422
R ++ G+ E
Sbjct: 253 RRKPIIRIGKSE 264
>AT5G57930.2 | Symbols: APO2 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr5:23454690-23456354
FORWARD LENGTH=443
Length = 443
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 201/328 (61%), Gaps = 22/328 (6%)
Query: 92 NGLLVPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQ 151
NG++V LV +A++VY A L++ L +L++V+ V CG+C+E+H+G GH ++C GP
Sbjct: 129 NGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPN 188
Query: 152 SRLRSAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLD 211
+ R +H W + +VI +HL+DR+GK R+ HDERFS+PR+PA+VELCIQ G++
Sbjct: 189 TSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGK-RIRHDERFSIPRVPAVVELCIQGGVE 247
Query: 212 LEKYPTKRRTKPVYCIEGRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHN 271
+ ++P KRR KP+ RI E V + DET+ + +
Sbjct: 248 IPEFPAKRRRKPII----RIGKSEFV-DADETELPDPEPQPPPVPLLTEL---------- 292
Query: 272 LMVNNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGP 331
+S + S E+ L +TL +W EM +GA+K+M Y V +CGYCPEV VGP
Sbjct: 293 ----PVSEITPPSSEEETV--SLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGP 346
Query: 332 KGHKLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPA 391
GHK + C A KHQ RNG H WQ A +DDL+ P YVWHV D+NGP + L+ +YG+APA
Sbjct: 347 TGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPA 406
Query: 392 VVELCVHAGAPIPDQYKSMMRLDVVSPG 419
VVE+C AGA +P+ Y++ MRL+V P
Sbjct: 407 VVEICAQAGAVVPEHYRATMRLEVGIPS 434
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%)
Query: 291 LRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGHKLRMCKASKHQSRNGL 350
L L + ++ + + ++M+ VN CG+C E+ VGP GH + CK R GL
Sbjct: 136 LVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGL 195
Query: 351 HAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHAGAPIPDQYKSM 410
H W + I+D++ P +H+ D G + ++ + + PAVVELC+ G IP+
Sbjct: 196 HEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKR 255
Query: 411 MRLDVVSPGRDE 422
R ++ G+ E
Sbjct: 256 RRKPIIRIGKSE 267
>AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr3:7662542-7663638 REVERSE
LENGTH=337
Length = 337
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 151/318 (47%), Gaps = 53/318 (16%)
Query: 96 VPELVEVAHRVYQAHRTLLSGLSQLVRVIPVLRCGFCDEVHIGFVGHEIRTCTGPQSRLR 155
V E+V VA + A + L+S ++ L++V PVL C FC EV +G GH I TC R
Sbjct: 55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114
Query: 156 SAMHVWRRGGVRNVIFFPRCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKY 215
+ +H W G + +++ +HL++ + + + H ERF R+PAI+ELC QAG
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHN-ISQGVIRHQERFDYDRVPAILELCCQAGA----- 168
Query: 216 PTKRRTKPVYCIE-GRIADFESVAEEDETKRKCSVENLNNFVGSSSILTKPVEKVHNLMV 274
P ++ I D ++EED I + P
Sbjct: 169 -----IHPEEILQYSEIHDNPQISEED-------------------IRSLPA-------- 196
Query: 275 NNISNLDQLSDEDRNKLRDLGRQTLDSWFEMTSGAQKIMEKYVVNMCGYCPEVQVGPKGH 334
L+ +G L +W ++ +G +K++ Y +C C EV VGP GH
Sbjct: 197 --------------GDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGH 242
Query: 335 KLRMCKASKHQSRNGLHAWQEATIDDLVGPNYVWHVEDLNGPALNNNLKRYYGKAPAVVE 394
K R+C K++S G H W++A ++DLV VWH + L + + YYG APA+V
Sbjct: 243 KARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVS 302
Query: 395 LCVHAGAPIPDQYKSMMR 412
LC H GA +P +Y M+
Sbjct: 303 LCSHTGAIVPVKYACKMK 320