Miyakogusa Predicted Gene

Lj2g3v2279590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2279590.1 Non Chatacterized Hit- tr|K4CQ49|K4CQ49_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,71.67,1e-16,CXXU_selWTH: selT/selW/selH selenoprotein
domain,Selenoprotein, Rdx type; Rdx,Selenoprotein, Rdx
typ,CUFF.38791.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58640.1 | Symbols:  | Selenoprotein, Rdx type | chr5:2369799...   251   3e-67
AT5G58640.2 | Symbols:  | Selenoprotein, Rdx type | chr5:2369799...   245   1e-65
AT3G47300.1 | Symbols: SELT | SELT-like protein precursor | chr3...   243   6e-65

>AT5G58640.1 | Symbols:  | Selenoprotein, Rdx type |
           chr5:23697996-23699505 FORWARD LENGTH=228
          Length = 228

 Score =  251 bits (640), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 117/178 (65%), Positives = 145/178 (81%)

Query: 44  AVNPATIQFPSEKTATNIGGVGLGNTVNINYCSSCSYKGTAVTMKNMLEIAFPGTEVVLA 103
           A+ P T+ FPS+KT+   G +G GNTV IN+C SCSYKGTAVTMK MLE AFPG +V+LA
Sbjct: 50  AIIPETLDFPSQKTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILA 109

Query: 104 NYPAPLPKRLLSKVVPVVQLGVIGTVVAGEQIFPMMGFVAPPPWYFNLRANKFGTIATTW 163
           NYP P PKRLL+KVVPVVQ+GVIG +VAG++I PM+G   PP W+ +LRAN+FG++A+TW
Sbjct: 110 NYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTW 169

Query: 164 LLGNTLQSFLQSSGAFEVYLNGELVFSKLKEARFPGEIELKDLISKKMETSRLVHSAS 221
           L+GN LQS+LQSSGAFEV+ NGE VFSKLKE RFPGEIEL+DLISK +    ++  +S
Sbjct: 170 LIGNFLQSYLQSSGAFEVHCNGEPVFSKLKEGRFPGEIELRDLISKTLTRPSILTGSS 227


>AT5G58640.2 | Symbols:  | Selenoprotein, Rdx type |
           chr5:23697996-23699505 FORWARD LENGTH=227
          Length = 227

 Score =  245 bits (626), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/178 (64%), Positives = 143/178 (80%), Gaps = 1/178 (0%)

Query: 44  AVNPATIQFPSEKTATNIGGVGLGNTVNINYCSSCSYKGTAVTMKNMLEIAFPGTEVVLA 103
           A+ P T+ FPS+ +    G +G GNTV IN+C SCSYKGTAVTMK MLE AFPG +V+LA
Sbjct: 50  AIIPETLDFPSQTSGLG-GAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILA 108

Query: 104 NYPAPLPKRLLSKVVPVVQLGVIGTVVAGEQIFPMMGFVAPPPWYFNLRANKFGTIATTW 163
           NYP P PKRLL+KVVPVVQ+GVIG +VAG++I PM+G   PP W+ +LRAN+FG++A+TW
Sbjct: 109 NYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRILPMIGITNPPAWFHSLRANRFGSMASTW 168

Query: 164 LLGNTLQSFLQSSGAFEVYLNGELVFSKLKEARFPGEIELKDLISKKMETSRLVHSAS 221
           L+GN LQS+LQSSGAFEV+ NGE VFSKLKE RFPGEIEL+DLISK +    ++  +S
Sbjct: 169 LIGNFLQSYLQSSGAFEVHCNGEPVFSKLKEGRFPGEIELRDLISKTLTRPSILTGSS 226


>AT3G47300.1 | Symbols: SELT | SELT-like protein precursor |
           chr3:17428685-17429555 REVERSE LENGTH=209
          Length = 209

 Score =  243 bits (621), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 135/163 (82%), Gaps = 4/163 (2%)

Query: 49  TIQFPSEKTATNIGGVGLGNTVNINYCSSCSYKGTAVTMKNMLEIAFPGTEVVLANYPAP 108
           T+ FP++K+     GVG GNTV IN+C SCSYKGTAV+MK MLE  FPG +VVLANYPAP
Sbjct: 42  TLDFPAQKST----GVGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAP 97

Query: 109 LPKRLLSKVVPVVQLGVIGTVVAGEQIFPMMGFVAPPPWYFNLRANKFGTIATTWLLGNT 168
            PKR+L+KVVPV Q+GVIG ++ GEQIFPM+G   PP WY +LRAN+FG++A+TWLLGN 
Sbjct: 98  APKRILAKVVPVAQVGVIGLIMGGEQIFPMIGIAQPPAWYHSLRANRFGSMASTWLLGNF 157

Query: 169 LQSFLQSSGAFEVYLNGELVFSKLKEARFPGEIELKDLISKKM 211
           LQSFLQSSGAFEV  NGELVFSKLKE RFPGEIEL+DLIS  M
Sbjct: 158 LQSFLQSSGAFEVSCNGELVFSKLKEGRFPGEIELRDLISGTM 200