Miyakogusa Predicted Gene
- Lj2g3v2279570.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2279570.2 Non Chatacterized Hit- tr|F6I782|F6I782_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,59.09,0.00000000000004, ,CUFF.38790.2
(253 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07440.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 298 3e-81
AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 273 1e-73
>AT3G07440.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G48530.1); Has 37 Blast hits to 37 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink). | chr3:2381411-2382902 FORWARD
LENGTH=235
Length = 235
Score = 298 bits (762), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 158/247 (63%), Positives = 187/247 (75%), Gaps = 21/247 (8%)
Query: 1 MLSLAKRLQTLKPFLVRGP-HHLRNARTDTGHSRRRPKSPLLALKKPEEKSEWWAVDGEM 59
M + +R+ ++ P + G +R ART+ G RRR K P L LKK EEKSEWW VDGEM
Sbjct: 1 MNFVVRRVGSILPSIRHGGVSQIRLARTEAGQPRRRNKLPSLPLKKKEEKSEWWIVDGEM 60
Query: 60 HEIGDNVPLRERFVIPRENIPNKRRKQLREQFMRRTRLVLKESEHDPWCKRYMELYNELR 119
HEIGD+VP RERF IPR+NIPNKRRKQLR+QFMRRTRLVLKESEH+PWCK+YMELYNELR
Sbjct: 61 HEIGDHVPPRERFTIPRDNIPNKRRKQLRDQFMRRTRLVLKESEHEPWCKKYMELYNELR 120
Query: 120 ENWERLYWDEGFSKKLAQDHANYESAEEDDEDFSPYRNRRSQMEHSKDLNFVRSRQSDTG 179
ENWERLYWDEG+SKKLA DHANYESAEEDDEDF+PYRNRRS + +K
Sbjct: 121 ENWERLYWDEGYSKKLASDHANYESAEEDDEDFNPYRNRRSFSDQTK------------- 167
Query: 180 DQNFGRSRQSDTWEKVNLIRDKFEYDRDRRLREKAFAPMHGGTVPDSHDS-DF-WN---Q 234
+Q F R+ Q D WEKV+ IRDKFEYDR+RR+R+KAFAPM+ P+S +S D WN +
Sbjct: 168 EQGFNRTTQGDNWEKVSQIRDKFEYDRERRMRDKAFAPMNAA--PESQESRDLNWNAQRR 225
Query: 235 PLNTDRY 241
P + DR+
Sbjct: 226 PFDPDRF 232
>AT5G48530.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G07440.1); Has 32 Blast hits to 32
proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr5:19667906-19668781 REVERSE LENGTH=195
Length = 195
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/207 (68%), Positives = 160/207 (77%), Gaps = 14/207 (6%)
Query: 1 MLSLAKRLQTLKPFLVRGPHHLRNARTDTGHSRRRPKSPLLA-LKKPEEKSEWWAVDGEM 59
MLS+A+RL + P L G LR RT+ RRR K P L+ LKK EEKSEWW VDGEM
Sbjct: 1 MLSVARRLGSATPSLQNGASLLRFMRTEASQPRRRNKFPSLSPLKKKEEKSEWWIVDGEM 60
Query: 60 HEIGDNVPLRERFVIPRENIPNKRRKQLREQFMRRTRLVLKESEHDPWCKRYMELYNELR 119
HEIGD+VPLRERF IPR+NIPNKRRKQLREQFMRRTRLVLKESEH+PWCK+YMELYNE+R
Sbjct: 61 HEIGDHVPLRERFTIPRDNIPNKRRKQLREQFMRRTRLVLKESEHEPWCKKYMELYNEVR 120
Query: 120 ENWERLYWDEGFSKKLAQDHANYESAEEDDEDFSPYRNRRSQMEHSKDLNFVRSRQSDTG 179
ENWERLYWDEG+SKK+A+DHANYESAEEDDEDF+PYRNRR + K
Sbjct: 121 ENWERLYWDEGYSKKIARDHANYESAEEDDEDFNPYRNRRPYNDSIKQ------------ 168
Query: 180 DQNFGRSRQS-DTWEKVNLIRDKFEYD 205
+Q F R+ Q D WEKV+ IRDKFEYD
Sbjct: 169 EQGFNRTTQGDDNWEKVSQIRDKFEYD 195