Miyakogusa Predicted Gene

Lj2g3v2277510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2277510.1 Non Chatacterized Hit- tr|F4KGA5|F4KGA5_ARATH
Uncharacterized protein OS=Arabidopsis thaliana
GN=At5,28.21,3e-16,seg,NULL; VARLMGL,NULL,CUFF.38783.1
         (390 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58630.1 | Symbols:  | unknown protein; Has 1807 Blast hits t...    57   2e-08
AT5G01370.1 | Symbols: ACI1 | ALC-interacting protein 1 | chr5:1...    54   2e-07

>AT5G58630.1 | Symbols:  | unknown protein; Has 1807 Blast hits to
           1807 proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:23696141-23697335 REVERSE LENGTH=372
          Length = 372

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 64/146 (43%), Gaps = 29/146 (19%)

Query: 35  GCLTSILHRILCSGALQTHPSDQIIELGSSMSVVSGKVQEFKAMQNTEAANSTKISPGVV 94
           GC++ IL R LCSG   T+PSD I E        S K ++F      E        PG V
Sbjct: 23  GCISIILQRFLCSGTSSTYPSDLITE-------PSFKSRDFIP----EPLRGRGDGPGAV 71

Query: 95  GRLMGLDSMGEVQKXXXXXXXXXXXXXXXXXVDYLG-ECKRMEGLHRRVKXXXXXXXXXE 153
            RLMGLDS+  + K                 V++L  +   ++G HRRVK          
Sbjct: 72  ARLMGLDSIPVIDK--------TRFLSRSHSVNHLKRDDDEIQGKHRRVKSTL------- 116

Query: 154 VPSFHLLENENFLVLSFESGCESKEF 179
              +  LE+++F +LSFE     KE 
Sbjct: 117 --EYVELEDDDFFILSFEKDKNDKEL 140


>AT5G01370.1 | Symbols: ACI1 | ALC-interacting protein 1 |
           chr5:152575-154295 FORWARD LENGTH=427
          Length = 427

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 12/84 (14%)

Query: 30  CNSKSGCLTSILHRILCSGALQTHPSDQIIELGSSMSVV---------SGKVQEFKAMQN 80
            N K+GCLT+++ R+LCSG+ QTHPSD I++   ++ ++           +++     QN
Sbjct: 5   ANPKTGCLTAVVRRLLCSGSQQTHPSDNILDSDETLQLLISYEENEEPKKEIKTETETQN 64

Query: 81  TEAA---NSTKISPGVVGRLMGLD 101
            + +         P VV +LMGLD
Sbjct: 65  DDVSLHPPPPPPPPNVVAKLMGLD 88