Miyakogusa Predicted Gene

Lj2g3v2256260.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2256260.3 tr|G7INU2|G7INU2_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_2g008640 PE=4
S,52.38,2e-19,PIF1,DNA helicase PIF1, ATP-dependent,CUFF.38775.3
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145...    58   2e-09
AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107...    51   3e-07

>AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145
           REVERSE LENGTH=344
          Length = 344

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%)

Query: 52  GNSIIEIPQDLLVEKCDDPFFELVNFAYPNLLQNLKNNKYFQERAILAPTLDSVEEINNF 111
           G + I+I +DLL+ +C DP   +V+  Y        N  ++QERAIL  T D  +EIN++
Sbjct: 78  GETKIDIHEDLLITECKDPIKTIVDEVYGESFTESYNPDFYQERAILCHTNDVADEINDY 137

Query: 112 TLSMIPGEECEYLSCDT 128
            LS + GEE +    DT
Sbjct: 138 MLSQLQGEETKCYGADT 154


>AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107
           REVERSE LENGTH=331
          Length = 331

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 52  GNSIIEIPQDLLVEKCDDPFFELVNFAYPNLLQNLKNNKYFQERAILAPTLDSVEEINNF 111
           G + I+I +DLL+ +  DP   L+   Y        N  +  + AIL    D V++IN++
Sbjct: 77  GETEIDISKDLLITESKDPIKTLLKEVYGEYFAKSYNPDFCHDSAILCHRDDDVDQINDY 136

Query: 112 TLSMIPGEECEYLSCDT 128
            LS++PGEE E LS D+
Sbjct: 137 MLSLLPGEEKECLSTDS 153