Miyakogusa Predicted Gene

Lj2g3v2256250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2256250.1 tr|A9RVV8|A9RVV8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71077
,36.63,0.0000000001,WD40,WD40 repeat; seg,NULL; WD40
repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN,CUFF.38769.1
         (370 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 | chr5:23730...   395   e-110

>AT5G58760.1 | Symbols: DDB2 | damaged DNA binding 2 |
           chr5:23730741-23733606 REVERSE LENGTH=557
          Length = 557

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/298 (63%), Positives = 226/298 (75%), Gaps = 12/298 (4%)

Query: 5   TRRVPFPKVVIERDTDXXXXXXXXXXXXXXXX--XXXXXXXXXXXXNGVAEIGKNEKLEV 62
           +RR   P++VI RDTD                               G  E+ KN+    
Sbjct: 6   SRRKRDPEIVIARDTDSELSSSEEEEEEEDNYPFSESEEEDEAVKNGGKIELEKNKA--- 62

Query: 63  GLDANRKGKTPITLPL-RKVCKVCKKPGHESGFKGATYIDCPMKPCFLCKTPGHTTLTCP 121
                 KGK PIT+ L +KVCKVCK+PGHE+GFKGATYIDCPMKPCFLCK PGHTT++CP
Sbjct: 63  ------KGKAPITVKLIKKVCKVCKQPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCP 116

Query: 122 HRFSTEHGVVPAPRKKTCKPFEYVFERQLRPGIPSIKPKYVIPDQVNCAVIRYHSRRITC 181
           HR  T+HG++P   + T  P ++VF+RQL+P IP IKPKYVIPDQV+CAVIRYHSRR+TC
Sbjct: 117 HRVVTDHGILPTSHRNTKNPIDFVFKRQLQPRIPPIKPKYVIPDQVHCAVIRYHSRRVTC 176

Query: 182 LEFHPTKNNIILSGDKKGQLGVWDFVRVHEKVVYGNIHSCLLNNMKFNPTNDCMVYSASS 241
           LEFHPTKNNI+LSGDKKGQ+GVWDF +V+EK VYGNIHS  +NNM+F+PTND MVYSASS
Sbjct: 177 LEFHPTKNNILLSGDKKGQIGVWDFGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVYSASS 236

Query: 242 DGTISFTDLETGISSSLMNLNPEGWQGPSTWKMLYGMDINSEKGLVLVADNFGFLHLL 299
           DGTI +TDLETG SS+L+NLNP+GWQG ++WKMLYGMDINSEKG+VL ADNFGFLH++
Sbjct: 237 DGTIGYTDLETGTSSTLLNLNPDGWQGANSWKMLYGMDINSEKGVVLAADNFGFLHMI 294