Miyakogusa Predicted Gene
- Lj2g3v2246170.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2246170.1 Non Chatacterized Hit- tr|I1JHC2|I1JHC2_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.49,0,RNA-binding
domain, RBD,NULL; CCCH zinc finger,NULL; RNA-BINDING PROTEIN,NULL; no
description,Nucleo,CUFF.38759.1
(395 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 280 1e-75
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 4e-10
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 62 7e-10
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 62 7e-10
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 62 7e-10
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 62 7e-10
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 62 7e-10
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 2e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 60 2e-09
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 2e-09
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 2e-09
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 3e-09
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 60 4e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 59 4e-09
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 6e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 7e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 7e-09
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 59 7e-09
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 59 8e-09
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 58 1e-08
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 1e-08
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 2e-08
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 57 3e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 4e-08
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 56 4e-08
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 56 4e-08
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 54 1e-07
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 54 1e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 53 3e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 53 3e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 53 3e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 5e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 52 8e-07
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 8e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 52 8e-07
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 51 2e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 51 2e-06
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 51 2e-06
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 50 2e-06
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 50 2e-06
AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) fa... 50 2e-06
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 50 3e-06
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 50 3e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 50 4e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 50 4e-06
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT5G55670.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 7e-06
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 7e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 49 8e-06
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 48 1e-05
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/178 (73%), Positives = 147/178 (82%), Gaps = 1/178 (0%)
Query: 1 MNPLTLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYG 60
MNPLT VK +Q IN++E+ LGI +EASWHAKYK+SAYV++GGIPFDLTEGDLLAVF+QYG
Sbjct: 1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60
Query: 61 EVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHRXXXXXXXX 120
E+VDVNL+RDKGTGKS G+AFLAYEDQRST LAVDNLNGA +LGR I+VDH
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
Query: 121 XXXXXXXQNREARGVCRQFQRGECTRGASCKFSHDEQRAANTGWGREED-NPKWGHDK 177
QNREARGVCR FQRGECTRG SCKFSHDE+RAANTGWG EED + KW HDK
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK 178
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 128 QNREARGVCRQFQRGECTRGASCKFSHDEQRAANTGWGREED-NPKWGHDKFEGPKK 183
+NRE RGVCR FQRGECTRG SCKFSHDE+RAA TGWG EED + KW DK G KK
Sbjct: 178 KNREGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKK 234
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGT-GKSLGYAFLAYEDQRSTNL 92
D V++GG+P+D+TE + VF+ YG V+ V +V D+ GK Y F+ + ++RS +
Sbjct: 5 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKC--YGFVTFSNRRSADD 62
Query: 93 AVDNLNGAQILGRIIRVD 110
A+++++G I GR +RV+
Sbjct: 63 AIEDMDGKSIGGRAVRVN 80
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +FA+YG+VVDV + RD+ TG S G+AF+ Y+ + + A
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 94 VDNLNGAQILGRIIRV 109
V+ L+G + GR I V
Sbjct: 74 VERLDGRVVDGREITV 89
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ + + I F T DL +FA+YG+VVDV + RD+ TG S G+AF+ Y+ + + A
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 94 VDNLNGAQILGRIIRV 109
V+ L+G + GR I V
Sbjct: 74 VERLDGRVVDGREITV 89
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 14 NSKEAALGIGEEAS-WHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKG 72
N A G+G + +K D ++IG +P L + L+ +F+ +GE+V +++D+
Sbjct: 457 NGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRV 516
Query: 73 TGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
TG S GY F+ Y D + N AV +NG + GR + V
Sbjct: 517 TGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 14 NSKEAALGIGEEAS-WHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKG 72
N A G+G + +K D ++IG +P L + L+ +F+ +GE+V +++D+
Sbjct: 457 NGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRV 516
Query: 73 TGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
TG S GY F+ Y D + N AV +NG + GR + V
Sbjct: 517 TGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 14 NSKEAALGIGEEAS-WHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKG 72
N A G+G + +K D ++IG +P L + L+ +F+ +GE+V +++D+
Sbjct: 457 NGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRV 516
Query: 73 TGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
TG S GY F+ Y D + N AV +NG + GR + V
Sbjct: 517 TGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 18 AALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSL 77
AA+G+ AS + D +F+GG+P+ TE + + +G + +LV+D+ TG S
Sbjct: 321 AAVGLTPGASGGLEGPDR--IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 378
Query: 78 GYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
GYAF Y+D T++A LNG ++ + + V
Sbjct: 379 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 410
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
FIGG+ + ++ L F +YG +V+ +V DK +G+S G+ F+ ++++++ + A+ +
Sbjct: 9 CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 98 NGAQILGRIIRVD 110
NG + GR I VD
Sbjct: 69 NGMDLDGRTITVD 81
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 18 AALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSL 77
AA+G+ AS + D +F+GG+P+ TE + + +G + +LV+D+ TG S
Sbjct: 343 AAVGLTPGASGGLEGPDR--IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 78 GYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
GYAF Y+D T++A LNG ++ + + V
Sbjct: 401 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 18 AALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSL 77
AA+G+ AS + D +F+GG+P+ TE + + +G + +LV+D+ TG S
Sbjct: 343 AAVGLTPGASGGLEGPDR--IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 78 GYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
GYAF Y+D T++A LNG ++ + + V
Sbjct: 401 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 18 AALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSL 77
AA+G+ AS + D +F+GG+P+ TE + + +G + +LV+D+ TG S
Sbjct: 343 AAVGLTPGASGGLEGPDR--IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 78 GYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
GYAF Y+D T++A LNG ++ + + V
Sbjct: 401 GYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S+ +FIGG+ + + E L F +YGEVVD ++ D+ TG+S G+ F+ + + + A+
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 95 DNLNGAQILGRIIRVDH 111
L+G + GR+++V++
Sbjct: 99 QALDGRDLHGRVVKVNY 115
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 34 DSAY-VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNL 92
D+A+ +++G +P+D+ G L +F+++G+VVD +V D+ TG+S G+ F+ ++ N+
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 93 AVDNLNGAQILGRIIRVD 110
A+ L+G + GR I+V+
Sbjct: 264 AIAALDGQNLEGRAIKVN 281
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 50/74 (67%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + + DL F+Q+G+V+D ++ D+ +G+S G+ F+ ++D+++ A++ +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 98 NGAQILGRIIRVDH 111
NG ++ GR+I V+
Sbjct: 68 NGKELDGRVITVNE 81
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 50/73 (68%)
Query: 39 FIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLN 98
F+GG+ + + DL F+Q+G+V+D ++ D+ +G+S G+ F+ ++D+++ A++ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 99 GAQILGRIIRVDH 111
G ++ GR+I V+
Sbjct: 69 GKELDGRVITVNE 81
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 50/73 (68%)
Query: 39 FIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLN 98
F+GG+ + + DL F+Q+G+V+D ++ D+ +G+S G+ F+ ++D+++ A++ +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 99 GAQILGRIIRVDH 111
G ++ GR+I V+
Sbjct: 69 GKELDGRVITVNE 81
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+G IP+D TE L + + G VV LV D+ TGK GY F Y+D+ + A NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 98 NGAQILGRIIRVD 110
+I GR +RVD
Sbjct: 71 QSYEINGRQLRVD 83
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 48/73 (65%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+ +D+TE L + F +YG++ + ++ + TG+ G+ F+ + D+R + A+ ++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 98 NGAQILGRIIRVD 110
+G ++ ++I V+
Sbjct: 74 HGRELGNKVISVN 86
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 48/73 (65%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+ +D+TE L + F +YG++ + ++ + TG+ G+ F+ + D+R + A+ ++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 98 NGAQILGRIIRVD 110
+G ++ ++I V+
Sbjct: 74 HGRELGNKVISVN 86
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 5 TLVKRIQNINSKEAALGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVD 64
TL N N A+G+ ++ + D +F+GG+P+ TE + + +G +
Sbjct: 346 TLGPSQPNPNLNLGAVGLSSGSTGGLEGPDR--IFVGGLPYYFTEVQIRELLESFGPLRG 403
Query: 65 VNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRV 109
NLV+D+ TG S GYAF Y+D T++A LNG ++ + + V
Sbjct: 404 FNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTV 448
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 32 YKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
Y+ + V++G +P+D+ G L +F+++G+VV+ +V D+ TG+S G+ F+ D N
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 92 LAVDNLNGAQILGRIIRVD 110
A+ L+G + GR IRV+
Sbjct: 300 EAISALDGQNLEGRAIRVN 318
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+FI G+ F +E L A F +GE+V+V ++ DK + +S GYAFL Y + + A+ +
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 98 NGAQILGRIIRVD 110
NG I G +I VD
Sbjct: 344 NGKIINGWMIVVD 356
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D+ E DL + + GE+ +V L++D+ +G S GYAF+A++ + A++ L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 98 NGAQILGRIIRV 109
+ + G+ IR
Sbjct: 178 HSKEFKGKTIRC 189
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D+ E DL + + GE+ +V L++D+ +G S GYAF+A++ + A++ L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 98 NGAQILGRIIRV 109
+ + G+ IR
Sbjct: 178 HSKEFKGKTIRC 189
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S +FIGG+ + + L FA +G+VVD ++ D+ TG+S G+ F+ + D+ + A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 SEMDGKELNGRHIRVN 109
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D+ E DL + + GE+ +V L++D+ +G S GYAF+A++ + A++ L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 98 NGAQILGRIIRV 109
+ + G+ IR
Sbjct: 158 HSKEFKGKTIRC 169
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 23 GEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFL 82
GEE S HA +A V + G+P+ +T L F++ G V LV +KG+ + G+AF+
Sbjct: 11 GEEKSPHA----AATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFV 66
Query: 83 AYEDQRSTNLAVDNLNGAQILGRIIRV 109
+ Q N A++ NG+ + GR I V
Sbjct: 67 KFALQEDVNRAIELKNGSTVGGRRITV 93
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D TEGDL GEV +V ++R+K +G GYAF+ + + A+D L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 98 NGAQILGRIIRV 109
N G+ I+
Sbjct: 154 NNTDFRGKRIKC 165
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
V++GGIP D TEGDL GEV +V ++R+K +G GYAF+ + + A+D L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 98 NGAQILGRIIRV 109
N G+ I+
Sbjct: 154 NNTDFRGKRIKC 165
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S+ +F+GGI + E L F++YGEVVD ++ D+ TG+S G+AF+ + + A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 95 DNLNGAQILGRIIRVDH 111
L+G + GR IRV++
Sbjct: 93 -QLDGQDLHGRRIRVNY 108
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 52/78 (66%)
Query: 33 KDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNL 92
K+ + +F+GG+ ++T+ DL F+++G+++D ++ ++ TG+S G+ F+ + D+R+ +
Sbjct: 4 KEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Query: 93 AVDNLNGAQILGRIIRVD 110
++ ++G R+I V+
Sbjct: 64 SIREMHGRDFGDRVISVN 81
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + + L FAQYG+V+D ++ D+ TG+S G+ F+ ++D+++ A++ +
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 98 NGAQILGRIIRVD 110
NG + GR I V+
Sbjct: 70 NGQDLDGRSITVN 82
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + + L FAQYG+V+D ++ D+ TG+S G+ F+ ++D+++ A++ +
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 98 NGAQILGRIIRVD 110
NG + GR I V+
Sbjct: 70 NGQDLDGRSITVN 82
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 34 DSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLA 93
D+ +F+ G+P+ TE +L+ F+++G++ +V+LV DK T G AF+ Y S +A
Sbjct: 225 DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
Query: 94 VDNLNGAQILGRIIRV 109
+D L+ GR + +
Sbjct: 285 MDKLDKLPFQGRTLHI 300
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%)
Query: 20 LGIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGY 79
LGIG + + + A +FI IP + + +L A F +G V+ + DK TG S +
Sbjct: 333 LGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCF 392
Query: 80 AFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHR 112
F++Y+ Q + A+D +NG + G+ ++V +
Sbjct: 393 GFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLK 425
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G +P+ +T +L +F + G VVDV +V DK T +S G+ F+ A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 98 NGAQILGRIIRVDH 111
N +QI GR ++V+
Sbjct: 178 NSSQIGGRTVKVNF 191
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S +FIGG+ + + L FA +G+VVD ++ D+ TG+S G+ F+ + D+ + A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 SEMDGKELNGRHIRVN 109
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S +FIGG+ + + L FA +G+VVD ++ D+ TG+S G+ F+ + D+ + A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 SEMDGKELNGRHIRVN 109
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S +FIGG+ + + L FA +G+VVD ++ D+ TG+S G+ F+ + D+ + A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 SEMDGKELNGRHIRVN 109
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 21 GIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYA 80
G +S + A +FI IP + + +L A F +G+V+ + DK TG S +
Sbjct: 324 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383
Query: 81 FLAYEDQRSTNLAVDNLNGAQILGRIIRVDHR 112
F++Y+ Q + A++ +NG Q+ G+ ++V +
Sbjct: 384 FISYDSQAAAQNAINTMNGCQLSGKKLKVQLK 415
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 21 GIGEEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYA 80
G +S + A +FI IP + + +L A F +G+V+ + DK TG S +
Sbjct: 315 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 374
Query: 81 FLAYEDQRSTNLAVDNLNGAQILGRIIRVDHR 112
F++Y+ Q + A++ +NG Q+ G+ ++V +
Sbjct: 375 FISYDSQAAAQNAINTMNGCQLSGKKLKVQLK 406
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+GG+ D+TE DL+ F+ +GEVV V + KG G F+ + +++S A+ NL
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCG------FVQFANRQSAEEAIGNL 382
Query: 98 NGAQILGRIIRV 109
NG I +R+
Sbjct: 383 NGTVIGKNTVRL 394
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S+ +F+GG+ + + L F +GEV + ++ D+ TG+S G+ F+++ + S N A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 KEMDGKELNGRQIRVN 109
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S+ +F+GG+ + + L F +GEV + ++ D+ TG+S G+ F+++ + S N A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 95 DNLNGAQILGRIIRVD 110
++G ++ GR IRV+
Sbjct: 94 KEMDGKELNGRQIRVN 109
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VFIGG+P D+ E DL + + GE+ +V L++D+ +G S GYAF+A++ + A++ L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 98 N 98
+
Sbjct: 178 H 178
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 26 ASWHAKYKDSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLA 83
S H + D+ + +++GG+P+ + L+ F ++GE++ VN+V D+ T +S GY F+
Sbjct: 1 MSHHHQNFDTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVT 60
Query: 84 YEDQRSTNLAVDNLNGAQILGRI 106
++D S A + N I GRI
Sbjct: 61 FKDAESATRACKDPN-PTIEGRI 82
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
S+ +F+ GI F TE L F+QYG+V+ V+++ DK + G+A++ + + A+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 95 DNLNGAQILGRIIRVD 110
LN + GR++ +D
Sbjct: 80 LELNAQLVDGRVVILD 95
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+FIGG+ + + E L F+ +GEV +V + DKG+G+S G+ F+ + ++ A D +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 98 NGAQILGRIIRVDH 111
+G +LGR +R+
Sbjct: 103 DGKGLLGRPLRISF 116
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++ G+ +TE DL FA+ G+V DV+LV D T +S G+ F++ + N + +L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 98 NGAQILGRIIRVD 110
+ + + GR+I V+
Sbjct: 137 DHSVLQGRVITVE 149
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 32 YKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTN 91
Y ++ + + +PF +E L F+ +GE+ +V L++D+ +S GYAF+ + Q
Sbjct: 36 YPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAF 95
Query: 92 LAVDNLNGAQILGRIIRVD 110
LA++ ++ GR+I +D
Sbjct: 96 LAIETMDRRMYNGRMIYID 114
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 45/74 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++GG+ ++ E L A F +G++ DV D+ K + F+ + ++ + A+DN+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 98 NGAQILGRIIRVDH 111
+GA++ GR++ V++
Sbjct: 75 DGAELYGRVLTVNY 88
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDN 96
+F+G + + T DL F Q+G+VVD N+V + G+S GY F+ + D ST A+ N
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+FIGG+ F TE L F++ G+VV+ +V D+ + +S G+ F+ + A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 98 NGAQILGRIIRVDH 111
NG Q+ GR I VD+
Sbjct: 96 NGQQLNGRTIFVDY 109
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+ + ++ +E + F YG + V+LV D+ T K GYAF+ Y R A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 98 NGAQILGRIIRVD 110
+G +I GR + VD
Sbjct: 200 DGQKIDGRRVLVD 212
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
+A +++G + +TEG L FA++ + V L +D +G+SL Y + + ++ NLA+
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 95 DNLNGAQILGRIIRV 109
+ N + + G++IRV
Sbjct: 83 EKKNNSLLNGKMIRV 97
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 51 DLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNLNGAQILGRIIRVD 110
DL +F+++G VV +++RD TG SL YAF+ +E++ S A ++ A I R I VD
Sbjct: 258 DLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVD 317
Query: 111 HRXXXXXXXXXXXXXXXQNREARGVCRQFQRG-------ECTRGASCKF-SHDEQRAANT 162
Q + G F+ G +C G S KF D+ R
Sbjct: 318 FSQSVSKLWSQFRQKDSQKGKGNGC---FKCGSTDHIAKDCVGGPSSKFIVKDQNRQHGG 374
Query: 163 GWGRE 167
G G E
Sbjct: 375 GEGYE 379
>AT5G04600.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1323700-1325486 FORWARD LENGTH=222
Length = 222
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 35 SAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAV 94
+ ++IG IP E ++ A F+Q+G V V + R+K TGKS + F+ +ED +A
Sbjct: 59 ATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 118
Query: 95 DNLNGAQILGRIIRV 109
+N ++ +++V
Sbjct: 119 GAMNDYLLMEHMLKV 133
>AT1G51510.1 | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr1:19103072-19104753 REVERSE
LENGTH=202
Length = 202
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+ + G+ + E D+ F +GE+ ++NL D+ +G GYA + YE + A+ +
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 98 NGAQILGRIIRVD 110
NGA++L + + VD
Sbjct: 157 NGAELLTQNVSVD 169
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G + F++T+ L F Q G VV V + RD T +SLGY ++ + + + A+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 98 NGAQILGRIIRVDH 111
N + G+ IRV +
Sbjct: 98 NYIPLYGKPIRVMY 111
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
VF+GG+ ++ ++ F Q+GE+++ ++ DK TGKS GY F+ + D S AV +
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 98 N 98
N
Sbjct: 79 N 79
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 36 AYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVD 95
A +F+GGI D+ + DL F+Q+GEVV V + KG G F+ + D++S A++
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG------FVQFADRKSAEDAIE 374
Query: 96 NLNGAQILGRIIRV 109
+LNG I +R+
Sbjct: 375 SLNGTVIGKNTVRL 388
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++ G+ F TE L F Q+G ++ +N+V DK + G+AFL YE + A+ +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 98 NGAQILGRIIRVD 110
+G + GR+I V+
Sbjct: 139 HGKFLDGRVIFVE 151
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G + +T+ L F Q G+VV V + RD T +SLGY ++ Y + + A++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 98 NGAQILGRIIRVDH 111
N + GR IRV +
Sbjct: 107 NFMALNGRAIRVMY 120
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G + +T+ L F Q G+VV V + RD T +SLGY ++ Y + + A++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 98 NGAQILGRIIRVDH 111
N + GR IRV +
Sbjct: 107 NFMALNGRAIRVMY 120
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 22 IGEEASWHAKYKDSAY--VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGY 79
+ + + + + + D+ Y VF+GG+ ++ ++ F Q+GE+++ ++ DK TGKS GY
Sbjct: 1 MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60
Query: 80 AFLAYEDQRSTNLAVDNLN 98
F+ + + S AV + N
Sbjct: 61 GFVTFRESDSATRAVADPN 79
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 33 KDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYED 86
D +FIGGI +D E L F+ +GEV+ V ++R+K TG+ G+ F+A+ D
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>AT5G55670.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22544669-22546801 REVERSE LENGTH=585
Length = 585
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 36 AYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVD 95
A++F+G + + T+ +L A +YG V +V +K +GKS GY + + D + + D
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 96 NLNGAQILGRIIRVDH 111
LNG GR V++
Sbjct: 294 ALNGYPFNGRPCVVEY 309
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+F+G + + +T L F + G+VV +V D TG+S GY F+ Y + A+++L
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 98 NGAQILGRIIRVD 110
+G ++ GR IRV+
Sbjct: 239 DGFELEGRAIRVN 251
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 41/61 (67%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
F+GG+ + + DL F+Q+G+V+D ++ D+ +G+S G+ F+ ++D+++ A++ +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 98 N 98
N
Sbjct: 68 N 68
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 24 EEASWHAKYKDSAYVFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLA 83
+E S+ A K +F+G +PF++ L +F G V V ++ DK TG+S G+ F+
Sbjct: 83 KEQSFSADLK----LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
Query: 84 YEDQRSTNLAVDNLNGAQILGRIIRVD 110
A NG ++ GR +RV+
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVN 165
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G + F++T+ L F + +VV V + RD T SLGY ++ Y + A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 98 NGAQILGRIIRVDH 111
N + + G++IR+ +
Sbjct: 108 NYSYLNGKMIRITY 121
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 38 VFIGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSLGYAFLAYEDQRSTNLAVDNL 97
+++G + D+TE DL+ F+ VV V+L R+ TGKS+ YA++ ++ S + A+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 98 NGAQILGRIIRV 109
N + + G+ +R+
Sbjct: 83 NHSDLKGKAMRI 94