Miyakogusa Predicted Gene
- Lj2g3v2220780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2220780.1 tr|Q10KX9|Q10KX9_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os03g25110 PE=2
SV=1,26.76,0.00000000000002,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.38741.1
(536 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 738 0.0
AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 731 0.0
AT4G08810.1 | Symbols: SUB1 | calcium ion binding | chr4:5616204... 440 e-123
AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 82 7e-16
AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 82 9e-16
>AT2G04280.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes -
6 (source: NCBI BLink). | chr2:1480277-1481983 REVERSE
LENGTH=568
Length = 568
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/445 (78%), Positives = 397/445 (89%), Gaps = 5/445 (1%)
Query: 96 PIDCRDPEVFHLMMRATIEKFQDIHFYRFGKPTPGSND-STCDMAWRFRPKEGKAAAFYK 154
PIDC+D +VFHLMMRATI+KF+DIHFY+FGKP G ++CDMAWR+RP++GK+AAFYK
Sbjct: 125 PIDCKDQQVFHLMMRATIDKFKDIHFYKFGKPVTGEEGVNSCDMAWRYRPRDGKSAAFYK 184
Query: 155 DYRRFVIEKSENCTLSVVSIGEYHSGPNARKRKKNQKAGLEKSTQKLDEANALPVVGEFV 214
DYRRFV+ KSENC++SVV IGEYHSG NARKRKKNQKAG EK+ K D+ +LPVVGE V
Sbjct: 185 DYRRFVVAKSENCSVSVVGIGEYHSGLNARKRKKNQKAGFEKTGGKKDDF-SLPVVGELV 243
Query: 215 NDSLP-VFSESSFGQGKYLVYHGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLSICL 273
NDSLP V S+S F GKYLVY GGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDL++CL
Sbjct: 244 NDSLPMVESDSVFKTGKYLVYVGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTLCL 303
Query: 274 SSIYTSSKQDEEGKDFRFYFDFEHLKEAASVLDKEQFWADWNKWQQK--DGMTQHLVEDF 331
SSIYTSS Q+EEGKDFRFYFDFEHLKEAASVLD+ QFWA W K ++K + + HLVEDF
Sbjct: 304 SSIYTSSGQNEEGKDFRFYFDFEHLKEAASVLDEAQFWAQWGKLRKKRRNRLNLHLVEDF 363
Query: 332 RVTPMKLMDVKDALIMRKFGSVEPDNYWYRVCEGETESVVQRPWHLLWKSRRLMDIVSAI 391
RVTPMKL VKD LIMRKFGSVEPDNYWYRVCEG+ ESVV+RPWHLLWKSRRLM+IVSAI
Sbjct: 364 RVTPMKLAAVKDTLIMRKFGSVEPDNYWYRVCEGDAESVVKRPWHLLWKSRRLMEIVSAI 423
Query: 392 ASRLNWDYDSVHVERGEKARNRELWPNLDADTSSDALLSTLRDKVDEGRNLYIATNEPDT 451
ASRLNWDYD+VH+ERGEKARN+E+WPNL+ADTS ALLSTL+DKV+EGR+LYIATNE +
Sbjct: 424 ASRLNWDYDAVHIERGEKARNKEVWPNLEADTSPSALLSTLQDKVEEGRHLYIATNEGEL 483
Query: 452 SFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMRVSIDTEVFLRGK 511
SFF+PLKDKY THFL +YKDLW+E+SEWYSETTKLN G PVEFDGYMR S+DTEVFLRGK
Sbjct: 484 SFFNPLKDKYATHFLYDYKDLWDESSEWYSETTKLNGGNPVEFDGYMRASVDTEVFLRGK 543
Query: 512 KQLETFNDLTSDCKDGINTCNAAAN 536
KQ+ETFNDLT+DCKDG+ TCNAA +
Sbjct: 544 KQIETFNDLTNDCKDGVGTCNAATS 568
>AT4G12700.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G04280.1); Has 136 Blast hits to 136 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes -
11 (source: NCBI BLink). | chr4:7482643-7484328 REVERSE
LENGTH=561
Length = 561
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/444 (77%), Positives = 396/444 (89%), Gaps = 7/444 (1%)
Query: 96 PIDCRDPEVFHLMMRATIEKFQDIHFYRFGKPT--PGSNDSTCDMAWRFRPKEGKAAAFY 153
PIDC+DPEVFHLMM+AT+EKF+D HFY+FGKP GS+ S+CDMAWR+RPK+GKAAAFY
Sbjct: 122 PIDCKDPEVFHLMMKATMEKFKDSHFYKFGKPVIVEGSS-SSCDMAWRYRPKDGKAAAFY 180
Query: 154 KDYRRFVIEKSENCTLSVVSIGEYHSGPNARKRKKNQKAGLEKSTQKLDEANALPVVGEF 213
KDYRRFVIEKS NC++SV+ IGEYHSG NARKRK+ G S+ + ALPVVGE
Sbjct: 181 KDYRRFVIEKSGNCSVSVMGIGEYHSGVNARKRKR---PGFRNSSGGKVDDFALPVVGEA 237
Query: 214 VNDSLPVF-SESSFGQGKYLVYHGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLSIC 272
VNDSLPV SE+ F +G YLVY GGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDL++C
Sbjct: 238 VNDSLPVVESENVFKEGHYLVYSGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMDLTLC 297
Query: 273 LSSIYTSSKQDEEGKDFRFYFDFEHLKEAASVLDKEQFWADWNKWQQKDGMTQHLVEDFR 332
LSS+YT S Q+EEGKDFRFYFDFEHLKEAAS+LD+ QFWADW KW +K+G+ HLVEDFR
Sbjct: 298 LSSVYTLSGQNEEGKDFRFYFDFEHLKEAASMLDQVQFWADWGKWYKKNGLKLHLVEDFR 357
Query: 333 VTPMKLMDVKDALIMRKFGSVEPDNYWYRVCEGETESVVQRPWHLLWKSRRLMDIVSAIA 392
VTPMKL+DVKD LIMRKFG+VEPDNYWYRVCEGETESVVQRPW+LLWKS+RLM+IVSAIA
Sbjct: 358 VTPMKLVDVKDTLIMRKFGTVEPDNYWYRVCEGETESVVQRPWNLLWKSKRLMEIVSAIA 417
Query: 393 SRLNWDYDSVHVERGEKARNRELWPNLDADTSSDALLSTLRDKVDEGRNLYIATNEPDTS 452
SRLNWDYD++H+ERG+KARN+E+WPNL+ DTS ++LSTL+DK+++GRNLYIATNEP+ S
Sbjct: 418 SRLNWDYDAIHIERGDKARNKEVWPNLEKDTSPSSILSTLQDKIEQGRNLYIATNEPELS 477
Query: 453 FFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMRVSIDTEVFLRGKK 512
FF+PLKDKY HFLDE+KDLW+E+SEWYSETTKLN G PVEFDGYMR S+DTEVFLRGKK
Sbjct: 478 FFNPLKDKYKPHFLDEFKDLWDESSEWYSETTKLNGGNPVEFDGYMRASVDTEVFLRGKK 537
Query: 513 QLETFNDLTSDCKDGINTCNAAAN 536
Q+ETFNDLT+DC+DGI TCN AA+
Sbjct: 538 QIETFNDLTNDCRDGIGTCNVAAS 561
>AT4G08810.1 | Symbols: SUB1 | calcium ion binding |
chr4:5616204-5617862 REVERSE LENGTH=552
Length = 552
Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/445 (51%), Positives = 306/445 (68%), Gaps = 13/445 (2%)
Query: 90 CEGSSGPIDCRDPEVFHLMMRATIEKFQDIHFYRFGKPTPGSNDSTCDMAWRFRPKEGKA 149
C+ ++C DP V + R ++ F+ I F + P GS CD++WRFR K+ K+
Sbjct: 118 CDEDLKIVNCSDPRVLVAVERFNLKVFKSIVFLEYETPVNGSKLDECDVSWRFRNKKEKS 177
Query: 150 AAFYKDYRRFVIEKSENCTLSVVSIGEYHSGPNARKRKKNQKAGLEKSTQKLDEANALPV 209
Y+D+RRF ENCT V +HSG NAR+ + ++ + + E
Sbjct: 178 WRRYRDFRRFRFGFGENCTYKVFHTSGWHSGVNARRPRISRPSSSRGARGGDSE------ 231
Query: 210 VGEFVNDSLPVF-SESSFGQGKYLVYHGGGDRCKSMNHFLWSFLCALGEAQYLNRTLVMD 268
+ND++P S++SF +GKYL Y GGD CK MN ++WSFLC LGEA YLNRT VMD
Sbjct: 232 ----INDTIPTLGSQTSFRRGKYLYYSRGGDYCKGMNQYMWSFLCGLGEAMYLNRTFVMD 287
Query: 269 LSICLSSIYTSSKQDEEGKDFRFYFDFEHLKEAASVLDKEQFWADWNKWQQ--KDGMTQH 326
LS+CLSS Y+S +DEEGKDFR+YFDFEHLKE AS++++ +F DW KW + K +
Sbjct: 288 LSLCLSSSYSSKGKDEEGKDFRYYFDFEHLKETASIVEEGEFLRDWKKWNRLHKRKVPVR 347
Query: 327 LVEDFRVTPMKLMDVKDALIMRKFGSVEPDNYWYRVCEGETESVVQRPWHLLWKSRRLMD 386
V+ RV+P++L K +I R+F + EP+NYWYRVCEG+ V+RPWH LWKS+RLM+
Sbjct: 348 KVKTHRVSPLQLSKDKSTIIWRQFDTPEPENYWYRVCEGQASKYVERPWHALWKSKRLMN 407
Query: 387 IVSAIASRLNWDYDSVHVERGEKARNRELWPNLDADTSSDALLSTLRDKVDEGRNLYIAT 446
IVS I+ +++WD+D+VHV RGEKA+N++LWP+LDADT DA+L+ L+ V RNLY+AT
Sbjct: 408 IVSEISGKMDWDFDAVHVVRGEKAKNKKLWPHLDADTWPDAILTKLKGLVQVWRNLYVAT 467
Query: 447 NEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMRVSIDTEV 506
NEP ++FD L+ +Y H LD+Y LW SEWY+ET+ LNNG PVEFDGYMRV++DTEV
Sbjct: 468 NEPFYNYFDKLRSQYKVHLLDDYSYLWGNKSEWYNETSLLNNGKPVEFDGYMRVAVDTEV 527
Query: 507 FLRGKKQLETFNDLTSDCKDGINTC 531
F RGK ++ETF +LT+DCKDGINTC
Sbjct: 528 FYRGKTRVETFYNLTTDCKDGINTC 552
>AT3G56750.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes -
11 (source: NCBI BLink). | chr3:21018326-21020192
REVERSE LENGTH=403
Length = 403
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 62/317 (19%)
Query: 241 CKSMNHFLWSFLCALGEAQYLNRTLVMDLSICLSSIY--------TSSKQDEEG-----K 287
C + H S CAL EA +LNRT VM +C++ I+ + +K EEG
Sbjct: 87 CAGLGHQESSLRCALEEAMFLNRTFVMPSGMCINPIHNKKGILNRSDNKTTEEGWLGSSC 146
Query: 288 DFRFYFDFEHLKEAASV-LDKEQFWADWNKWQQK---------DGMTQHLVEDFRVTPMK 337
+D + + E V LD + W K G+T+H +++ +
Sbjct: 147 AMDSLYDIDLISEKIPVILDDSKTWHIVLSTSMKLGERGIAHVSGVTRHRLKESHYS--- 203
Query: 338 LMDVKDALIMRKFGSVEPDNYWYRVCEGET-ESVVQRPWHLL--WKSRRLMDIVSAIASR 394
+ LI+ + S W+ C+ + S V P+ L + +L + I ++
Sbjct: 204 -----NLLIINRTASPLA---WFVECKDRSNRSAVMLPYSFLPNMAAAKLRNAAEKIKAQ 255
Query: 395 LNWDYDSVHVERGEKARNRE--------LWPNLDADTSSDALLSTLRDKVDEGRNLYIAT 446
L DYD++HV RG+K + R+ +P+LD DT + +L + ++ GR L+I +
Sbjct: 256 LG-DYDAIHVRRGDKLKTRKDRFGVERIQFPHLDRDTRPEFILRRIEKRIPRGRTLFIGS 314
Query: 447 NEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMRVSIDTEV 506
NE FF PL +Y + + ++ + P+ + Y ++ V
Sbjct: 315 NERKPGFFSPLAVRYKLAYSSNFSEILD----------------PIIENNYQLFMMERLV 358
Query: 507 FLRGKKQLETFNDLTSD 523
+ K +TF + +D
Sbjct: 359 MMGAKTYFKTFKEYETD 375
>AT2G41150.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G56750.1);
Has 127 Blast hits to 127 proteins in 16 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117;
Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
| chr2:17153851-17155633 FORWARD LENGTH=404
Length = 404
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 47/310 (15%)
Query: 241 CKSMNHFLWSFLCALGEAQYLNRTLVMDLSICLSSIYTS----SKQDEEGKD-------- 288
C + H S CAL EA +LNRT VM +C++ I+ ++ + E ++
Sbjct: 87 CAGLGHQESSLRCALEEAMFLNRTFVMPSRMCINPIHNKKGILNRSNNETREESWEVSSC 146
Query: 289 -FRFYFDFEHLKEAASV-LDKEQFWADW--NKWQQKDGMTQHLVEDFRVTPMKLMDVKDA 344
+D + + E V LD + W + K+ + H+ R D +
Sbjct: 147 AMESLYDIDLISEKIPVILDDSETWHIMLSTSMKLKERGSAHVYGANRHELNDSSDFTNL 206
Query: 345 LIMRKFGSVEPDNYWYRVCEGE-TESVVQRPWHLL--WKSRRLMDIVSAIASRLNWDYDS 401
L++ + S W+ C+ S V P+ L + RL D I ++L DYD+
Sbjct: 207 LLINRTASPLA---WFVECKDRGNRSDVMLPYSFLQTMAASRLRDAAEKIKAKLG-DYDA 262
Query: 402 VHVERGEKARNRE--------LWPNLDADTSSDALLSTLRDKVDEGRNLYIATNEPDTSF 453
+HV RG+K + R+ +P+LD DT + ++ ++ ++ GR L+I +NE F
Sbjct: 263 IHVRRGDKLKTRKDRFRVERSQFPHLDRDTRPEFIIGRIQKQIPPGRTLFIGSNERTPDF 322
Query: 454 FDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMRVSIDTEVFLRGKKQ 513
F PL +Y + + ++ + P+ + Y ++ + + K
Sbjct: 323 FSPLAIRYKVAYSSNFSEILD----------------PIIENNYQLFMVERLIMMGAKTF 366
Query: 514 LETFNDLTSD 523
+TF + +D
Sbjct: 367 FKTFREYETD 376