Miyakogusa Predicted Gene
- Lj2g3v2195520.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2195520.2 Non Chatacterized Hit- tr|I1JH75|I1JH75_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,73.98,0,DNA-binding domain of DNA mismatch repair MU,DNA mismatch
repair protein MutS, core; ATPase domain o,CUFF.38724.2
(788 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 799 0.0
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 228 1e-59
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 227 3e-59
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 93 8e-19
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 75 2e-13
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 72 2e-12
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 71 3e-12
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 67 4e-11
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 67 4e-11
AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4... 66 8e-11
AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71... 61 4e-09
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/761 (54%), Positives = 542/761 (71%), Gaps = 25/761 (3%)
Query: 35 DSLRVLEWDKLCDLVATFATTSLGRQALKAQLWSVDRTYEESLKLLDETNAAVEMHKHGA 94
DSLRVLEWDKLCD+VA+FA TSLGR+A K +LWS+D+++ ESLKLLDET+AA++M +HG+
Sbjct: 50 DSLRVLEWDKLCDVVASFARTSLGREATKKKLWSLDQSFSESLKLLDETDAAIKMLEHGS 109
Query: 95 CRLHLGHIDALLVKTAIQNARRSIHVTGYEARAIWALLLCADTLQGDLKAAIKQDKDWYG 154
L L I LV++ I++A+R + + +A + +LL + LQ DLKAAIKQD DWY
Sbjct: 110 FCLDLSSIHISLVESGIRHAKRRLSLRADQALEVASLLRFFENLQLDLKAAIKQDGDWYK 169
Query: 155 RFMPLTEVIMEFVINRSLVKAIEQVVDEDGSIKDSASPELKKSRQQVQVLERKIQQLMES 214
RFMPL+E+I+ VINRS VK +EQV+D DG+IKDSAS L++SR++VQ LERK+QQL+++
Sbjct: 170 RFMPLSELIVHPVINRSFVKLVEQVIDPDGTIKDSASSALRQSRERVQTLERKLQQLLDA 229
Query: 215 LVRKERSESSVLEVNNVDGRWCIRVDSGQNTSFKXXXXXXXXXXXXTVEPLSAVPLNDEL 274
++R ++ + SV+ +DGRWCI++ S Q TS EP++AV +ND+L
Sbjct: 230 IIRSQKDDESVMLAAEIDGRWCIQMSSNQLTSVNGLLLSSGSGGGTAAEPIAAVSMNDDL 289
Query: 275 QRARTLVAKAEVDVLLTLTKKMQLDLDDIENTLNSLVQLDVINARATYGLSFRGSSPHIF 334
Q AR VAKAE ++L LT+KMQ L IE L+ +QLDVINARATY ++ G+ P I+
Sbjct: 290 QSARASVAKAEAEILSMLTEKMQDGLCQIEVVLSYSIQLDVINARATYSRAYGGAHPDIY 349
Query: 335 LP---EKNSSSSTEAFLTGNDNSYGPLPNNKEWTLYLPKAYHPLLLQSHRENLQKSK--- 388
LP E S S+ E N S PL + KEW LYLP+ YHPLLL H++ ++K++
Sbjct: 350 LPPEDEVESLSAGENSPDINLPSEKPL-SKKEWLLYLPRCYHPLLLYQHKKGIRKTRETV 408
Query: 389 ---KDANLATSVAPMEKTQPEPVPVDFLVPQKTRVIVITGPNTGGKTICLKTVGLAAMMA 445
K A+ S AP P+P DF + + TRV+VITGPNTGGKTICLK+VGLAAMMA
Sbjct: 409 KFHKTADTVLSGAP-------PIPADFQISKGTRVLVITGPNTGGKTICLKSVGLAAMMA 461
Query: 446 KSGLYVLASESLQIPWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKLHSTSQSLVLLD 505
KSGLYVLA+ES +IPWFD+I+ADIGDEQSL QSLSTFSGHL+QIS I HSTS+SLVLLD
Sbjct: 462 KSGLYVLATESARIPWFDNIYADIGDEQSLLQSLSTFSGHLKQISEILSHSTSRSLVLLD 521
Query: 506 EVGAGTNPXXXXXXXXXXXXXFAQDGCLLTIATTHHGELKTLKYSNEAFENACMEFDEVN 565
EVGAGTNP FA+ G LLT+ATTHHGELKTLKYSN AFENACMEFD++N
Sbjct: 522 EVGAGTNPLEGAALGMAILESFAESGSLLTMATTHHGELKTLKYSNSAFENACMEFDDLN 581
Query: 566 LKPTYKVLWGIPGRSNAINIAERLGLPSVVVDTARKLYGSASAEIDEVIADMEKFKQEYQ 625
LKPTYK+LWG+PGRSNAINIA+RLGLP ++++AR+LYGSASAEI+EVI DME++KQEYQ
Sbjct: 582 LKPTYKILWGVPGRSNAINIADRLGLPCDIIESARELYGSASAEINEVILDMERYKQEYQ 641
Query: 626 ELLAEGRHYLMHSRELHNSLLNTRRKIAEHSTKLRFKKMREVSEAAATARSDIHKKVREM 685
LL E R Y+ SRELH +LL ++ I +HSTK R K +E+++A + RS + + +++
Sbjct: 642 RLLNESRVYIRLSRELHENLLTAQKNINDHSTKERRKMRQELTQAGSMTRSTLRRTLQQF 701
Query: 686 DALAKQASQHKKSIKSSPSSATNSLHTAADNKKPTIADRSASAIKKLNQSSSDRFELPKV 745
+ A ++SQ K AT K RS+S +++ + ++P+V
Sbjct: 702 RSSAGKSSQSK--------VATQLQTKVKTTKDEDNGIRSSSVVERRPLPEAAAQKVPEV 753
Query: 746 GDMVHVASLGKKVTVLKVDSSKGDIVVQAGNMKLKLKVTDI 786
G V V+SLGKK TVLKV+ SK +I+VQ G MK+K+K+TD+
Sbjct: 754 GSSVFVSSLGKKATVLKVEHSKKEILVQVGIMKMKVKLTDV 794
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 226/788 (28%), Positives = 376/788 (47%), Gaps = 104/788 (13%)
Query: 31 SIHDDSLRVLEWDKLCDLVATFATTSLGRQALKAQLWSVDRTYEESLKLLDETNAAV--- 87
S+ + +L VLEW LC+ ++ FA+T++G A K V + EES LL+ET+AA+
Sbjct: 45 SVENQTLEVLEWRALCNQLSPFASTTMGLSATKNAEIPVGNSPEESRNLLNETSAALAAM 104
Query: 88 EMHKHGACRLHLGHIDALLVKTAIQNARRSIHVTGYEARAIWALLLCA-DTLQGDLKAAI 146
EM K L L I L ++ A +T E + + L A T Q KAAI
Sbjct: 105 EMMKSRG--LGLSEIQDL--SDIVERAVSGQLLTVRELCTVRSTLTAATSTFQKLRKAAI 160
Query: 147 KQDKDWYGRFMPLTEVIMEFVINRSLVKAIEQVVDEDGS-IKDSASPELKKSRQQVQVLE 205
+ R PL +++ +L + I +D + + I D AS +L+ R +
Sbjct: 161 SDN-----RVTPLVDILQGCDFKDTLQQKISFCIDCNMTMILDRASEDLEIIRSE----R 211
Query: 206 RKIQQLMESLVRKERSESSVLEVNNVD--------GRWCIRVDSGQNTSFKXXXXXXXXX 257
R+ + ++SL++K + + ++ R C+ + + +
Sbjct: 212 RRNMENLDSLLKK--ISTKIFLAGGINKPLITQRRSRMCVAIRATHKSLLPGGVVLSVSS 269
Query: 258 XXXT--VEPLSAVPLND-ELQRARTLVAKAEVDVLLTLTKKMQLDLDDIENTLNSLVQLD 314
T +EP AV LN+ E++ A + A+ E+ +L LT ++ + +I + L+ +++LD
Sbjct: 270 SRATCFIEPKEAVELNNMEVRHANSEKAE-EMAILSILTSEVVMAQREILHLLDRILELD 328
Query: 315 VINARATYGLSFRGSSPHIFLPEKNSSSSTEAFLTGNDNSYGPLPNNKEWTLYLPKAYHP 374
+ ARA++ G P++ + + T D+ A HP
Sbjct: 329 IAFARASHANWINGVYPNV----TSEHTKTPGLAVDIDS-----------------AQHP 367
Query: 375 LLLQSHRENLQKSKKDANLATSVAPMEKTQPEPVPVDFLVPQKTRVIVITGPNTGGKTIC 434
LLL S + S ++ PVPVD V +V+VI+GPNTGGKT
Sbjct: 368 LLLGS----VLGSPNGGDIF------------PVPVDIKVESSAKVVVISGPNTGGKTAL 411
Query: 435 LKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKL 494
LKT+GL ++M+KSG+Y+ A ++PWFD I ADIGD QSL QSLSTFSGH+ +I I
Sbjct: 412 LKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQILD 471
Query: 495 HSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLTIATTHHGELKTLKYSNEAF 554
++ SLVLLDE+ +GT+P + ++ + + +TH+G+L LK + F
Sbjct: 472 IASENSLVLLDEICSGTDP-SEGVALATSILQYIKNRVNVAVVSTHYGDLSRLKDNEPRF 530
Query: 555 ENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVVDTARKLYGSASAEIDEVI 614
+NA MEF L+PT++VLWG G SNA+ +A+ +G +++ A K + E
Sbjct: 531 QNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEKLNPE----- 585
Query: 615 ADMEKFKQEYQELLAEGRHYLMHSRE---LHNSLLNTRRKIAEHST--------KLRFKK 663
D+E+ +Q L+ E + + + H L+N ++ EH + L K+
Sbjct: 586 QDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHEL-EHESHDLDKRERALLKKE 644
Query: 664 MREVSEAAATARSDIHKKVREMDALAK--QASQHKKSIKSSPSSATNSLHTAADNKKPTI 721
++V E +A+S + + V E ++ + QA Q+ I + + + P
Sbjct: 645 TQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSLILKTEEAVAEIIEACC----PMD 700
Query: 722 ADRSASAIKKLNQSSSDRFELPKVGDMVHVASLGKKV-TVLKVDSSKGD-IVVQAGNMKL 779
D L + SD P+ G+ V V LG K+ TV++ D ++VQ G +++
Sbjct: 701 PD-------SLEEEYSDYS--PQAGEKVLVTGLGDKLGTVVEEPGDDDDTVLVQHGKIRV 751
Query: 780 KLKVTDIQ 787
++K DI+
Sbjct: 752 RIKKKDIK 759
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 226/788 (28%), Positives = 376/788 (47%), Gaps = 104/788 (13%)
Query: 31 SIHDDSLRVLEWDKLCDLVATFATTSLGRQALKAQLWSVDRTYEESLKLLDETNAAV--- 87
S+ + +L VLEW LC+ ++ FA+T++G A K V + EES LL+ET+AA+
Sbjct: 45 SVENQTLEVLEWRALCNQLSPFASTTMGLSATKNAEIPVGNSPEESRNLLNETSAALAAM 104
Query: 88 EMHKHGACRLHLGHIDALLVKTAIQNARRSIHVTGYEARAIWALLLCA-DTLQGDLKAAI 146
EM K L L I L ++ A +T E + + L A T Q KAAI
Sbjct: 105 EMMKSRG--LGLSEIQDL--SDIVERAVSGQLLTVRELCTVRSTLTAATSTFQKLRKAAI 160
Query: 147 KQDKDWYGRFMPLTEVIMEFVINRSLVKAIEQVVDEDGS-IKDSASPELKKSRQQVQVLE 205
+ R PL +++ +L + I +D + + I D AS +L+ R +
Sbjct: 161 SDN-----RVTPLVDILQGCDFKDTLQQKISFCIDCNMTMILDRASEDLEIIRSE----R 211
Query: 206 RKIQQLMESLVRKERSESSVLEVNNVD--------GRWCIRVDSGQNTSFKXXXXXXXXX 257
R+ + ++SL++K + + ++ R C+ + + +
Sbjct: 212 RRNMENLDSLLKK--ISTKIFLAGGINKPLITQRRSRMCVAIRATHKSLLPGGVVLSVSS 269
Query: 258 XXXT--VEPLSAVPLND-ELQRARTLVAKAEVDVLLTLTKKMQLDLDDIENTLNSLVQLD 314
T +EP AV LN+ E++ A + A+ E+ +L LT ++ + +I + L+ +++LD
Sbjct: 270 SRATCFIEPKEAVELNNMEVRHANSEKAE-EMAILSILTSEVVMAQREILHLLDRILELD 328
Query: 315 VINARATYGLSFRGSSPHIFLPEKNSSSSTEAFLTGNDNSYGPLPNNKEWTLYLPKAYHP 374
+ ARA++ G P++ + + T D+ A HP
Sbjct: 329 IAFARASHANWINGVYPNV----TSEHTKTPGLAVDIDS-----------------AQHP 367
Query: 375 LLLQSHRENLQKSKKDANLATSVAPMEKTQPEPVPVDFLVPQKTRVIVITGPNTGGKTIC 434
LLL S + S ++ PVPVD V +V+VI+GPNTGGKT
Sbjct: 368 LLLGS----VLGSPNGGDIF------------PVPVDIKVESSAKVVVISGPNTGGKTAL 411
Query: 435 LKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKL 494
LKT+GL ++M+KSG+Y+ A ++PWFD I ADIGD QSL QSLSTFSGH+ +I I
Sbjct: 412 LKTLGLLSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQILD 471
Query: 495 HSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLTIATTHHGELKTLKYSNEAF 554
++ SLVLLDE+ +GT+P + ++ + + +TH+G+L LK + F
Sbjct: 472 IASENSLVLLDEICSGTDP-SEGVALATSILQYIKNRVNVAVVSTHYGDLSRLKDNEPRF 530
Query: 555 ENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVVDTARKLYGSASAEIDEVI 614
+NA MEF L+PT++VLWG G SNA+ +A+ +G +++ A K + E
Sbjct: 531 QNAAMEFSMETLQPTFRVLWGSTGLSNALRVAKSIGFNKRILENAHKWTEKLNPE----- 585
Query: 615 ADMEKFKQEYQELLAEGRHYLMHSRE---LHNSLLNTRRKIAEHST--------KLRFKK 663
D+E+ +Q L+ E + + + H L+N ++ EH + L K+
Sbjct: 586 QDVERKGSLFQSLMEERNKLKLQATKTAAFHRDLMNLYHEL-EHESHDLDKRERALLKKE 644
Query: 664 MREVSEAAATARSDIHKKVREMDALAK--QASQHKKSIKSSPSSATNSLHTAADNKKPTI 721
++V E +A+S + + V E ++ + QA Q+ I + + + P
Sbjct: 645 TQKVQEDLNSAKSKMERLVAEFESQLEITQADQYNSLILKTEEAVAEIIEACC----PMD 700
Query: 722 ADRSASAIKKLNQSSSDRFELPKVGDMVHVASLGKKV-TVLKVDSSKGD-IVVQAGNMKL 779
D L + SD P+ G+ V V LG K+ TV++ D ++VQ G +++
Sbjct: 701 PD-------SLEEEYSDYS--PQAGEKVLVTGLGDKLGTVVEEPGDDDDTVLVQHGKIRV 751
Query: 780 KLKVTDIQ 787
++K DI+
Sbjct: 752 RIKKKDIK 759
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 10/204 (4%)
Query: 420 VIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSLSQSL 479
+ ++TGPN GGK+ L+++ AA++ SGL V A ES IP FDSI + S
Sbjct: 763 LFLLTGPNGGGKSSLLRSICAAALLGISGLMVPA-ESACIPHFDSIMLHMKSYDSPVDGK 821
Query: 480 STFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLTIATT 539
S+F + +I +I +TS+SLVL+DE+ GT GCL ++T
Sbjct: 822 SSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLGIVSTH 881
Query: 540 HHGELK-TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVVDT 598
HG L N ++ E E KPT+K+ G+ S A A+R G+P V+
Sbjct: 882 LHGIFSLPLTAKNITYKAMGAENVEGQTKPTWKLTDGVCRESLAFETAKREGVPESVIQR 941
Query: 599 ARKLYGS-----ASAEI---DEVI 614
A LY S ASAE+ D++I
Sbjct: 942 AEALYLSVYAKDASAEVVKPDQII 965
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Query: 422 VITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSLSQSLST 481
+ITGPN GGK+ ++ V L ++MA+ G +V AS + ++ D +F +G S+ ST
Sbjct: 814 IITGPNMGGKSCYIRQVALISIMAQVGSFVPASFA-KLHVLDGVFTRMGASDSIQHGRST 872
Query: 482 FSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLTIATTHH 541
F L + S+I +S+SLV+LDE+G GT+ + L + TH+
Sbjct: 873 FLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHY 932
Query: 542 -----------GELKTLKYSNEAFENACMEFDEVNLKPTYKVLWGIPGRSNAINIAERLG 590
G + T S + +D ++ YK++ G+ RS +A+
Sbjct: 933 PEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQ 992
Query: 591 LPSVVVDTARKLYGSASAEI 610
+P + A + AE+
Sbjct: 993 IPPSCIRRAISMAAKLEAEV 1012
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 407 PVPVDFLVPQK--------TRVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQ 458
PVP D L+ + R +++TGPN GGK+ L+ LA + A+ G YV ES +
Sbjct: 827 PVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYV-PCESCE 885
Query: 459 IPWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXX 518
I D+IF +G + STF + +++ ++T SLV+LDE+G GT+
Sbjct: 886 ISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYA 945
Query: 519 XXXXXXXXFAQD-GCLLTIATTHHGELK--------TLKYSNEAFEN-------ACMEFD 562
+ C + AT +H K T K+ AF++ C
Sbjct: 946 IAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRGC---- 1001
Query: 563 EVNLKPTYKVLWGIPGRSNAINIAERLGLPSVVVDTA 599
+ +L Y++ G S + +A G+P+ VV+TA
Sbjct: 1002 DQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETA 1038
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 413 LVPQKTRVI-------VITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQIPWFDSI 465
+P R++ ++TGPN GGK+ ++ VG+ +MA+ G +V ++ I D I
Sbjct: 647 FIPNDCRLMRGKSWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKA-SISIRDCI 705
Query: 466 FADIGDEQSLSQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXXXXXXXX 525
FA +G + +STF + + ++I ++ +SL+++DE+G GT+
Sbjct: 706 FARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICE 765
Query: 526 XFAQDGCLLTIATTHHGELKTLKYSNEAFE-----------NACMEFDEVNLKPTYKVLW 574
Q T+ TH EL L +N +A ++ + L YKV
Sbjct: 766 HLVQVKRAPTLFATHFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEP 825
Query: 575 GIPGRSNAINIAERLGLPSVVVDTARK 601
G +S I++AE P VV AR+
Sbjct: 826 GACDQSFGIHVAEFANFPESVVALARE 852
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 416 QKTRVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSL 475
+K I++TGPN GGK+ L+ V LA ++A+ G V A E+ ++ D I +G + +
Sbjct: 1071 EKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPA-ETFEVSPVDKICVRMGAKDHI 1129
Query: 476 SQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLT 535
STF L + + + +T SLV+LDE+G GT F +
Sbjct: 1130 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1189
Query: 536 IATTHHGELKTLKYSNEAF---ENACM------EFDEVNLKPTYKVLWGIPGRSNAINIA 586
+TH+ L +N AC +EV Y++ G +S +N+A
Sbjct: 1190 FFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTF--LYRLTPGACPKSYGVNVA 1247
Query: 587 ERLGLPSVVVDTA-------RKLYGSASAEIDEVIADMEK 619
GLP V+ A LYG + D +A M K
Sbjct: 1248 RLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKLAAMIK 1287
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 19/220 (8%)
Query: 416 QKTRVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQIPWFDSIFADIGDEQSL 475
+K I++TGPN GGK+ L+ V LA ++A+ G V A E+ ++ D I +G + +
Sbjct: 1074 EKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPA-ETFEVSPVDKICVRMGAKDHI 1132
Query: 476 SQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXXXXXXXXXFAQDGCLLT 535
STF L + + + +T SLV+LDE+G GT F +
Sbjct: 1133 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1192
Query: 536 IATTHHGELKTLKYSNEAF---ENACM------EFDEVNLKPTYKVLWGIPGRSNAINIA 586
+TH+ L +N AC +EV Y++ G +S +N+A
Sbjct: 1193 FFSTHYHRLSVDYQTNPKVSLCHMACQIGEGIGGVEEVTF--LYRLTPGACPKSYGVNVA 1250
Query: 587 ERLGLPSVVVDTA-------RKLYGSASAEIDEVIADMEK 619
GLP V+ A LYG + D +A M K
Sbjct: 1251 RLAGLPDYVLQRAVIKSQEFEALYGKNHRKTDHKLAAMIK 1290
>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
chr4:9708742-9714068 FORWARD LENGTH=792
Length = 792
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 400 MEKTQPEPVPVDFLVPQKTRVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQI 459
+E + V + + T ++V+ GPN GK+ L+ V L ++A+ G YV A + I
Sbjct: 528 LESIHNDFVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFA-TI 586
Query: 460 PWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGTNPXXXXXX 519
D IF +G +L + STF +R+ + I + T++SL+++DE+G T+
Sbjct: 587 RVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATS------- 639
Query: 520 XXXXXXXFAQDGC--LL-----TIATTHHGELKTLK--YSNEAFENACMEFDEVNLKPTY 570
A C LL T+ TH L L Y N + ++ + L +
Sbjct: 640 -SSDGLAMAWSCCEYLLSLKAYTVFATHMDSLAELATIYPNVKVLHFYVDIRDNRLDFKF 698
Query: 571 KVLWG---IPGRSNAINIAERLGLPSVVVDTARKLYGSASAEIDEVIADMEKFKQEYQEL 627
++ G +P + +AE GLPS V+DTAR I + I D E + E
Sbjct: 699 QLRDGTLHVP--HYGLLLAEVAGLPSTVIDTARI--------ITKRITDKENKRIE---- 744
Query: 628 LAEGRHYLMH 637
L G+H+ +H
Sbjct: 745 LNCGKHHEIH 754
>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
chr3:7143546-7150811 FORWARD LENGTH=807
Length = 807
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 406 EPVPVDFLVPQKT------RVIVITGPNTGGKTICLKTVGLAAMMAKSGLYVLASESLQI 459
+ + VD +P T R+ +ITGPN GK+I +K V L ++ G +V A ++ +
Sbjct: 544 QEMAVDTFIPNDTEINDNGRIHIITGPNYSGKSIYVKQVALIVFLSHIGSFVPA-DAATV 602
Query: 460 PWFDSIFADIGDEQSLSQSLSTFSGHLRQISNIKLHSTSQSLVLLDEVGAGT 511
D IF +G + ++ STF L Q+ + +TS+SL LLDE G GT
Sbjct: 603 GLTDRIFCAMGS-KFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGT 653