Miyakogusa Predicted Gene

Lj2g3v2184490.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2184490.2 Non Chatacterized Hit- tr|E1Z7D2|E1Z7D2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,37.25,0.0000000004, ,CUFF.38740.2
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   215   1e-56
AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   210   2e-55

>AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to
           55 proteins in 14 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18368201-18368644 FORWARD LENGTH=147
          Length = 147

 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 126/149 (84%), Gaps = 6/149 (4%)

Query: 1   MEVYGKS-VVEAPSNVIYLSSILGQDGPIPVHKCNWKCENERVCGNMFRCKITGLTHICD 59
           MEV+GKS VV   +NVIYLS+ILG +GP   HKC+WKCENE VCGNM+RCK+TGLTH+CD
Sbjct: 1   MEVFGKSHVVVGSANVIYLSAILGHEGP--NHKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCNQRIVYDNHSSLCLASGQMFPLTLVEEQAVRGVRRKLDAENSPVDNGGC--KRRRDA 117
           KNCNQRI+YDNH+SLC ASG++FPL+LVEEQAV+GVRRKLD E+    +  C  +RRRDA
Sbjct: 59  KNCNQRILYDNHNSLCRASGRIFPLSLVEEQAVKGVRRKLDDESQQQPSESCVKRRRRDA 118

Query: 118 QFHPSPFERSFSAVSPICSQV-GDGMDLN 145
           QFH SPFERSF+AVSP CSQ  GDGM++N
Sbjct: 119 QFHSSPFERSFAAVSPFCSQAGGDGMEIN 147


>AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:8428577-8429017
           FORWARD LENGTH=146
          Length = 146

 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/147 (72%), Positives = 125/147 (85%), Gaps = 5/147 (3%)

Query: 1   MEVYGKS-VVEAPSNVIYLSSILGQDGPIPVHKCNWKCENERVCGNMFRCKITGLTHICD 59
           MEV+GKS +V   +NVIYLS+ILG+D     HKC+WKCENE VCGNM+RCK+TGLTH+CD
Sbjct: 1   MEVFGKSPMVVTSANVIYLSAILGRD--CDGHKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCNQRIVYDNHSSLCLASGQMFPLTLVEEQAVRGVRRKLD-AENSPVDNGGCK-RRRDA 117
           KNCNQRI+YDNHSSLC ASG++FPL+ VEEQAV+GVRRKLD AE+ P ++   K RRRDA
Sbjct: 59  KNCNQRILYDNHSSLCRASGRIFPLSSVEEQAVKGVRRKLDAAESHPSESCSFKRRRRDA 118

Query: 118 QFHPSPFERSFSAVSPICSQVGDGMDL 144
           QFH SPFERSF+AVSPICS  GDGM+L
Sbjct: 119 QFHASPFERSFTAVSPICSPAGDGMEL 145