Miyakogusa Predicted Gene

Lj2g3v2183310.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2183310.3 tr|B9I2B5|B9I2B5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_661646
PE=4,65.89,3e-19,seg,NULL,CUFF.38710.3
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49590.1 | Symbols:  | Autophagy-related protein 13 | chr3:18...    63   7e-11
AT3G49590.2 | Symbols:  | Autophagy-related protein 13 | chr3:18...    63   7e-11
AT3G49590.3 | Symbols:  | Autophagy-related protein 13 | chr3:18...    50   5e-07

>AT3G49590.1 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=603
          Length = 603

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 60/124 (48%), Gaps = 12/124 (9%)

Query: 5   IRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTS-SSQESPSGVRSFRK 63
           +RP TAPVTIP       +R +S NFS+                S SSQ+S  G+  +R 
Sbjct: 362 VRPGTAPVTIPS--SATLNRYVSSNFSEPGRNPLPPFSPKSTRRSPSSQDSLPGIALYRS 419

Query: 64  ---------IETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRTSSKLSFQDDLDDG 114
                    +      QK+ +DSK DSGRF         PR  FSR+ S+LS QDDLDD 
Sbjct: 420 SRSGESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQDDLDDP 479

Query: 115 DFSC 118
           D SC
Sbjct: 480 DCSC 483


>AT3G49590.2 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=603
          Length = 603

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 60/124 (48%), Gaps = 12/124 (9%)

Query: 5   IRPETAPVTIPHPMMGKGSRNLSPNFSDXXXXXXXXXXXXXXDTS-SSQESPSGVRSFRK 63
           +RP TAPVTIP       +R +S NFS+                S SSQ+S  G+  +R 
Sbjct: 362 VRPGTAPVTIPS--SATLNRYVSSNFSEPGRNPLPPFSPKSTRRSPSSQDSLPGIALYRS 419

Query: 64  ---------IETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFSRTSSKLSFQDDLDDG 114
                    +      QK+ +DSK DSGRF         PR  FSR+ S+LS QDDLDD 
Sbjct: 420 SRSGESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQDDLDDP 479

Query: 115 DFSC 118
           D SC
Sbjct: 480 DCSC 483


>AT3G49590.3 | Symbols:  | Autophagy-related protein 13 |
           chr3:18377892-18380104 FORWARD LENGTH=618
          Length = 618

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 56/139 (40%), Gaps = 27/139 (19%)

Query: 5   IRPETAPVTIPHPMMGKGSRNLSPNFSD----------------XXXXXXXXXXXXXXDT 48
           +RP TAPVTIP       +R +S NFS+                               +
Sbjct: 362 VRPGTAPVTIPS--SATLNRYVSSNFSEPGRNPLPPFSPKSTRRSPSSQDSLPGIALYRS 419

Query: 49  SSSQESPSG---------VRSFRKIETSKIGQKIVRDSKDDSGRFXXXXXXXXXPRIGFS 99
           S S ESPSG         V       +  + +K     K DSGRF         PR  FS
Sbjct: 420 SRSGESPSGLMNQYPTQKVMLLTSYVSCSMQEKYHYIFKYDSGRFSGVLSSSDSPRFAFS 479

Query: 100 RTSSKLSFQDDLDDGDFSC 118
           R+ S+LS QDDLDD D SC
Sbjct: 480 RSPSRLSSQDDLDDPDCSC 498