Miyakogusa Predicted Gene

Lj2g3v2183230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2183230.1 Non Chatacterized Hit- tr|F2TYR0|F2TYR0_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,41.46,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Peptidase_C78,Peptidase C78, ubiquitin fold modifie,CUFF.38695.1
         (432 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24680.1 | Symbols:  | Peptidase C78, ubiquitin fold modifier...   359   2e-99

>AT5G24680.1 | Symbols:  | Peptidase C78, ubiquitin fold
           modifier-specific peptidase 1/ 2 | chr5:8453666-8455358
           FORWARD LENGTH=399
          Length = 399

 Score =  359 bits (921), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/441 (46%), Positives = 268/441 (60%), Gaps = 54/441 (12%)

Query: 3   SSTCPICNISLPSSQLQWHANTHFDDDDNHAPPVEQAINGFHFDTISGDHDSWFGGTGRG 62
           S+ CP+CN++LP S +Q H N+HF+DD+     +   I   H   +    D         
Sbjct: 2   SALCPVCNLTLPLSLIQSHVNSHFEDDE-----INPQIETDHHLALQLASDDHSSDDPSS 56

Query: 63  KGVWEMNEKISCLVGLQRWGDFYKVG-AGLMVLLRNCLESEAD--------SRSILSGYV 113
                 +  ++ LV LQ    FY VG  GL+ LLRNCLESE          S S+LSG+V
Sbjct: 57  SSSASSSNNVASLVQLQTKSQFYSVGHGGLICLLRNCLESELKLKSKPLECSTSLLSGFV 116

Query: 114 DHFQSNLSEDVGWGCGWRNIQMLSSHLLAQRPGAREAMFGGSGFVPDIPFLQRWLEIAWE 173
           DHFQS+  ED GWGCGW+NIQM  SHLL+ R  A+  +FGGS FVPDIP LQRWLE+AW 
Sbjct: 117 DHFQSS-KEDKGWGCGWKNIQMQCSHLLSHREEAKRVLFGGSNFVPDIPSLQRWLELAWN 175

Query: 174 RGFDETGSHQFNHAVYGSRKWIGATECAALLRSFGLRAKIVDFAPKESESLFLSVPGSSV 233
           +GFD +G+  F++ + GS++WIG TECAALLRSFGL+A+IVDFAP++S+S++LSVPGS++
Sbjct: 176 KGFDVSGALHFDNRICGSKRWIGTTECAALLRSFGLKARIVDFAPEKSKSMYLSVPGSAI 235

Query: 234 GAQELVTINGGRKRKISNVYGPMDRYLYRDVXXXXXXXXXXXXXXLMRLHDAVDNKSDGD 293
             +                YGPMDRY                    M            D
Sbjct: 236 APK-------------VKSYGPMDRY--------------------MVKKGGSGKGKAVD 262

Query: 294 GAVKSTAKQSKGHQVLMDFVWNYFSSND-SIQFGHQRVAISQKTPLYFQHDGHSRTIVGI 352
               ++++ SKG  VLM++VWNYFS N  S+  G   V I+ K PLYFQH+GHSRTIVG+
Sbjct: 263 SHSSNSSRISKG-AVLMEWVWNYFSDNRLSVSSG---VHITNKGPLYFQHEGHSRTIVGV 318

Query: 353 QVKHQ-RNGAMQYNLLILDPGHRTAALERTLKEKVGWQRYVKRGVHTLRRKQYQLCYVDP 411
           Q + Q      QYNLLILDP   T A+E  L EK GW+ Y+KRG HTL+  +YQ+ YVD 
Sbjct: 319 QRRLQGTTFTPQYNLLILDPADFTRAIEIALIEKRGWEGYLKRGAHTLKCPEYQMLYVDN 378

Query: 412 GIANEKEMEQLKTMDSVFLEL 432
           GIA+ +E+E+LKT+DS F+E 
Sbjct: 379 GIADGEELEKLKTIDSHFVEF 399