Miyakogusa Predicted Gene
- Lj2g3v2171850.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2171850.2 Non Chatacterized Hit- tr|I1JH54|I1JH54_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18679
PE,82.82,0,DEAD-like helicases superfamily,Helicase, superfamily 1/2,
ATP-binding domain; PHD zinc finger,Zinc ,CUFF.38803.2
(1307 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 1547 0.0
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 150 5e-36
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 146 1e-34
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 124 4e-28
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 124 6e-28
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 124 6e-28
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 124 6e-28
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 119 2e-26
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 118 3e-26
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 112 3e-24
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 108 3e-23
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 103 7e-22
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 95 3e-19
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 84 8e-16
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 81 6e-15
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 80 7e-15
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 80 1e-14
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 77 1e-13
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 76 1e-13
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 76 1e-13
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 76 1e-13
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 76 2e-13
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 75 2e-13
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 75 3e-13
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 70 8e-12
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 69 2e-11
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 69 2e-11
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 69 3e-11
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 68 4e-11
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 68 4e-11
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 65 3e-10
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 64 6e-10
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 64 6e-10
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 64 6e-10
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 64 7e-10
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 63 1e-09
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 62 2e-09
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 61 5e-09
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 61 5e-09
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 61 5e-09
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 61 5e-09
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 61 6e-09
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 61 7e-09
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 60 7e-09
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 59 2e-08
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 59 2e-08
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 59 3e-08
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 59 3e-08
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 59 3e-08
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 59 3e-08
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 57 7e-08
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 57 1e-07
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 57 1e-07
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 50 9e-06
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 1547 bits (4006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1318 (60%), Positives = 973/1318 (73%), Gaps = 42/1318 (3%)
Query: 1 MGLGKTVELLACIYAHRRSASGSDTLIESVPQVNGDQNITLKRLKRERVECICGAVNESI 60
MGLGKTVELLACI++HR+ A + + + V N L+RLKRERVECICGAV+ES
Sbjct: 364 MGLGKTVELLACIFSHRKPAE-DEISVSNGSSVTDVLNAGLRRLKRERVECICGAVSESH 422
Query: 61 KYQGLWVQCDICDAWQHADCVRYSPKGKSLKSKQ-----GSESKTYK--TTIAVRDGEYV 113
KY+G+WVQCD+CDAWQHADCV YSPKGK K Q S+ K+ K T I VR+GEY+
Sbjct: 423 KYKGVWVQCDLCDAWQHADCVGYSPKGKGKKDSQHIDEKASQKKSKKDATEIIVREGEYI 482
Query: 114 CQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSN 173
CQMCSEL+Q T SPI++GATLIVCPAPILPQWH EI RHTR GSL TCIYEGVR+ S S
Sbjct: 483 CQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSE 542
Query: 174 TSLMDISDLASADIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWR 233
++DI++L +ADIV+TTYDVLKEDL+HD DRH+GDRH LRFQKRYPVIPT LTRI+WWR
Sbjct: 543 EPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWR 602
Query: 234 VCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRW 293
+CLDEAQMVESNA AATEMALRL++KH WCITGTPIQRKLDDL+GLL+FLK +PF+ RW
Sbjct: 603 ICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRW 662
Query: 294 WAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEH 353
W EV+RDPYE+ D AMEFTH FKQ+MWRSSK HVADEL LP QEEC+SWL S +EEH
Sbjct: 663 WIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIEEH 722
Query: 354 FYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQ 413
FY RQH+TCV A EVIE+L+ DIL R G S S +PL+TH EA KLLN+LLKLRQ
Sbjct: 723 FYSRQHDTCVSYAREVIETLKRDILKR---GHTS---SDNPLVTHAEAAKLLNSLLKLRQ 776
Query: 414 ACCHPQVGSSGLRSLQQSPMTMEEILMVLINKTKIEGEEALRRLVVSLNGLAAIATIQQD 473
ACCHPQVGSSGLRSLQQSPMTMEEILMVL+ KT+ EGEEALR L+V+LNG+AAIA ++Q+
Sbjct: 777 ACCHPQVGSSGLRSLQQSPMTMEEILMVLVKKTQSEGEEALRVLIVALNGIAAIAMLKQE 836
Query: 474 FSQAALLYNEALTLTEEHSEDFRLDPLLNIHIHHNLAETLPLAENVALILPSKGKQFSGT 533
FS+A LY EAL++TEEH+EDFRLDPLLNIHI HNLAE LP+A++ L + G+ +
Sbjct: 837 FSEAVSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGGKLSASGRPETKI 896
Query: 534 SAVKSTRKHFIAKVDRCLVKRQKISGCDDKNLEVASAEPSHIASSLSENDLNEDLKFDDL 593
VK H + KRQ+I+ + +L S+E H +++ ++ LK D
Sbjct: 897 D-VKDDDHHRAS-------KRQRINELE--SLTHDSSETVHQREAIAPDN---GLKKDGE 943
Query: 594 SASPVKSLIAECEDSKKKYLSVFNSKLSAAQQEFQNSSTQVRNAYRESRTDQNTCWWLEA 653
K+L C+ K KYLS FNSKLSAAQ EF+ S QV + + Q + WWL+A
Sbjct: 944 CHEECKTLDIVCDTLKVKYLSAFNSKLSAAQHEFKKSYNQVSESL-SNMGKQRSVWWLDA 1002
Query: 654 LHHAEQNKDFSTELIRKIEEAISGNSNNSKSSRIAARFRGISSLKYQIQTGLDQLEASRK 713
L EQNKDFS+EL RKIEEA+ GN NNS SSR ++RFR I +K +QT +D LE SRK
Sbjct: 1003 LQLTEQNKDFSSELTRKIEEALHGNLNNSSSSRESSRFRTIHGMKLHLQTCMDMLERSRK 1062
Query: 714 VLLERLLEIDHTMENPKGEDIERVGKCRNCQPNCDGPPCVLCELDELFQGYEARLFVLKN 773
+++R+LEID TME PK EDIER+ C+ C N DGPPC+ CELDELFQ YEARLF L
Sbjct: 1063 KVIDRILEIDQTMEKPKLEDIERISNCKYCNKNSDGPPCIHCELDELFQEYEARLFRLNK 1122
Query: 774 ERGGI--ISSAEEAVDLQKKKFALNHFLSKLSQSNHSSTVSDIDNEESKKRNVGQRVVVS 831
R G+ I++AEE V LQKK+ A N FL LS + S D+EE KRN G VV+S
Sbjct: 1123 SRRGVMEIAAAEETVHLQKKRDARNLFLFGLSSRSKDLNASRGDDEEPTKRNAGDIVVLS 1182
Query: 832 RSASELELILGAMKNYCKARLGRGSVSAATRHLHMLEGMRKEFAHARSLALAQAQYLRAH 891
+S SE E++LG ++N+CK L R S AAT+HLH LE MRKE+ HAR LA QAQ LRA+
Sbjct: 1183 KSPSETEIVLGVIRNHCKTHLDRESKLAATKHLHTLEVMRKEYVHARVLARDQAQLLRAY 1242
Query: 892 DEIKMAVSRLHLRANEDDKSLDALGENELVAASSDFSHEKYMSLALLSQIKGKLRYLQGL 951
DEI M+ RL LR +EDD S+ ALG +EL AS +++K+M+ + L IKGKLRYL+GL
Sbjct: 1243 DEINMSTMRLQLRESEDDTSIYALGRDELDVASVLNTNDKFMAQSSLLSIKGKLRYLKGL 1302
Query: 952 VQSKQKLSLESPDSSSFIQETTKISNTKEEKGALISKTDEETCPVCQEKLGNQRMVFQCG 1011
++SKQK ESPD SS I ET S+ E++ + K D E CP+C E L NQ+MVFQCG
Sbjct: 1303 MKSKQKQESESPDLSSPIHETVDASDPAEQESENLLKRD-EACPICHEILRNQKMVFQCG 1361
Query: 1012 HFTCCKCLFAMTEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQNESSNSSMQHTVDS 1071
H TCC C FAMTE++ WVMCP CRQHTD NIAYA D +N S+SS Q DS
Sbjct: 1362 HSTCCNCFFAMTERKSVQETLQKWVMCPICRQHTDVRNIAYADDRRN--SSSSDQDHKDS 1419
Query: 1072 CEKCETSISVKGSYGTKIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNIT 1131
E S+ V+GSYGTKIEAVTRRIL IK++D + KVLVFSSWNDVLDVLEHAFAAN+IT
Sbjct: 1420 ----EASLVVQGSYGTKIEAVTRRILWIKSSDPQTKVLVFSSWNDVLDVLEHAFAANSIT 1475
Query: 1132 FVRMKGGRKAQVAINQFRGKQNGTK--GCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVV 1189
+RMKGGRK+Q AI++F+G + T+ + KSIQVLLLL+QHGANGLNLLEAQHV+
Sbjct: 1476 CIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVI 1535
Query: 1190 LVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSRSNH--SFISGN 1247
LVEPLLNPAAEAQA+ RVHRIGQ+ TL+HRF+V TVE+SIYKLNR+++ + SF S N
Sbjct: 1536 LVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVSGTVEESIYKLNRNKNTNLSSFSSRN 1595
Query: 1248 TKNQDQPVLTLKDVESLLSRTPVTMPESDENPIA-NADLRNFPPSMAAAIAAERRLND 1304
TKNQDQ LTLKD+ESL + E ++NP +LR+ PPS+AAA+AAERR+ +
Sbjct: 1596 TKNQDQQFLTLKDLESLFASPTAETAEMEQNPGERQENLRDLPPSVAAALAAERRMKE 1653
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 143/299 (47%), Gaps = 51/299 (17%)
Query: 125 ESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLAS 184
+S + +G LIVCP +L QW EI H +PGSL ++ G + D L+
Sbjct: 484 KSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYG-------QSRPKDAKLLSQ 536
Query: 185 ADIVITTYDVLKEDLSHD-SDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVE 243
+D+VITTY VL + S + S HEG + + W+R+ LDEA ++
Sbjct: 537 SDVVITTYGVLTSEFSQENSADHEG-----------------IYAVRWFRIVLDEAHTIK 579
Query: 244 SNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYE 303
++ + + A L + WC+TGTPIQ L+DLY LLRFL++ P+ T+ WW ++++ P+E
Sbjct: 580 NSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFE 639
Query: 304 KGDIGAMEFTHTIFKQIMWRSSKKHVADE----LDLPSQEECLSWLTLSPVEEHFYQRQH 359
+GD ++ +I K IM R +K E L LP + + + LS E FY
Sbjct: 640 EGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALF 699
Query: 360 ETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
+ + +E + + H A +L LL+LRQ C HP
Sbjct: 700 KRSKVKFDQFVEQGK---------------------VLHNYA-SILELLLRLRQCCDHP 736
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 52/309 (16%)
Query: 946 RYLQGLVQSKQKLSLESPDSSSFIQETTKISNTKEEKGALISKTDEETCPVCQEKLGNQR 1005
R+L G ++ + P S +F+QE EE + K ++ CP+C E L +
Sbjct: 757 RFLSGKSSGLEREGKDVP-SEAFVQEVV------EE----LRKGEQGECPICLEALEDA- 804
Query: 1006 MVFQCGHFTCCKCLFAMTEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQNESSNSSM 1065
++ C H C +CL A ++S + +CP CR S
Sbjct: 805 VLTPCAHRLCRECLLA----SWRNSTSG---LCPVCRNTV------------------SK 839
Query: 1066 QHTVDSCEKCETSISVKGSY--GTKIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEH 1123
Q + + + + V+ ++ +KI A+ + ++++ K ++FS W LD+L+
Sbjct: 840 QELITAPTESRFQVDVEKNWVESSKITALLEELEGLRSSGSKS--ILFSQWTAFLDLLQI 897
Query: 1124 AFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLL 1183
+ NN +FVR+ G Q + E S SI VLL+ ++ G G+NL
Sbjct: 898 PLSRNNFSFVRLDGTLSQQQREKVLK---------EFSEDGSILVLLMSLKAGGVGINLT 948
Query: 1184 EAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSRSNHSF 1243
A + +++P NPA E QA+ R+HRIGQ + I RFIVK TVE+ + + +
Sbjct: 949 AASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARK--QRM 1006
Query: 1244 ISGNTKNQD 1252
ISG +Q+
Sbjct: 1007 ISGALTDQE 1015
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 137/290 (47%), Gaps = 43/290 (14%)
Query: 129 ASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
A G TLI+CP +L QW DE+ H++P ++ +Y G T D +AS D+V
Sbjct: 739 AKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTH-------DAKAIASHDVV 791
Query: 189 ITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATA 248
+TTY VL D + ++ RI W+R+ LDEA ++S T
Sbjct: 792 LTTYGVLTSAYKQD------------------MANSIFHRIDWYRIVLDEAHTIKSWKTQ 833
Query: 249 ATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIG 308
A + L S WC+TGTP+Q KL+DLY LL FL V P+ + WW+++++ PYE GD
Sbjct: 834 AAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPR 893
Query: 309 AMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHE 368
++ I + +M R +K+ E L L L P + + + RD +
Sbjct: 894 GLKLIKAILRPLMLRRTKETRDKEGSL--------ILELPPTDVQVIECEQSEAERDFYT 945
Query: 369 VIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
+ ++ V + L++ ++ +L LL+LRQ C HP
Sbjct: 946 ALFKRSKVQFDQFVAQGKVLHNYAN----------ILELLLRLRQCCNHP 985
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 33/241 (13%)
Query: 994 CPVCQEKLGNQRMVFQCGHFTCCKCLFAMTEQRLQHSKTHNWVMCPTCRQHTDFGNIAYA 1053
CP+C E + ++ C H C +CL L ++ + +CP CR +
Sbjct: 1040 CPICLES-ADDPVLTPCAHRMCRECL-------LTSWRSPSCGLCPICRTILKRTEL--- 1088
Query: 1054 VDAQNESSNSSMQHTVDSCEKCETSISVKGSYGTKIEAVTRRILSIKATDHKEKVLVFSS 1113
+ DS + + + K S +K+ + + + IK + EK +VFS
Sbjct: 1089 -----------ISCPTDSIFRVDVVKNWKES--SKVSELLKCLEKIKKSGSGEKSIVFSQ 1135
Query: 1114 WNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEKSTPKSIQVLLLLI 1173
W LD+LE F+R G+ AQ +G++ K ++ K+I LL+ +
Sbjct: 1136 WTSFLDLLEIPLRRRGFEFLRF-DGKLAQ------KGREKVLKEFNETKQKTI--LLMSL 1186
Query: 1174 QHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYK 1233
+ G GLNL A V L++P NPA E QAI R+HRIGQK + RFIVKDTVE+ + +
Sbjct: 1187 KAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQ 1246
Query: 1234 L 1234
+
Sbjct: 1247 V 1247
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 133/300 (44%), Gaps = 60/300 (20%)
Query: 130 SGATLIVCPAPILPQWHDEIIRH-TRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TLIVCP ++ QW DE+ + T L +Y G T D +LA D+V
Sbjct: 632 AAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTK-------DPHELAKYDVV 684
Query: 189 ITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATA 248
ITTY ++ S R D + F + L ++ W+RV LDEAQ +++ T
Sbjct: 685 ITTYSLV-------SKRKHMDCEPVEF------LSGPLAQVSWFRVVLDEAQSIKNYKTQ 731
Query: 249 ATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIG 308
A+ LH+K WC++GTPIQ + DLY RFLK P+++Y+ + E +++P
Sbjct: 732 ASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGE 791
Query: 309 AMEFTHTIFKQIMWRSSKKHVADE---LDLPSQEECLSWLTLSPVEEHFYQRQHETCVRD 365
+ I K++M R +K + D + LP + L + + E FY + C
Sbjct: 792 GYKTLQAILKKVMLRRTKDTLLDGKPVISLPPKSIELRRVDFTKEERDFYSKLE--C--- 846
Query: 366 AHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAG-------KLLNALLKLRQACCHP 418
DS D + EAG +L LL+LRQAC HP
Sbjct: 847 ------------------------DSRDQFKEYAEAGTVKQNYVNILLMLLRLRQACGHP 882
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNGTKGCEKST 1162
EK +VF+ W +LD+LE ++ I + R G A+ F +T
Sbjct: 1072 EKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDF------------NT 1119
Query: 1163 PKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
+ V+++ ++ + GLN++ A HV++++ NP E QAI R HRIGQ + RF
Sbjct: 1120 LPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFT 1179
Query: 1223 VKDTVEDSIYKLNRSR 1238
VKDTVED I L + +
Sbjct: 1180 VKDTVEDRILALQQKK 1195
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 130 SGATLIVCPAPILPQWHDEIIRH-TRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TL+VCP ++ QW DE+ + T +L +Y G T D +LA D+V
Sbjct: 671 AAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTK-------DPHELAKYDVV 723
Query: 189 ITTYDVL-----KEDLSHDSDR-----HEGDRHLLRF----QKRYP-------------- 220
+TT+ ++ K+ L D D H+G F +++YP
Sbjct: 724 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVE 783
Query: 221 VIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLL 280
+ L ++ W+RV LDEAQ +++ T L +K WC++GTPIQ +DDLY
Sbjct: 784 FLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYF 843
Query: 281 RFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE---LDLPS 337
RFLK P+++Y + +++P + + + I K +M R +K + D + LP
Sbjct: 844 RFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPP 903
Query: 338 QEECLSWLTLSPVEEHFYQR---QHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDP 394
+ L + + E FY + + T R+ E +++ + +N
Sbjct: 904 KSIELRKVDFTVEERDFYSKLEAESRTQFREYAEA-GTVKQNYVN--------------- 947
Query: 395 LITHTEAGKLLNALLKLRQACCHP 418
+L LL+LRQAC HP
Sbjct: 948 ---------ILLMLLRLRQACDHP 962
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 130 SGATLIVCPAPILPQWHDEIIRH-TRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TL+VCP ++ QW DE+ + T +L +Y G T D +LA D+V
Sbjct: 506 AAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTK-------DPHELAKYDVV 558
Query: 189 ITTYDVL-----KEDLSHDSDR-----HEGDRHLLRF----QKRYP-------------- 220
+TT+ ++ K+ L D D H+G F +++YP
Sbjct: 559 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVE 618
Query: 221 VIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLL 280
+ L ++ W+RV LDEAQ +++ T L +K WC++GTPIQ +DDLY
Sbjct: 619 FLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYF 678
Query: 281 RFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE---LDLPS 337
RFLK P+++Y + +++P + + + I K +M R +K + D + LP
Sbjct: 679 RFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPP 738
Query: 338 QEECLSWLTLSPVEEHFYQR---QHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDP 394
+ L + + E FY + + T R+ E +++ + +N
Sbjct: 739 KSIELRKVDFTVEERDFYSKLEAESRTQFREYAEA-GTVKQNYVN--------------- 782
Query: 395 LITHTEAGKLLNALLKLRQACCHP 418
+L LL+LRQAC HP
Sbjct: 783 ---------ILLMLLRLRQACDHP 797
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 17/165 (10%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQV---AINQFRGKQNGTKGCEKST 1162
EK +VFS W +L++LE + +++I + R+ G A+ F +T
Sbjct: 966 EKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDF------------NT 1013
Query: 1163 PKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
+ V+++ ++ + GLN++ A HV++++ NP E QAI R HRIGQ + RF
Sbjct: 1014 LPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFT 1073
Query: 1223 VKDTVEDSIYKLNRSRSNH--SFISGNTKNQDQPVLTLKDVESLL 1265
VKDTVED I L + + S + K Q LT++D+ L
Sbjct: 1074 VKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1118
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 67/324 (20%)
Query: 130 SGATLIVCPAPILPQWHDEIIRH-TRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TL+VCP ++ QW DE+ + T +L +Y G T D +LA D+V
Sbjct: 664 AAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTK-------DPHELAKYDVV 716
Query: 189 ITTYDVL-----KEDLSHDSDR-----HEGDRHLLRF----QKRYP-------------- 220
+TT+ ++ K+ L D D H+G F +++YP
Sbjct: 717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKKGSKKKKVE 776
Query: 221 VIPTLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLL 280
+ L ++ W+RV LDEAQ +++ T L +K WC++GTPIQ +DDLY
Sbjct: 777 FLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYF 836
Query: 281 RFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE---LDLPS 337
RFLK P+++Y + +++P + + + I K +M R +K + D + LP
Sbjct: 837 RFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGKPIISLPP 896
Query: 338 QEECLSWLTLSPVEEHFYQR---QHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDP 394
+ L + + E FY + + T R+ E +++ + +N
Sbjct: 897 KSIELRKVDFTVEERDFYSKLEAESRTQFREYAEA-GTVKQNYVN--------------- 940
Query: 395 LITHTEAGKLLNALLKLRQACCHP 418
+L LL+LRQAC HP
Sbjct: 941 ---------ILLMLLRLRQACDHP 955
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 17/165 (10%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQV---AINQFRGKQNGTKGCEKST 1162
EK +VFS W +L++LE + +++I + R+ G A+ F +T
Sbjct: 1124 EKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDF------------NT 1171
Query: 1163 PKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
+ V+++ ++ + GLN++ A HV++++ NP E QAI R HRIGQ + RF
Sbjct: 1172 LPEVTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFT 1231
Query: 1223 VKDTVEDSIYKLNRSRSNH--SFISGNTKNQDQPVLTLKDVESLL 1265
VKDTVED I L + + S + K Q LT++D+ L
Sbjct: 1232 VKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLF 1276
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 138/331 (41%), Gaps = 78/331 (23%)
Query: 130 SGATLIVCPAPILPQWHDEIIRH-TRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TLIVCP ++ QW DE+ + T L +Y G T D +LA D+V
Sbjct: 631 AAGTLIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTK-------DPHELAKYDVV 683
Query: 189 ITTYDVLKEDLSHDS-DR--------HEGDRHLLRFQKRYPVIPT--------------- 224
ITTY ++ ++ DR H+G + F +P
Sbjct: 684 ITTYSLVSVEVPKQPRDRADEEKGGIHDGGVESVGFGSNKKDLPNSQKKGTKKRKHMDCE 743
Query: 225 -------LLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLY 277
L ++ W+RV LDEAQ +++ T A+ LH+K WC++GTPIQ + DLY
Sbjct: 744 PVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLY 803
Query: 278 GLLRFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE---LD 334
RFLK P+++Y+ + E +++P + I K++M R +K + D +
Sbjct: 804 SYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYKTLQAILKKVMLRRTKDTLLDGKPVIS 863
Query: 335 LPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDP 394
LP + L + + E FY + C DS D
Sbjct: 864 LPPKSIELRRVDFTKEERDFYSKLE--C---------------------------DSRDQ 894
Query: 395 LITHTEAG-------KLLNALLKLRQACCHP 418
+ EAG +L LL+LRQAC HP
Sbjct: 895 FKEYAEAGTVKQNYVNILLMLLRLRQACGHP 925
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 15/136 (11%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNGTKGCEKST 1162
EK +VF+ W +LD+LE ++ I + R G A+ F +T
Sbjct: 1115 EKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDF------------NT 1162
Query: 1163 PKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
+ V+++ ++ + GLN++ A HV++++ NP E QAI R HRIGQ + RF
Sbjct: 1163 LPDVSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFT 1222
Query: 1223 VKDTVEDSIYKLNRSR 1238
VKDTVED I L + +
Sbjct: 1223 VKDTVEDRILALQQKK 1238
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 118 bits (296), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 140/336 (41%), Gaps = 81/336 (24%)
Query: 130 SGATLIVCPAPILPQWHDEII-RHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TLIVCPA ++ QW E+ + T L IY G T D +LA D+V
Sbjct: 342 AAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTK-------DPIELAKYDVV 394
Query: 189 ITTY-----DVLKEDLSHDSDRHEGDRHLLRF-------QKRYPVIPTL----------- 225
+TTY +V K+ L D + E + +KR V+ T
Sbjct: 395 MTTYAIVSNEVPKQPLVDDDENDEKNSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNN 454
Query: 226 -----------LTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLD 274
L ++ W+RV LDEAQ ++++ T L +K WC++GTPIQ +D
Sbjct: 455 AGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTID 514
Query: 275 DLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE-- 332
DLY RFLK P+ Y+ + ++ P + + + + + IM R +K + D
Sbjct: 515 DLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQP 574
Query: 333 -LDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDS 391
++LP + LS + S E FY + +ES DS
Sbjct: 575 IINLPPKTINLSQVDFSVEERSFYVK------------LES-----------------DS 605
Query: 392 SDPLITHTEAGKL-------LNALLKLRQACCHPQV 420
+ AG L L LL+LRQAC HPQ+
Sbjct: 606 RSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQL 641
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 28/255 (10%)
Query: 990 DEETCPV--CQEKLGNQRMVFQCGHFTCCKC--LFAMTEQRLQHSKTHNWVMCPTCRQHT 1045
DE+TCP C+E+L + +VF C L + + H K+ Q+
Sbjct: 710 DEDTCPAPRCREQLAHD-VVFSKSTLRSCVADDLGCSSSEDNSHDKS--------VFQNG 760
Query: 1046 DFGN--IAYAVDAQNESSNSSMQHTVDSCEKCETSISVKGSYGTKIEAVT----RRILSI 1099
+F + I +D SN ++ + + +S + VT + S
Sbjct: 761 EFSSSKIKAVLDILQSLSNQGTSNSTQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKST 820
Query: 1100 KATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCE 1159
+ K ++FS W +LD++E + N+I F R+ G I + R + E
Sbjct: 821 PSNGGPIKTIIFSQWTGMLDLVELSLIENSIEFRRLDG---TMSLIARDRAVK------E 871
Query: 1160 KSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIH 1219
S ++V+++ ++ G GLN++ A HV+L++ NP E QAI R HRIGQ +
Sbjct: 872 FSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVT 931
Query: 1220 RFIVKDTVEDSIYKL 1234
R +K+TVED I L
Sbjct: 932 RITIKNTVEDRILAL 946
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 56/300 (18%)
Query: 128 IASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADI 187
++ TLIVCP ++ W ++ HT PG LK +Y G T D+++L DI
Sbjct: 336 VSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTD-------DVNELMKYDI 388
Query: 188 VITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNAT 247
V+TTY L + S + PV ++ W R+ LDEA +++
Sbjct: 389 VLTTYGTLAVEESWEDS---------------PV-----KKMEWLRIILDEAHTIKNANA 428
Query: 248 AATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDI 307
+ + +L + W +TGTPIQ DLY L+ FL+ PF+ +W +++ P +G+
Sbjct: 429 QQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNK 488
Query: 308 GAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAH 367
+ + I R +K+ L + E C ++ LSP E Y +A
Sbjct: 489 KGLSRLQVLMATISLRRTKEKSLIGLPPKTVETC--YVELSPEERQLYDHMEG----EAK 542
Query: 368 EVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQAC-----CHPQVGS 422
V+++L N+ GS N S+ +L+ +L+LRQ C C P++ S
Sbjct: 543 GVVQNLINN-------GSLMRNYST-----------VLSIILRLRQLCDDMSLCPPELRS 584
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 39/313 (12%)
Query: 960 LESPDSSSFIQETTKISNTKEEKGALISKTDEETCPVCQEKLGNQRMVFQCGHFTCCKCL 1019
L S +S+ +++ T ++ A + ++ CP+C N ++ +C H C C+
Sbjct: 582 LRSFTTSTSVEDVTDKPELLQKLVAALQDGEDFDCPICISPPTNI-IITRCAHIFCRACI 640
Query: 1020 FAMTEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQNESSNSSMQHTVDSCEKCETSI 1079
Q LQ SK +CP CR ++ A +SSN+ +
Sbjct: 641 L----QTLQRSKP----LCPLCRGSLTQSDLYNAPPPPPDSSNTDGED------------ 680
Query: 1080 SVKGSYGTKIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGG- 1138
+ + +K+ A+ +++ + + K +VFS + +L +LE A T +R+ G
Sbjct: 681 AKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAM 740
Query: 1139 --RKAQVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLN 1196
+K I +F E + P VLL ++ G+NL A V L +P N
Sbjct: 741 TVKKRTQVIGEFGNP-------ELTGPV---VLLASLKASGTGINLTAASRVYLFDPWWN 790
Query: 1197 PAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSR---SNHSFISGNTKNQDQ 1253
PA E QA+ R+HRIGQK + + R I ++++E+ + +L + + +N +F + +D+
Sbjct: 791 PAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAF--KRRQKKDE 848
Query: 1254 PVLTLKDVESLLS 1266
+ ++DV +L+S
Sbjct: 849 REVNVEDVVALMS 861
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 58/296 (19%)
Query: 130 SGATLIVCPAPILPQWHDEII-RHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
SG TLIVCPA ++ QW E+ + + L ++ G T D +++A D+V
Sbjct: 114 SGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTK-------DPTEIAIYDVV 166
Query: 189 ITTYDVLKEDLSHDS--DRHEGDRHLLRFQKRYPVIPTL--LTRIYWWRVCLDEAQMVES 244
+TTY ++ ++ + +R++ R + P + L R+ W RV LDEA +++
Sbjct: 167 MTTYAIVTNEVPQNPMLNRYDSMRGRESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKN 226
Query: 245 NATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEK 304
+ T + L +K WC+TGTPI+ K+DDLY RFL+ P+ + + ++ P +K
Sbjct: 227 HRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDK 286
Query: 305 GDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVR 364
+ + I + IM R +K E FY++
Sbjct: 287 KPLHGYKKLQAILRGIMLRRTK------------------------EWSFYRKLE----- 317
Query: 365 DAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHPQV 420
LN + E D + H LL LL+LRQAC HPQ+
Sbjct: 318 -------------LNSRWKFEEYAADGT----LHEHMAYLLVMLLRLRQACNHPQL 356
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 1169 LLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVE 1228
+L+ ++ G GLN++ A HV+L++ NP E QAI R HRIGQ + R +K+TVE
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569
Query: 1229 DSIYKLNRSRSN 1240
+ I L+ + N
Sbjct: 570 ERILTLHERKRN 581
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 81/336 (24%)
Query: 130 SGATLIVCPAPILPQWHDEIIRHTRPGS-LKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
+ TLIVCPA ++ QW E+ S L +Y G T D ++LA D+V
Sbjct: 413 AAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTK-------DPNELAEYDVV 465
Query: 189 ITTYDVLKEDLSH-------DSDRHEGDRHLL-----RFQKRYPVIPT------------ 224
+TTY ++ + + ++D DR+ L +KR V+
Sbjct: 466 VTTYAIVTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKST 525
Query: 225 ----------LLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLD 274
L ++ W+R+ LDEAQ +++ T L +K WC++GTPIQ +D
Sbjct: 526 NDTSSEPDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTID 585
Query: 275 DLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADE-- 332
DLY RFL+ P+ Y+ + ++ P + + + + IM R +K + D
Sbjct: 586 DLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKP 645
Query: 333 -LDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDS 391
++LP + LS + S E FY++ +E+ DS
Sbjct: 646 IINLPPKVVNLSQVDFSVAERSFYKK------------LEA-----------------DS 676
Query: 392 SDPLITHTEAGKLLNALLKLR-------QACCHPQV 420
+ +AG L + QAC HPQ+
Sbjct: 677 RSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQL 712
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 38/257 (14%)
Query: 990 DEETCPV--CQEKLGNQRMVFQCGHFTCCKCLFAMTEQRLQHSKTHNWVMCPTCRQHTDF 1047
DE TCPV C+++L + +VF C T S +H+ + + Q DF
Sbjct: 782 DENTCPVPRCKQQLA-RDVVFSESSLRNC------TSDDSGCSSSHDNGLDRSVFQKRDF 834
Query: 1048 --GNIAYAVD-----AQNESSNSSMQHTVDSCEKCETSISVKGSYGTKIEAVTRRILSIK 1100
I +D +Q +S NS+ + S + V T +E + R+ S
Sbjct: 835 CSSKIKAVLDILQSLSQPDSPNSAQHGQMPSSSRPYDDDDV-----TIVEPM--RLHSSS 887
Query: 1101 ATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQV---AINQFRGKQNGTKG 1157
+ K ++FS W +LD++E + I F R+ G A+ +F K +
Sbjct: 888 PSQGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPD---- 943
Query: 1158 CEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTL 1217
++V+L+ ++ G GLN++ A HV+L++ NP E QAI R HRIGQ
Sbjct: 944 --------VKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVT 995
Query: 1218 IHRFIVKDTVEDSIYKL 1234
+ R +KDTVED I KL
Sbjct: 996 VTRITIKDTVEDRILKL 1012
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 29/253 (11%)
Query: 991 EETCPVCQEKLGNQRMVFQCGHFTCCKCLFAMTEQRLQHSKTHNWVMCPTCRQ--HTDFG 1048
E+ C +C + +V C H C CL S + V CPTC + D+
Sbjct: 576 EQECGLCHDP-AEDYVVTSCAHVFCKACLIGF-------SASLGKVTCPTCSKLLTVDWT 627
Query: 1049 NIAYAVDAQNESSNSSMQHTVDSCEKCETSISVKGSYGTKIEAVTRRILSIKATDHKEKV 1108
A D ++++S ++++ S + TKIEA+ I + D K
Sbjct: 628 TKA---DTEHKASKTTLKGFRASSILNRIKLD-DFQTSTKIEALREEIRFMVERDGSAKA 683
Query: 1109 LVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNGTKGCEKSTPKS 1165
+VFS + LD++ + ++ V++ G AIN+F K P
Sbjct: 684 IVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKF-----------KEDP-D 731
Query: 1166 IQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKD 1225
+V L+ ++ G LNL A HV +++P NPA E QA R+HRIGQ + RFI+++
Sbjct: 732 CRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIEN 791
Query: 1226 TVEDSIYKLNRSR 1238
TVE+ I +L + +
Sbjct: 792 TVEERILRLQKKK 804
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 93/239 (38%), Gaps = 75/239 (31%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
+LL + W R+ LDEA ++ + L + + W ++GTP+Q ++ +LY L+RFL
Sbjct: 347 SLLHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFL 406
Query: 284 KVSPFNTYR-----------------------------WWAEVLRDP------YEKGDIG 308
++ P++ Y WW + + P + G
Sbjct: 407 QIRPYSYYFCKDCDCRILDYVAHQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRA 466
Query: 309 AMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHE 368
+ H + K I+ R +K A +L LP +
Sbjct: 467 MILLKHKVLKDILLRRTKLGRAADLALPPR------------------------------ 496
Query: 369 VIESLRNDILN-RKVPGSESL-NDSSDPLITHTEAGKLLN-------ALLKLRQACCHP 418
I +LR D L+ ++ ESL +S T+ EAG L+N L +LRQA HP
Sbjct: 497 -IITLRRDTLDVKEFDYYESLYKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLRQAVDHP 554
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 129 ASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
A+G TL++CP + QW +EI R T PGS K +Y G + +I + + D V
Sbjct: 192 AAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAK-------NIKEFMNYDFV 244
Query: 189 ITTYDVLKED 198
+TTY ++ +
Sbjct: 245 LTTYSTVESE 254
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 15/157 (9%)
Query: 1087 TKIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QV 1143
TKIEA+ I + D K +VFS + LD++ +A + ++ V++ G
Sbjct: 507 TKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDA 566
Query: 1144 AINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQA 1203
A+ F+ + + C +VLL+ +Q G LNL A HV +++P NPA E QA
Sbjct: 567 ALKNFKEEPD----C--------RVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQA 614
Query: 1204 ISRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSRSN 1240
R+HRIGQ + RFI++ TVE+ I L + + +
Sbjct: 615 QDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKED 651
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 56/302 (18%)
Query: 129 ASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIV 188
A G TL++ P L QW DEI R T PGS + Y G + ++ L + D V
Sbjct: 188 AVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDK-------NVQKLMNYDFV 240
Query: 189 ITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATA 248
+TT +++ + D EG + + L I W R+ +DEA +++ ++
Sbjct: 241 LTTSPIVENEYRKD----EGVDETM----------SPLHSIKWNRIIVDEAHDIKNRSSR 286
Query: 249 ATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIG 308
+ L + + W ++GTP+Q +D+LY L+ + ++ F Y +A
Sbjct: 287 TAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFF--YSTYASF----------- 333
Query: 309 AMEFTHTIF-KQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAH 367
A TH F + + + L +P + E + + + + ++ RDA
Sbjct: 334 AFRHTHITFARNVTVKFLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKR-----RDAL 388
Query: 368 EVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLN-------ALLKLRQACCHPQV 420
V+E+ D S++ D + +AG L+N L++LRQA HP +
Sbjct: 389 SVVEA---DFYESLYKVSKTTFDG------YIQAGTLMNNYAHIFGLLIRLRQAVDHPYL 439
Query: 421 GS 422
S
Sbjct: 440 VS 441
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative |
chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVA 1144
K++ + + ++ +K H+ VL+++ + L +LE F N + R+ G G + QV
Sbjct: 525 KLQLLDKMMVKLKEQGHR--VLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 582
Query: 1145 INQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAI 1204
I++F +N + C LL + G G+NL A V++ + NP A+ QA+
Sbjct: 583 IDRFNA-ENSNRFC----------FLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAM 631
Query: 1205 SRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSR 1238
+RVHR+GQ NK +I+R I K TVE+ + ++ +++
Sbjct: 632 ARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNK 665
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative |
chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVA 1144
K++ + + ++ +K H+ VL+++ + L +LE F N + R+ G G + QV
Sbjct: 484 KLQLLDKMMVKLKEQGHR--VLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVR 541
Query: 1145 INQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAI 1204
I++F +N + C LL + G G+NL A V++ + NP A+ QA+
Sbjct: 542 IDRFNA-ENSNRFC----------FLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAM 590
Query: 1205 SRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSR 1238
+RVHR+GQ NK +I+R I K TVE+ + ++ +++
Sbjct: 591 ARVHRLGQTNKVMIYRLIHKGTVEERMMEITKNK 624
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 134/312 (42%), Gaps = 67/312 (21%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIY-EGVRDTSF----SNTSLMDISDLASA 185
G L+V PA +L W DEI R LKT Y G+++ + N M D A
Sbjct: 636 GPFLVVAPASVLNNWADEISRFC--PDLKTLPYWGGLQERTILRKNINPKRMYRRD-AGF 692
Query: 186 DIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESN 245
I+IT+Y +L D ++Y R+ W + LDEAQ ++S+
Sbjct: 693 HILITSYQLLVTD------------------EKY------FRRVKWQYMVLDEAQAIKSS 728
Query: 246 ATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTY----RWWAEVLRDP 301
++ + L + ++ +TGTPIQ + +L+ LL F+ F+ + W+++ + +
Sbjct: 729 SSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENH 788
Query: 302 YEKGDI---GAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQ 358
E G + H I K M R KK V EL ++ E LS ++ FYQ
Sbjct: 789 AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELT--TKTEVTVHCKLSSRQQAFYQ-- 844
Query: 359 HETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
+++N I L DS+ T + L+N +++LR+ C HP
Sbjct: 845 -------------AIKNKI------SLAELFDSNRGQFTDKKVLNLMNIVIQLRKVCNHP 885
Query: 419 QV-----GSSGL 425
++ GSS L
Sbjct: 886 ELFERNEGSSYL 897
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 1099 IKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGC 1158
++A +H+ VL+F+ +L++LE ++R+ G + R Q+ +
Sbjct: 1218 LRAGNHR--VLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRS--- 1272
Query: 1159 EKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLI 1218
I V LL + G G+NL A V+ E NP + QA+ R HR+GQ +
Sbjct: 1273 ------DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1326
Query: 1219 HRFIVKDTVEDSI-YKLNRSRSNHSFISGNTKNQDQPVLTLKDVESLL 1265
+R I K+TVE+ I ++ ++ + + Q L DV SLL
Sbjct: 1327 YRLICKETVEEKILHRASQKNTVQQLVMTGGHVQGDDFLGAADVVSLL 1374
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 16/154 (10%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVA 1144
K++ + + ++ +K H+ VL+++ + +LD+LE + R+ G G + Q+
Sbjct: 596 KLQLLDKMMVKLKEQGHR--VLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIR 653
Query: 1145 INQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAI 1204
I++F K N K C LL + G G+NL A V++ + NP A+ QA+
Sbjct: 654 IDRFNAK-NSNKFC----------FLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 702
Query: 1205 SRVHRIGQKNKTLIHRFIVKDTVEDSIYKLNRSR 1238
+R HR+GQ NK +I+R I + T+E+ + +L + +
Sbjct: 703 ARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKK 736
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
+L I W + +DE +++ + + S H +TGTP+Q LD+L+ L+ FL
Sbjct: 409 AVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFL 468
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F + + E +D ++ I + H + + R KK V D+P ++E +
Sbjct: 469 DAGKFGSLEEFQEEFKDINQEEQISRL---HKMLAPHLLRRVKKDVMK--DMPPKKELIL 523
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ LS +++ +Y+ I + +L +K SLN
Sbjct: 524 RVDLSSLQKEYYK------------AIFTRNYQVLTKKGGAQISLN-------------- 557
Query: 404 LLNALLKLRQACCHP 418
N +++LR+ CCHP
Sbjct: 558 --NIMMELRKVCCHP 570
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQ 1147
K+E + R + +KATDH+ VL FS+ +LDV+E ++R+ G Q
Sbjct: 1074 KLEMLDRMLPKLKATDHR--VLFFSTMTRLLDVMEDYLTLKGYKYLRLDG---------Q 1122
Query: 1148 FRGKQNGT--KGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAIS 1205
G G G KS + LL I+ G G+NL A V+L + NP + QA +
Sbjct: 1123 TSGGDRGALIDGFNKSG-SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181
Query: 1206 RVHRIGQKNKTLIHRFIVKDTVEDSI-----YKLNRSRSN--HSFISGNTKNQDQ 1253
R HRIGQK L+ RF ++VE+ + +KL + + F NT +D+
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR 1236
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVIT 190
G L+V P+ +LP W EI + S+ +Y G D + L IV
Sbjct: 804 GPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCGTPD---------ERRKLFKEQIVHQ 852
Query: 191 TYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAAT 250
++VL + ++H+ + L++I+W + +DE ++ NA+
Sbjct: 853 KFNVLLTTYEYLMNKHDRPK---------------LSKIHWHYIIIDEGHRIK-NASCKL 896
Query: 251 EMALRLH-SKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYE 303
L+ + S H +TGTP+Q L++L+ LL FL + FN+ +++ P++
Sbjct: 897 NADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQ 950
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQ 1147
K+E + R + +KATDH+ VL FS+ +LDV+E ++R+ G Q
Sbjct: 1074 KLEMLDRMLPKLKATDHR--VLFFSTMTRLLDVMEDYLTLKGYKYLRLDG---------Q 1122
Query: 1148 FRGKQNGT--KGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAIS 1205
G G G KS + LL I+ G G+NL A V+L + NP + QA +
Sbjct: 1123 TSGGDRGALIDGFNKSG-SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181
Query: 1206 RVHRIGQKNKTLIHRFIVKDTVEDSI-----YKLNRSRSN--HSFISGNTKNQDQ 1253
R HRIGQK L+ RF ++VE+ + +KL + + F NT +D+
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR 1236
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVIT 190
G L+V P+ +LP W EI + S+ +Y G D + L IV
Sbjct: 804 GPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCGTPD---------ERRKLFKEQIVHQ 852
Query: 191 TYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAAT 250
++VL + ++H+ + L++I+W + +DE ++ NA+
Sbjct: 853 KFNVLLTTYEYLMNKHDRPK---------------LSKIHWHYIIIDEGHRIK-NASCKL 896
Query: 251 EMALRLH-SKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYE 303
L+ + S H +TGTP+Q L++L+ LL FL + FN+ +++ P++
Sbjct: 897 NADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQ 950
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQ 1147
K+E + R + +KATDH+ VL FS+ +LDV+E ++R+ G Q
Sbjct: 1074 KLEMLDRMLPKLKATDHR--VLFFSTMTRLLDVMEDYLTLKGYKYLRLDG---------Q 1122
Query: 1148 FRGKQNGT--KGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAIS 1205
G G G KS + LL I+ G G+NL A V+L + NP + QA +
Sbjct: 1123 TSGGDRGALIDGFNKSG-SPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQA 1181
Query: 1206 RVHRIGQKNKTLIHRFIVKDTVEDSI-----YKLNRSRSN--HSFISGNTKNQDQ 1253
R HRIGQK L+ RF ++VE+ + +KL + + F NT +D+
Sbjct: 1182 RAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDR 1236
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVIT 190
G L+V P+ +LP W EI + S+ +Y G D + L IV
Sbjct: 804 GPFLVVVPSSVLPGWQSEI--NFWAPSIHKIVYCGTPD---------ERRKLFKEQIVHQ 852
Query: 191 TYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAAT 250
++VL + ++H+ + L++I+W + +DE ++ NA+
Sbjct: 853 KFNVLLTTYEYLMNKHDRPK---------------LSKIHWHYIIIDEGHRIK-NASCKL 896
Query: 251 EMALRLH-SKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYE 303
L+ + S H +TGTP+Q L++L+ LL FL + FN+ +++ P++
Sbjct: 897 NADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQ 950
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 1098 SIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNG 1154
S+K + H+ VL+FS W +LD+LE +T+ R+ G + Q ++ F
Sbjct: 599 SMKKSGHR--VLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTF------ 650
Query: 1155 TKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKN 1214
+ KSI LL + G GLNL A V++ + NP + QA R HRIGQ
Sbjct: 651 ------NNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTK 704
Query: 1215 KTLIHRFIVKDTVEDSIYKLNRSR 1238
I R + K TV+++IY++ + +
Sbjct: 705 PVTIFRLVTKSTVDENIYEIAKRK 728
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 129/320 (40%), Gaps = 50/320 (15%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEG-------------VRDTSFSNTSLM 177
G L+V PA +L W DEI R LKT Y G + F +T ++
Sbjct: 636 GPFLVVAPASVLNNWADEISRFC--PDLKTLPYWGGLQERTILRKNINPKRVMFFSTWII 693
Query: 178 DISDLASADIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLD 237
A I I SD G L+ + R+ W + LD
Sbjct: 694 SFDPWAVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFRRVKWQYMVLD 753
Query: 238 EAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTY----RW 293
EAQ ++S+++ + L + ++ +TGTPIQ + +L+ LL F+ F+ + W
Sbjct: 754 EAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEW 813
Query: 294 WAEVLRDPYEKGDI---GAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPV 350
+++ + + E G + H I K M R KK V EL ++ E LS
Sbjct: 814 FSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELT--TKTEVTVHCKLSSR 871
Query: 351 EEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLK 410
++ FYQ +++N I L DS+ T + L+N +++
Sbjct: 872 QQAFYQ---------------AIKNKI------SLAELFDSNRGQFTDKKVLNLMNIVIQ 910
Query: 411 LRQACCHPQV-----GSSGL 425
LR+ C HP++ GSS L
Sbjct: 911 LRKVCNHPELFERNEGSSYL 930
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%)
Query: 1099 IKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGC 1158
++A +H+ VL+F+ +L++LE ++R+ G + R Q+ +
Sbjct: 1251 LRAGNHR--VLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRS--- 1305
Query: 1159 EKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLI 1218
I V LL + G G+NL A V+ E NP + QA+ R HR+GQ +
Sbjct: 1306 ------DIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTV 1359
Query: 1219 HRFIVKDTVEDSI-YKLNRSRSNHSFISGNTKNQDQPVLTLKDVESLL 1265
+R I K+TVE+ I ++ ++ + + Q L DV SLL
Sbjct: 1360 YRLICKETVEEKILHRASQKNTVQQLVMTGGHVQGDDFLGAADVVSLL 1407
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEKSTPKSI 1166
+VL+FS +L++++ + +N +F+R+ G KA + Q G
Sbjct: 750 RVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEG---------HVA 800
Query: 1167 QVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDT 1226
+ LL Q G GL L +A V++V+P NP+ + Q++ R +RIGQ +++R + T
Sbjct: 801 PIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSAT 860
Query: 1227 VEDSIYK 1233
VE+ IY+
Sbjct: 861 VEEKIYR 867
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 34/178 (19%)
Query: 113 VCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFS 172
Q+CS L S + A L+V P +LP W E+ T S T Y G T
Sbjct: 409 TMQICSFLAGLFHSKLIKRA-LVVAPKTLLPHWMKELA--TVGLSQMTREYYGT-STKAR 464
Query: 173 NTSLMDISDLASADIVITTYDVLK--------EDLSHDSDRHEGDRHLLRFQKRYPVIPT 224
L I L I++TTYD+++ +D D D +G++
Sbjct: 465 EYDLHHI--LQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNK-------------- 508
Query: 225 LLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRF 282
W + LDE ++++ T + L + S H I+GTPIQ L +L+ L F
Sbjct: 509 ------WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNF 560
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE AN ++ RM G ++ I++F ++
Sbjct: 745 RVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSED---------- 794
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
+ V +L + G G NL A V++ +P NP+ + QA R RIGQK ++R I
Sbjct: 795 --MFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLIT 852
Query: 1224 KDTVEDSIY 1232
+ T+E+ +Y
Sbjct: 853 RGTIEEKVY 861
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 56/299 (18%)
Query: 133 TLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVITTY 192
++IVCP+ ++ W EI ++ L Y G ++ SL + + +++IT+Y
Sbjct: 1540 SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVG---SAQDRVSLRE--QFNNHNVIITSY 1594
Query: 193 DVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAATEM 252
DV+++D+ + LT+ W LDE ++++ + T
Sbjct: 1595 DVVRKDVDY------------------------LTQFSWNYCILDEGHIIKNAKSKITAA 1630
Query: 253 ALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAE-------VLRDPY--- 302
+L ++H ++GTPIQ + +L+ L FL T R + RDP
Sbjct: 1631 VKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSA 1690
Query: 303 --EKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHE 360
+ + AME H + R +K+ V DLP + + LSPV+ Y++
Sbjct: 1691 KDAEAGVLAMEALHKQVMPFLLRRTKEEVLS--DLPEKIIQDRYCDLSPVQLKLYEQFSG 1748
Query: 361 TCVRDAHEVIESLRNDILNRKVPGS-ESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
+ A + I S+ KV GS +S N P T + L LLKL C HP
Sbjct: 1749 SS---AKQEISSI------IKVDGSADSGNADVAPTKASTHVFQALQYLLKL---CSHP 1795
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1105 KEKVLVFSSWNDVLDVLEH-AFAAN--NITFVRMKGGRKAQVAINQFRGKQNGTKGCEKS 1161
+ +VL+F+ +LD++E F A+ ++T++R+ G + K+ S
Sbjct: 1861 QHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPE--------KRFEIVKAFNS 1912
Query: 1162 TPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRF 1221
P +I VLLL G GLNL A +V +E NP + QA+ R HR+GQK +HR
Sbjct: 1913 DP-TIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRL 1971
Query: 1222 IVKDTVEDSIYKLNRSRS-------NHSFISGNTKNQDQ 1253
I++ T+E+ + L + + N S T N DQ
Sbjct: 1972 IMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQ 2010
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 56/299 (18%)
Query: 133 TLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVITTY 192
++IVCP+ ++ W EI ++ L Y G ++ SL + + +++IT+Y
Sbjct: 1509 SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVG---SAQDRVSLRE--QFNNHNVIITSY 1563
Query: 193 DVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAATEM 252
DV+++D+ + LT+ W LDE ++++ + T
Sbjct: 1564 DVVRKDVDY------------------------LTQFSWNYCILDEGHIIKNAKSKITAA 1599
Query: 253 ALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAE-------VLRDPY--- 302
+L ++H ++GTPIQ + +L+ L FL T R + RDP
Sbjct: 1600 VKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYGKPLLAARDPKCSA 1659
Query: 303 --EKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHE 360
+ + AME H + R +K+ V DLP + + LSPV+ Y++
Sbjct: 1660 KDAEAGVLAMEALHKQVMPFLLRRTKEEVLS--DLPEKIIQDRYCDLSPVQLKLYEQFSG 1717
Query: 361 TCVRDAHEVIESLRNDILNRKVPGS-ESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
+ A + I S+ KV GS +S N P T + L LLKL C HP
Sbjct: 1718 SS---AKQEISSI------IKVDGSADSGNADVAPTKASTHVFQALQYLLKL---CSHP 1764
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1105 KEKVLVFSSWNDVLDVLEH-AFAAN--NITFVRMKGGRKAQVAINQFRGKQNGTKGCEKS 1161
+ +VL+F+ +LD++E F A+ ++T++R+ G + K+ S
Sbjct: 1830 QHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPE--------KRFEIVKAFNS 1881
Query: 1162 TPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRF 1221
P +I VLLL G GLNL A +V +E NP + QA+ R HR+GQK +HR
Sbjct: 1882 DP-TIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRL 1940
Query: 1222 IVKDTVEDSIYKLNRSRS-------NHSFISGNTKNQDQ 1253
I++ T+E+ + L + + N S T N DQ
Sbjct: 1941 IMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQ 1979
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 1097 LSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQN 1153
L ++ + K +VL+FS +LD+L + F R+ G KA Q A++ F
Sbjct: 947 LLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHF----- 1001
Query: 1154 GTKGCEKSTPKSIQVLLLL-IQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQ 1212
+ P S LL + G G+NL A VV+ + NP + QA+SR HRIGQ
Sbjct: 1002 -------NAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQ 1054
Query: 1213 KNKTLIHRFIVKDTVEDSI 1231
+ I+RF+ +VE+ I
Sbjct: 1055 QEVVNIYRFVTSKSVEEEI 1073
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 65/295 (22%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDT-----SFSNTSLMDISDLASA 185
G L+V P L W E R PG + +Y G R + + + +
Sbjct: 675 GPFLVVVPLSTLANWAKEF-RKWLPG-MNIIVYVGTRASREVCQQYEFYNEKKVGRPIKF 732
Query: 186 DIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESN 245
+ ++TTY+V+ +D +L++I W + +DEA ++++
Sbjct: 733 NALLTTYEVVLKD------------------------KAVLSKIKWIYLMVDEAHRLKNS 768
Query: 246 ATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRD--PYE 303
L +K+ ITGTP+Q +++L+ LL FL F + E ++ +
Sbjct: 769 EAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFN 828
Query: 304 KGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCV 363
+ ++ + H + + R K V E LP + E + + +SP+++ +Y+ E
Sbjct: 829 ESELANL---HLELRPHILRRVIKDV--EKSLPPKIERILRVEMSPLQKQYYKWILE--- 880
Query: 364 RDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
R+ H+ LN+ V G++ LLN +++L++ C HP
Sbjct: 881 RNFHD---------LNKGVRGNQV---------------SLLNIVVELKKCCNHP 911
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 1105 KEKVLVFSSWNDVLD-VLEHAFAANNIT----FVRMKGG---RKAQVAINQFRGKQNGTK 1156
KEKVLV+S + D L ++E A + T + M G R Q I+ F +G+K
Sbjct: 943 KEKVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSK 1002
Query: 1157 GCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKT 1216
VLL + + G++L+ A VV+++ + NP+ E+QAISR RIGQK
Sbjct: 1003 -----------VLLASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAV 1051
Query: 1217 LIHRFIVKDTVEDSIY-KLNRSRSNHSFISGNTKNQDQPV 1255
I+ +VKDT E + Y K + + +T +D+P+
Sbjct: 1052 FIYHLMVKDTSEWNKYCKQSEKHRISELVFSSTNEKDKPI 1091
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 1104 HKE--KVLVFSSWNDVLDVLEHAFAANNI-----TFVRMKGGRKA---QVAINQFRGKQN 1153
HKE +VL+FS +LD+LE NI TF R+ G Q AI +F +N
Sbjct: 1017 HKEGHRVLIFSQMTKLLDILEDYL---NIEFGPKTFERVDGSVAVADRQAAIARFNQDKN 1073
Query: 1154 GTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQK 1213
V LL + G+NL A V++ + NP A+ QA++R HRIGQ
Sbjct: 1074 RF------------VFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQS 1121
Query: 1214 NKTLIHRFIVKDTVEDSIYKLNRSR 1238
+ L++R +V+ +VE+ I +L + +
Sbjct: 1122 KRLLVYRLVVRASVEERILQLAKKK 1146
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKGG---RKAQVAINQFRGKQNGTKGCEKSTP 1163
+ L+F+ +LDVLE T++R+ G + Q + +F + P
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRF-----------NTNP 1141
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
K I + +L + G G+NL+ A V+ + NPA + QA R HRIGQ + I+R I
Sbjct: 1142 K-IFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS 1200
Query: 1224 KDTVEDSIY-KLNRSRSNHSFISGNTKNQDQPVLTLKDVESLLSRTPVTMPESDEN---- 1278
+ T+E++I K N+ R + + N + + L +E +T + E
Sbjct: 1201 ESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFSGHKALTTKDEKETSKHC 1260
Query: 1279 ----PIANADL 1285
P++NAD+
Sbjct: 1261 GADIPLSNADV 1271
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 39/234 (16%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEG-VRDTSFSNTSLMDISDLASADIVI 189
G LIV P ++ W E ++ + K Y G ++ M L S + I
Sbjct: 586 GPHLIVVPTSVMLNWETEFLKWC--PAFKILTYFGSAKERKLKRQGWMK---LNSFHVCI 640
Query: 190 TTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAA 249
TTY ++ +D + R W + LDEA ++++ +
Sbjct: 641 TTYRLVIQD------------------------SKMFKRKKWKYLILDEAHLIKNWKSQR 676
Query: 250 TEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPY------- 302
+ L +SK +TGTP+Q L +L+ L+ FL F +++ + + +P
Sbjct: 677 WQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIAGMVEGQ 736
Query: 303 EKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQ 356
EK + ++ H + + + R K+ V E LPS+ E + + LS + + Y+
Sbjct: 737 EKINKEVIDRLHNVLRPFLLRRLKRDV--EKQLPSKHEHVIFCRLSKRQRNLYE 788
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1092 VTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGG---RKAQVAINQF 1148
V R+L+ +++++ S++ LD+ F+R+ G K Q +N+
Sbjct: 536 VLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRL 595
Query: 1149 RGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVH 1208
K LL + G GLNL+ A +VL +P NPA + QA +RV
Sbjct: 596 -----------NDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVW 644
Query: 1209 RIGQKNKTLIHRFIVKDTVEDSIYKLNRSR 1238
R GQK + ++RF+ T+E+ +Y+ S+
Sbjct: 645 RDGQKKRVYVYRFLSTGTIEEKVYQRQMSK 674
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 1042 RQHTDFGNIAYAVDAQNESSNSSMQHTVDSCEKC--ETSISVKGSYGT-----------K 1088
+Q TD G + + + S+Q+ KC + V G Y K
Sbjct: 658 KQVTDMGRVGLQTGS---GKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKPEIVRASGK 714
Query: 1089 IEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQF 1148
E + R + ++ H+ +L+FS ++DVLE N+ ++R+ G K
Sbjct: 715 FELLDRLLPKLRKAGHR--ILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTD------ 766
Query: 1149 RGKQNGTKGCEKSTPKSIQVLLLL-IQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRV 1207
Q G + + P S + LL + G GLNL A V++ + NP + QA R
Sbjct: 767 ---QRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRA 823
Query: 1208 HRIGQKNKTLIHRFIVKDTVEDSI 1231
HRIGQK + + + +VE+ I
Sbjct: 824 HRIGQKKEVRVFVLVSVGSVEEVI 847
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 78/335 (23%)
Query: 113 VCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFS 172
Q S + E+ G LIV P +LP W +E T S+ +Y+G + +
Sbjct: 435 TIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFA--TWVPSIAAFLYDGRLEERKA 492
Query: 173 NTSLMDISDLASADIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWW 232
I+ +++IT YD++ D L +I W+
Sbjct: 493 IRE--KIAGEGKFNVLITHYDLIMRD------------------------KAFLKKIEWY 526
Query: 233 RVCLDEAQMVESNATAATEMALRLHS-KHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTY 291
+ +DE ++++ +A + L + K +TGTPIQ L +L+ LL FL FN+
Sbjct: 527 YMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSV 586
Query: 292 RWWAEVLRDPYEKGDIGAMEFT-----------HTIFKQIMWRSSKKHVADELDLPSQEE 340
+ + E P+ D G + T H + + + R K V E LP + +
Sbjct: 587 QNFEEWFNAPF--ADRGNVSLTDEEELLIIHRLHHVIRPFILRRKKDEV--EKFLPGKTQ 642
Query: 341 CLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTE 400
+ +S ++ +Y++ V D V T
Sbjct: 643 VILKCDMSAWQKVYYKQ-----VTDMGRV--------------------------GLQTG 671
Query: 401 AGK---LLNALLKLRQACCHPQVGSSGLRSLQQSP 432
+GK L N ++LR+ C HP + G ++ + P
Sbjct: 672 SGKSKSLQNLTMQLRKCCNHPYLFVGGDYNMWKKP 706
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 |
chromatin remodeling 1 | chr5:26649050-26652869 FORWARD
LENGTH=764
Length = 764
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 1101 ATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEK 1160
A +HK VL+FS W +LD++++ F+ R+ G K Q + + C
Sbjct: 538 ANNHK--VLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSC-- 593
Query: 1161 STPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHR 1220
+ LL + G G+NL A +L + NP + QA+ R HRIGQ ++R
Sbjct: 594 ------SIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYR 647
Query: 1221 FIVKDTVEDSIYK 1233
++E + K
Sbjct: 648 LSTAQSIETRVLK 660
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 115/302 (38%), Gaps = 62/302 (20%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFS-NTSLMDISDLASADIVI 189
G L++ P L W +EI R T S+ IY G ++ M + IVI
Sbjct: 251 GPYLVIAPLSTLSNWFNEIARFT--PSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVI 308
Query: 190 TTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAA 249
T+Y+V D R + YP W V +DE ++++
Sbjct: 309 TSYEVAMNDAK-------------RILRHYP----------WKYVVIDEGHRLKNHKCKL 345
Query: 250 TEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTY----RWW-------AEVL 298
L + +TGTP+Q L +L+ LL F+ F ++ W+ E
Sbjct: 346 LRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEAT 405
Query: 299 RDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQ 358
++ EK + H I + + R K V EL LP ++E + + T++ ++ F +
Sbjct: 406 KEEEEKRRAQVVSKLHGILRPFILRRMKCDV--ELSLPRKKEIIMYATMTDHQKKFQE-- 461
Query: 359 HETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
H V +L + + G GKL N +++LR+ C HP
Sbjct: 462 --------HLVNNTLEAHLGENAIRG-------------QGWKGKLNNLVIQLRKNCNHP 500
Query: 419 QV 420
+
Sbjct: 501 DL 502
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1092 VTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGG---RKAQVAINQF 1148
V R+L+ +++++ S++ LD+ F+R+ G K Q +N+
Sbjct: 538 VLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRL 597
Query: 1149 RGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVH 1208
K LL + G GLNL+ A +VL +P NPA + QA +RV
Sbjct: 598 -----------NDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVW 646
Query: 1209 RIGQKNKTLIHRFIVKDTVEDSIYKLNRSR 1238
R GQK + ++RF+ T+E+ +Y+ S+
Sbjct: 647 RDGQKKRVYVYRFLSTGTIEEKVYQRQMSK 676
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 15/130 (11%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNGTKGCEKST 1162
+K+L+FS +LD+LE +F R+ G Q ++ F ++
Sbjct: 545 DKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDF-----------NAS 593
Query: 1163 PKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
P S QV L+ + G GLNL+ A VV+ +P NP+ + QA R R GQK ++ R +
Sbjct: 594 P-SKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLL 652
Query: 1223 VKDTVEDSIY 1232
++E+ +Y
Sbjct: 653 SAGSLEELVY 662
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 46/240 (19%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGV-RDTSFSNTSLMDISDLASADIVI 189
G LI+CP+ I+ W E R K +Y G RD +++ ++++
Sbjct: 199 GPVLIICPSSIIHNWESEFSRWA--SFFKVSVYHGSNRDM------ILEKLKARGVEVLV 250
Query: 190 TTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAA 249
T++D F+ + PV L+ I W V DEA +++ +
Sbjct: 251 TSFDT--------------------FRIQGPV----LSGINWEIVIADEAHRLKNEKSKL 286
Query: 250 TEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKG---- 305
E L + +K +TGT +Q K+ +L+ L ++ T + + +P + G
Sbjct: 287 YEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRAT 346
Query: 306 ------DIGAMEFTH--TIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQR 357
I H ++ ++ M R +K+ L + +E+ + + +S ++ YQR
Sbjct: 347 APERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHL-MMGKEDNVVFCQMSQLQRRVYQR 405
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 1105 KEKVLVFSSWNDVLD-VLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEKSTP 1163
KEKVLVFS + D L +++H ++ + G + + KQ T E + P
Sbjct: 1215 KEKVLVFSQYIDPLKLIMKHL-----VSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDP 1269
Query: 1164 KS-IQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFI 1222
KS +V L + + G++L+ A V+L++ + NPA E QAISR +RIGQK + +
Sbjct: 1270 KSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLV 1329
Query: 1223 VKDTVEDSIY 1232
K T E Y
Sbjct: 1330 AKGTPEGPKY 1339
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 1103 DHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQ---VAINQFRGKQNGTKGCE 1159
D +VL+FS LD+L+ ++ R+ G +A+ AI F K E
Sbjct: 391 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSE 450
Query: 1160 KSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIH 1219
+ V ++ + G GLNL+ A V+ E NP + QA+ R HRIGQ + L
Sbjct: 451 VDGSNAF-VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSI 509
Query: 1220 RFIVKDTVEDSIYK 1233
+ + +VE+ I +
Sbjct: 510 NLVTEHSVEEVILR 523
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 115/308 (37%), Gaps = 74/308 (24%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEG-------VRDTSFSNTSLMDISDLA 183
G L++CP + W EI R T +L+ Y G +R + + +
Sbjct: 102 GPFLVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFL 159
Query: 184 SADIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVE 243
D+++TTYD+ D L++I W +DEAQ ++
Sbjct: 160 PFDVLLTTYDIALVD------------------------QDFLSQIPWQYAIIDEAQRLK 195
Query: 244 S-NATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPY 302
+ N+ + + ITGTPIQ L +L+ L+ F F T + +
Sbjct: 196 NPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFK--- 252
Query: 303 EKGD-IGAMEFTHT---------IFKQIMWRSSKKHVAD--ELDLPSQEECLSWLTLSPV 350
E GD + ++ ++ I M R +K + + L LP E + L +
Sbjct: 253 ETGDGLSGLDVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSL 312
Query: 351 EEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLK 410
++ Y IL +++PG L+ HT L N +++
Sbjct: 313 QKKIY-------------------TSILRKELPGLLELSSGGS---NHT---SLQNIVIQ 347
Query: 411 LRQACCHP 418
LR+AC HP
Sbjct: 348 LRKACSHP 355
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE + R+ G G + +I + G EK
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAY-----NKPGSEKF-- 560
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
V LL + G G+NL A V+L + NP + QA R HRIGQK + + RF
Sbjct: 561 ----VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 616
Query: 1224 KDTVEDSI 1231
+ +E+ +
Sbjct: 617 ESAIEEKV 624
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
T L R W + +DEA +++ + ++ + + ITGTP+Q L +L+ LL FL
Sbjct: 304 TALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F++ + E + E ++ H + + + R K V E LP ++E +
Sbjct: 364 LPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETIL 421
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ +S +++ +Y+ L+ D+ E++N E +
Sbjct: 422 KVGMSQMQKQYYK--------------ALLQKDL--------EAVNAGG-------ERKR 452
Query: 404 LLNALLKLRQACCHP 418
LLN ++LR+ C HP
Sbjct: 453 LLNIAMQLRKCCNHP 467
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE + R+ G G + +I + G EK
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAY-----NKPGSEKF-- 560
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
V LL + G G+NL A V+L + NP + QA R HRIGQK + + RF
Sbjct: 561 ----VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 616
Query: 1224 KDTVEDSI 1231
+ +E+ +
Sbjct: 617 ESAIEEKV 624
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
T L R W + +DEA +++ + ++ + + ITGTP+Q L +L+ LL FL
Sbjct: 304 TALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F++ + E + E ++ H + + + R K V E LP ++E +
Sbjct: 364 LPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETIL 421
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ +S +++ +Y+ L+ D+ E++N E +
Sbjct: 422 KVGMSQMQKQYYK--------------ALLQKDL--------EAVNAGG-------ERKR 452
Query: 404 LLNALLKLRQACCHP 418
LLN ++LR+ C HP
Sbjct: 453 LLNIAMQLRKCCNHP 467
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE + R+ G G + +I + G EK
Sbjct: 508 RVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAY-----NKPGSEKF-- 560
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
V LL + G G+NL A V+L + NP + QA R HRIGQK + + RF
Sbjct: 561 ----VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 616
Query: 1224 KDTVEDSI 1231
+ +E+ +
Sbjct: 617 ESAIEEKV 624
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
T L R W + +DEA +++ + ++ + + ITGTP+Q L +L+ LL FL
Sbjct: 304 TALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 363
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F++ + E + E ++ H + + + R K V E LP ++E +
Sbjct: 364 LPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETIL 421
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ +S +++ +Y+ L+ D+ E++N E +
Sbjct: 422 KVGMSQMQKQYYK--------------ALLQKDL--------EAVNAGG-------ERKR 452
Query: 404 LLNALLKLRQACCHP 418
LLN ++LR+ C HP
Sbjct: 453 LLNIAMQLRKCCNHP 467
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQ 1147
K E + R + +K H+ +L+FS ++D+LE + N+ ++R+ G K
Sbjct: 696 KFELLDRLLPKLKKAGHR--ILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTD----- 748
Query: 1148 FRGKQNGTKGCEKSTPKSIQVLLLL-IQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISR 1206
Q G + + P S + LL + G GLNL A +++ + NP + QA R
Sbjct: 749 ----QRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDR 804
Query: 1207 VHRIGQKNKTLIHRFIVKDTVEDSI 1231
HRIGQK + + + ++E+ I
Sbjct: 805 AHRIGQKKEVRVFVLVSIGSIEEVI 829
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 113/306 (36%), Gaps = 73/306 (23%)
Query: 125 ESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLAS 184
ES G LI+ P +LP W +E S+ +Y+G ++ T +
Sbjct: 430 ESKDLHGPHLILAPKAVLPNWENEFALWA--PSISAFLYDGSKE---KRTEIRARIAGGK 484
Query: 185 ADIVITTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVES 244
+++IT YD++ D L +I W + +DE +++
Sbjct: 485 FNVLITHYDLIMRD------------------------KAFLKKIDWNYMIVDEGHRLKN 520
Query: 245 NATA-ATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYE 303
+ A A + K +TGTPIQ L +L+ LL FL FN+ + E P+
Sbjct: 521 HECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPF- 579
Query: 304 KGDIGAMEFT-----------HTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEE 352
+ G+ T H + + + R K V E LP + + + +S ++
Sbjct: 580 -AECGSASLTDEEELLIINRLHHVIRPFLLRRKKSEV--EKFLPGKTQVILKCDMSAWQK 636
Query: 353 HFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLR 412
+Y++ V D V G S N S L N ++LR
Sbjct: 637 LYYKQ-----VTDVGRV--------------GLHSGNGKSK---------SLQNLTMQLR 668
Query: 413 QACCHP 418
+ C HP
Sbjct: 669 KCCNHP 674
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE + R+ G G + +I + G EK
Sbjct: 513 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAY-----NKPGSEKF-- 565
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
V LL + G G+NL A V+L + NP + QA R HRIGQK + + RF
Sbjct: 566 ----VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 621
Query: 1224 KDTVEDSI 1231
++ +E +
Sbjct: 622 ENAIEAKV 629
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
T L R W + +DEA +++ + ++ + + ITGTP+Q L +L+ LL FL
Sbjct: 309 TTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F++ + E + E ++ H + + + R K V E LP ++E +
Sbjct: 369 LPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETIL 426
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ +S +++ +Y+ L+ D+ E +N E +
Sbjct: 427 KVGMSQMQKQYYK--------------ALLQKDL--------EVVNGGG-------ERKR 457
Query: 404 LLNALLKLRQACCHP 418
LLN ++LR+ C HP
Sbjct: 458 LLNIAMQLRKCCNHP 472
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
+VL+FS +LD+LE + R+ G G + +I + G EK
Sbjct: 513 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAY-----NKPGSEKF-- 565
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
V LL + G G+NL A V+L + NP + QA R HRIGQK + + RF
Sbjct: 566 ----VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT 621
Query: 1224 KDTVEDSI 1231
++ +E +
Sbjct: 622 ENAIEAKV 629
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 224 TLLTRIYWWRVCLDEAQMVESNATAATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFL 283
T L R W + +DEA +++ + ++ + + ITGTP+Q L +L+ LL FL
Sbjct: 309 TTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFL 368
Query: 284 KVSPFNTYRWWAEVLRDPYEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLS 343
F++ + E + E ++ H + + + R K V E LP ++E +
Sbjct: 369 LPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV--EKGLPPKKETIL 426
Query: 344 WLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGK 403
+ +S +++ +Y+ L+ D+ E +N E +
Sbjct: 427 KVGMSQMQKQYYK--------------ALLQKDL--------EVVNGGG-------ERKR 457
Query: 404 LLNALLKLRQACCHP 418
LLN ++LR+ C HP
Sbjct: 458 LLNIAMQLRKCCNHP 472
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 114/296 (38%), Gaps = 59/296 (19%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFS-NTSLMDISDLASADIVI 189
G L++CP + W EI R T +L+ Y G + S+ D D+++
Sbjct: 102 GPFLVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLL 159
Query: 190 TTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVES-NATA 248
TTYD+ D L++I W +DEAQ +++ N+
Sbjct: 160 TTYDIALVD------------------------QDFLSQIPWQYAIIDEAQRLKNPNSVL 195
Query: 249 ATEMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEKGDIG 308
+ + ITGTPIQ L +L+ L+ F F T + ++ + D+
Sbjct: 196 YNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKETGDGLDVS 255
Query: 309 AMEFTHTIFKQI----MWRSSKKHVAD--ELDLPSQEECLSWLTLSPVEEHFYQRQHETC 362
+ T+ K I M R +K + + L LP E + L +++ Y
Sbjct: 256 NDKETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIY------- 308
Query: 363 VRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQACCHP 418
IL +++PG L+ HT L N +++LR+AC HP
Sbjct: 309 ------------TSILRKELPGLLELSSGGS---NHT---SLQNIVIQLRKACSHP 346
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 1103 DHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQ---VAINQFRGKQNGTKGCE 1159
D +VL+FS LD+L+ ++ R+ G +A+ AI F +G+
Sbjct: 382 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNF--SVDGSNAF- 438
Query: 1160 KSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIH 1219
V ++ + G GLNL+ A V+ E NP + QA+ R HRIGQ + L
Sbjct: 439 --------VFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSI 490
Query: 1220 RFIVKDTVEDSIYK 1233
+ + +VE+ I +
Sbjct: 491 NLVTEHSVEEVILR 504
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 1106 EKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAQVAINQFRGKQNGTKGCEKSTPKS 1165
+KVL+FS + + + V+E I F +M ++ + QN C
Sbjct: 1194 DKVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDAD-C------- 1245
Query: 1166 IQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKD 1225
+ LL+ GA GL+L HV L+EP+ + + E Q ISR HR+G K + ++
Sbjct: 1246 --MALLMDGSGALGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRG 1303
Query: 1226 TVEDSIYK-LNRSRSNHSFISGN 1247
T+E+ + + L + + +SG+
Sbjct: 1304 TIEEQMMRFLEDAEKSDRLLSGD 1326
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 130/305 (42%), Gaps = 73/305 (23%)
Query: 130 SGATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVI 189
S ATLIV P ++ W +I +H L+ ++ + L S D+VI
Sbjct: 753 SKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWA-------DHIELSPHSLAWDYDVVI 805
Query: 190 TTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNA--T 247
TT+ L + + +K+ P+I +++W RV LDE + S+ T
Sbjct: 806 TTFSRLSAEWNP--------------RKKSPLI-----QVHWLRVMLDEGHTLGSSVSLT 846
Query: 248 AATEMALRLHSKHHWCITGTPI----QRKLDDLYGLLRFL--KVSPFNTYRWWAEVLRDP 301
+MA+ L + + W +TGTP +L + LL+FL +V N W A +LR P
Sbjct: 847 NKFQMAVSLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGENPKFWEAGILR-P 905
Query: 302 YEKGDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLT-LSPVEEHFYQRQHE 360
+E + ++ M S KK DL C+ +T L+ + H
Sbjct: 906 FEAEMEEGRLRLLQLLQRCMISSRKK------DLQMIPPCIKKVTYLNFLPGH------- 952
Query: 361 TCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNA---------LLKL 411
R +E++E++R +IL L D +DP +H E+ LLN+ + +
Sbjct: 953 --ARSYNELVETVRRNIL---------LADWNDP--SHVES--LLNSKQWKFRSITISNV 997
Query: 412 RQACC 416
R +CC
Sbjct: 998 RLSCC 1002
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 1096 ILSIKATDHKEKVLVFSSWNDVLDVLE------------HAFAANNITFVRMKGGRKA-- 1141
ILS+ A D +K LVFS LD++E F + R+ G ++
Sbjct: 1123 ILSMSA-DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 1142 -QVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAE 1200
Q +++F N K ++ L+ + G+ G+NL A V++V+ NP +
Sbjct: 1182 RQKLVDRFNEPDN----------KRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231
Query: 1201 AQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYK 1233
QAI R R GQK +R + + T+E+ IYK
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYK 1264
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 1096 ILSIKATDHKEKVLVFSSWNDVLDVLE------------HAFAANNITFVRMKGGRKA-- 1141
ILS+ A D +K LVFS LD++E F + R+ G ++
Sbjct: 1123 ILSMSA-DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 1142 -QVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAE 1200
Q +++F N K ++ L+ + G+ G+NL A V++V+ NP +
Sbjct: 1182 RQKLVDRFNEPDN----------KRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231
Query: 1201 AQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYK 1233
QAI R R GQK +R + + T+E+ IYK
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYK 1264
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 1096 ILSIKATDHKEKVLVFSSWNDVLDVLE------------HAFAANNITFVRMKGGRKA-- 1141
ILS+ A D +K LVFS LD++E F + R+ G ++
Sbjct: 1123 ILSMSA-DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1181
Query: 1142 -QVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAE 1200
Q +++F N K ++ L+ + G+ G+NL A V++V+ NP +
Sbjct: 1182 RQKLVDRFNEPDN----------KRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1231
Query: 1201 AQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYK 1233
QAI R R GQK +R + + T+E+ IYK
Sbjct: 1232 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYK 1264
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 1096 ILSIKATDHKEKVLVFSSWNDVLDVLE------------HAFAANNITFVRMKGGRKA-- 1141
ILS+ A D +K LVFS LD++E F + R+ G ++
Sbjct: 1102 ILSMSA-DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSE 1160
Query: 1142 -QVAINQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAE 1200
Q +++F N K ++ L+ + G+ G+NL A V++V+ NP +
Sbjct: 1161 RQKLVDRFNEPDN----------KRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYD 1210
Query: 1201 AQAISRVHRIGQKNKTLIHRFIVKDTVEDSIYK 1233
QAI R R GQK +R + + T+E+ IYK
Sbjct: 1211 LQAIFRAWRYGQKKPVFAYRLMARGTIEEKIYK 1243
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 16/134 (11%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKG---GRKAQVAINQFRGKQNGTKGCEKSTP 1163
K++VF+ + VLD ++ I FVR+ G R Q+A+ F+
Sbjct: 556 KMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSS----------- 604
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
+++ ++ ++ G GL+ AQ+VV +E P+ QA R HR GQ + ++ F
Sbjct: 605 -EVKIAIIGVEAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCA 663
Query: 1224 KDTVEDSIYK-LNR 1236
KDT+++S ++ LN+
Sbjct: 664 KDTMDESNWQNLNK 677
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGG---RKAQVA 1144
K+ + R ++ ++ T H+ VL+FS+ +LD+LE + + R+ G + A
Sbjct: 1309 KLWILDRILIKLQRTGHR--VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESA 1366
Query: 1145 INQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAI 1204
I F + C + LL I+ GLNL A VV+ +P NP E QA+
Sbjct: 1367 IVDF---NDPDTDCF--------IFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAV 1415
Query: 1205 SRVHRIGQ 1212
+R HRIGQ
Sbjct: 1416 ARAHRIGQ 1423
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 1088 KIEAVTRRILSIKATDHKEKVLVFSSWNDVLDVLEHAFAANNITFVRMKGG---RKAQVA 1144
K+ + R ++ ++ T H+ VL+FS+ +LD+LE + + R+ G + A
Sbjct: 1308 KLWILDRILIKLQRTGHR--VLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESA 1365
Query: 1145 INQFRGKQNGTKGCEKSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAI 1204
I F + C + LL I+ GLNL A VV+ +P NP E QA+
Sbjct: 1366 IVDF---NDPDTDCF--------IFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAV 1414
Query: 1205 SRVHRIGQ 1212
+R HRIGQ
Sbjct: 1415 ARAHRIGQ 1422
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 61/303 (20%)
Query: 131 GATLIVCPAPILPQWHDEIIRHTRPGSLKTCIYEGVRDTSFSNTSLMDISDLASADIVIT 190
G LI+ P +L W E+ HT S+ Y G +D + L ++++T
Sbjct: 1031 GPHLIIVPNAVLVNWKSEL--HTWLPSVSCIYYVGTKD---QRSKLFSQVKFEKFNVLVT 1085
Query: 191 TYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNATAAT 250
TY+ + D S L+++ W + +DEAQ ++ +
Sbjct: 1086 TYEFIMYDRSK------------------------LSKVDWKYIIIDEAQRMKDRESVLA 1121
Query: 251 EMALRLHSKHHWCITGTPIQRKLDDLYGLLRFLKVSPFNTYRWWAEVLRDPYEK------ 304
R + +TGTP+Q L +L+ LL L F+ + + + P++K
Sbjct: 1122 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHN 1181
Query: 305 ---------GDIGAMEFTHTIFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFY 355
+ + H I + M R + V E LP++ + +S ++ Y
Sbjct: 1182 IEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDV--EGSLPAKVSVVLRCRMSAIQSAVY 1239
Query: 356 QRQHETCVRDAHEVIESLRNDILNRKVPGSESLNDSSDPLITHTEAGKLLNALLKLRQAC 415
D + +LR D P E L +P+ L N ++LR+AC
Sbjct: 1240 ---------DWIKATGTLRVD------PDDEKLRAQKNPIYQAKIYRTLNNRCMELRKAC 1284
Query: 416 CHP 418
HP
Sbjct: 1285 NHP 1287
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18 |
chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 1107 KVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKA---QVAINQFRGKQNGTKGCEKSTP 1163
K LVF+ +L+ L + +R+ G A Q ++ F+ K
Sbjct: 486 KFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDE---------- 535
Query: 1164 KSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIV 1223
I+ +L I+ G+ L A V+ E P QA R HRIGQ + IH +
Sbjct: 536 --IKAAVLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLA 593
Query: 1224 KDTVEDSIYKLNRSR 1238
DTV+D I+ + +S+
Sbjct: 594 NDTVDDIIWDVVQSK 608