Miyakogusa Predicted Gene

Lj2g3v2124620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124620.1 Non Chatacterized Hit- tr|E1Z740|E1Z740_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,42.4,5e-18,UMP1,Proteasome maturation factor UMP1; PROTEASOME
MATURATION PROTEIN (UMP1),NULL; PROTEASOME MATURA,CUFF.38607.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to  ...   221   1e-58
AT5G38650.1 | Symbols:  | Proteasome maturation factor UMP1 | ch...   221   1e-58
AT1G67250.1 | Symbols:  | Proteasome maturation factor UMP1 | ch...   220   3e-58
AT1G62920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome...    61   3e-10

>AT5G38660.2 | Symbols: APE1 | acclimation of photosynthesis to
           environment | chr5:15471208-15475497 REVERSE LENGTH=431
          Length = 431

 Score =  221 bits (563), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 120/140 (85%)

Query: 3   EAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGA 62
           E+ K IAH+IGG++NDALRFGL GVKSDI+ SHPL++A ES  +  E MKR+ + + YGA
Sbjct: 292 ESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYGA 351

Query: 63  AFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDM 122
           A PLKMDLDRQILSRFQRP G IPSSMLGLE +TG+LD+FGFEDYL+DPRESET++P+D 
Sbjct: 352 ALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVDF 411

Query: 123 HHGMEVRLGLSKGPVCPSFM 142
           HHGMEVRLGLSKGP  PSFM
Sbjct: 412 HHGMEVRLGLSKGPASPSFM 431


>AT5G38650.1 | Symbols:  | Proteasome maturation factor UMP1 |
           chr5:15471208-15472699 REVERSE LENGTH=141
          Length = 141

 Score =  221 bits (563), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 120/140 (85%)

Query: 3   EAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGA 62
           E+ K IAH+IGG++NDALRFGL GVKSDI+ SHPL++A ES  +  E MKR+ + + YGA
Sbjct: 2   ESQKKIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYGA 61

Query: 63  AFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDM 122
           A PLKMDLDRQILSRFQRP G IPSSMLGLE +TG+LD+FGFEDYL+DPRESET++P+D 
Sbjct: 62  ALPLKMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESETLKPVDF 121

Query: 123 HHGMEVRLGLSKGPVCPSFM 142
           HHGMEVRLGLSKGP  PSFM
Sbjct: 122 HHGMEVRLGLSKGPASPSFM 141


>AT1G67250.1 | Symbols:  | Proteasome maturation factor UMP1 |
           chr1:25163808-25164967 REVERSE LENGTH=141
          Length = 141

 Score =  220 bits (560), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 119/140 (85%)

Query: 3   EAAKSIAHQIGGIQNDALRFGLQGVKSDIVGSHPLQSAQESASKINEVMKRQCMVNLYGA 62
           E+ K IAH+IGG++NDALRFGL GVKS+I+GSHPL+S+ ES  K  E +KR  + + YG 
Sbjct: 2   ESEKKIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYGT 61

Query: 63  AFPLKMDLDRQILSRFQRPSGAIPSSMLGLEAFTGSLDDFGFEDYLSDPRESETIRPLDM 122
           A PLKMD+DRQILSRFQRP G IPSSMLGLE +TG++DDFGFEDYL+DPR+SET +P+D 
Sbjct: 62  ALPLKMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLNDPRDSETFKPVDF 121

Query: 123 HHGMEVRLGLSKGPVCPSFM 142
           HHGMEVRLG+SKGP+ PSFM
Sbjct: 122 HHGMEVRLGISKGPIYPSFM 141


>AT1G62920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome
           maturation factor UMP1 (InterPro:IPR008012); BEST
           Arabidopsis thaliana protein match is: Proteasome
           maturation factor UMP1 (TAIR:AT1G67250.1); Has 70 Blast
           hits to 70 proteins in 15 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr1:23304313-23306374 FORWARD LENGTH=260
          Length = 260

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 38/71 (53%), Gaps = 24/71 (33%)

Query: 63  AFPLKMDLDRQILSRF------------------------QRPSGAIPSSMLGLEAFTGS 98
           A PLKMDLDR IL R+                         RP+G IPS ML LE +TG+
Sbjct: 4   ALPLKMDLDRPILPRYGMLDQYHYEIIPLNSDAYSAIRYENRPTGPIPSLMLDLEVYTGA 63

Query: 99  LDDFGFEDYLS 109
           +DDF FEDYL+
Sbjct: 64  IDDFDFEDYLN 74