Miyakogusa Predicted Gene

Lj2g3v2124470.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124470.1 Non Chatacterized Hit- tr|D8U4I2|D8U4I2_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.44,0.000002,seg,NULL,CUFF.38591.1
         (244 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   172   2e-43

>AT5G41960.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 1807 Blast hits to 1807 proteins in
           277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:16789760-16790868
           FORWARD LENGTH=217
          Length = 217

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/153 (57%), Positives = 98/153 (64%), Gaps = 4/153 (2%)

Query: 45  CQAVFSDDAPFAAAIGACMXXXXX---XXXXXXXXXXXXXDAITPTDARFAVMGIISFIP 101
           C+A FS DAP   AIGAC+                      AI  TD R A MGIISFIP
Sbjct: 56  CRAEFSQDAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIP 115

Query: 102 YFNWLSWVFAWLDTRKPRYAVFALVYLAPYLRTNLSISPEESWLPIASILFCIVHIQLEA 161
           YFNWLSWVFAWLDT K RYAV+ALVYL PYL +NLSISPEESWLPI SI+  I+H+QLEA
Sbjct: 116 YFNWLSWVFAWLDTGKSRYAVYALVYLVPYLSSNLSISPEESWLPITSIVLGIIHVQLEA 175

Query: 162 SIRNGDIQGFRLFRNIGDQPSSSAGKSGHLNQH 194
           SI NGD++    FRN  D   SS  K  H  +H
Sbjct: 176 SIANGDVETLAFFRNTSDDDFSS-KKRIHFKKH 207