Miyakogusa Predicted Gene

Lj2g3v2124240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124240.1 Non Chatacterized Hit- tr|J3MPR3|J3MPR3_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB08G1,36.93,0.00001,seg,NULL,CUFF.38597.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10070.1 | Symbols:  | KH domain-containing protein | chr4:62...    83   3e-16
AT1G33680.1 | Symbols:  | KH domain-containing protein | chr1:12...    54   1e-07

>AT4G10070.1 | Symbols:  | KH domain-containing protein |
           chr4:6295608-6299759 REVERSE LENGTH=725
          Length = 725

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/233 (42%), Positives = 121/233 (51%), Gaps = 29/233 (12%)

Query: 1   MAPRSSYGSGWEQRPHHSLQGPPSHXXXXXXXXXXXXHLSDAPPSTQLPSSVPPHGTGPS 60
           M PR  YG+ W+QRP +S  GP ++              S  P          P   GP 
Sbjct: 410 MPPRGGYGTDWDQRPPYS--GPYNYYGRQGAQ-------SAGPVPPPSGPVPSPAFGGPP 460

Query: 61  PAQVNYNYGQPQGQEYGHQAPYAQAGHPPQGYAQGYGESKYENHPPTQHPYGGHINPQPS 120
            +QV+Y YGQ  G EYGH APY+Q G+  Q Y Q Y + KY+++PP Q PYGG      S
Sbjct: 461 LSQVSYGYGQSHGPEYGHAAPYSQTGY-QQTYGQTYEQPKYDSNPPMQPPYGG------S 513

Query: 121 YPQAGPNYAAPQQYGKPPV--YGQPSHGQAPQSYGHPR---ATQPGDIPYQGSTPAQ-SY 174
           YP AG   +   Q  +P V  YG    G   Q YG P+   A   GD+PYQG+TPA  SY
Sbjct: 514 YPPAGGGQSGYYQMQQPGVRPYGM-QQGPVQQGYGPPQPAAAASSGDVPYQGATPAAPSY 572

Query: 175 G-TSM-PMQQPYPYASSA--PTQAAYPTYGSAPAADGYNHPPA--ASGPVYAQ 221
           G T+M P QQ Y Y SS     Q  YP+Y SAP +D YN+     A+GP Y Q
Sbjct: 573 GSTNMAPQQQQYGYTSSDGPVQQQTYPSYSSAPPSDAYNNGTQTPATGPAYQQ 625


>AT1G33680.1 | Symbols:  | KH domain-containing protein |
           chr1:12204056-12208282 FORWARD LENGTH=763
          Length = 763

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 95/254 (37%), Positives = 108/254 (42%), Gaps = 79/254 (31%)

Query: 1   MAPRSSYGSGWEQRPHHSLQGPPSHXXXXXXXXXXXXHLSDAPPSTQLPSSVPPHGTGPS 60
           M PRS YGSGWEQRP HS  GP  +                     Q P  VP HG    
Sbjct: 459 MPPRSGYGSGWEQRPPHS--GPYDYYGRQGG---------------QNPGPVPSHG---- 497

Query: 61  PAQVNYNYGQPQGQEYGHQAPYAQAGHPPQGYAQGYGESKYENHPPTQHPYGGHINPQPS 120
                              A Y+QAG   Q Y Q Y +  Y+N PP    YGG+   Q  
Sbjct: 498 -------------------ASYSQAG-AQQTYGQMYDQPHYDN-PPMHQSYGGYGGSQQG 536

Query: 121 YPQAGPNYAAPQQYGKPPVYGQPSHGQAPQSY-GHPRATQPGDIPYQGSTPAQ------- 172
           YP AG  +   QQ  +P  YG    G A Q Y     A  PGD+PYQG TPA        
Sbjct: 537 YPSAGGQHQM-QQPSRP--YGM--QGSAEQGYGPPRPAAPPGDVPYQGPTPAAPSYGSTP 591

Query: 173 ---------------------SYGTSMPMQQPYPYASSAPTQAAYPTYGSAPAADGYN-- 209
                                SYG++M  QQ Y YASSAPTQ  YP+Y SA  +DGYN  
Sbjct: 592 AAASYGSTPAAPSYGSTPAAPSYGSNMAQQQQYGYASSAPTQQTYPSYSSAAPSDGYNGT 651

Query: 210 HPPAASGPVYAQPG 223
            PPA + P Y Q G
Sbjct: 652 QPPAVA-PAYEQHG 664