Miyakogusa Predicted Gene

Lj2g3v2124190.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2124190.1 Non Chatacterized Hit- tr|C6SX87|C6SX87_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.54882
PE,94,4e-19,Cytochrome c,Cytochrome c domain; CYTCHRMECIAB,Cytochrome
c, class IA/ IB; SUBFAMILY NOT NAMED,NULL;,CUFF.38579.1
         (50 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-62...   101   1e-22
AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:...    95   1e-20

>AT4G10040.1 | Symbols: CYTC-2 | cytochrome c-2 |
           chr4:6277083-6278281 FORWARD LENGTH=112
          Length = 112

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 1   MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 49
           MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE TA
Sbjct: 64  MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112


>AT1G22840.1 | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 |
           chr1:8079384-8080286 FORWARD LENGTH=114
          Length = 114

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 46/48 (95%)

Query: 2   AVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 49
           AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct: 65  AVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112