Miyakogusa Predicted Gene
- Lj2g3v2089800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2089800.1 tr|G7K989|G7K989_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_5g00,66.57,0,RRM,RNA recognition motif domain; ZF_C3H1,Zinc
finger, CCCH-type; no description,Nucleotide-binding,,CUFF.38563.1
(657 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 366 e-101
AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein wi... 354 1e-97
AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein wi... 354 1e-97
AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 354 1e-97
AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein... 245 9e-65
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein... 245 9e-65
AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 241 9e-64
AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 231 2e-60
AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 223 4e-58
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 177 2e-44
AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 177 3e-44
AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 177 3e-44
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 146 5e-35
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein... 115 7e-26
AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 8e-16
AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 6e-12
>AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399162-7401870 FORWARD LENGTH=602
Length = 602
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 255/640 (39%), Positives = 358/640 (55%), Gaps = 104/640 (16%)
Query: 7 TNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTHLGLTLT 65
T+++ ++I+ +EP+ ASKI+GYLL+ +L ++L+RLA P+ +L ++ + K+ LGL+
Sbjct: 7 TSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSALGLSSN 66
Query: 66 -------PSSPSTAARPI-----STTNNNPFNPFSK--VSPRIPTPTNGFDFSRNPFSLS 111
P +P +RPI S ++++P N FS+ +SP TP + NP +S
Sbjct: 67 GSSSASSPLNP--ISRPINIHRHSLSHSSPGNGFSRNPLSPSFATPGS---LGSNPNMIS 121
Query: 112 GLPKNHPISP--TSSSLLSYENIRAASSFQPRVNNGDVDLVDEQQVNEFFPFLNEPS--N 167
SP SSSL + + A S G+ D +DEQQ+ + FLNE S N
Sbjct: 122 --------SPFQASSSLFASDGAAAGDS------TGNGDFLDEQQLGNYLSFLNESSSKN 167
Query: 168 NDDAFDPHLEPGIGGPNWHSVNNGDAHFHRRSFSASDAXXXXXXXXXXXXXXXXXKPCLY 227
ND++ DP S +NGDAH H+RSFSASDA C
Sbjct: 168 NDESLDPF---------GFSADNGDAHLHKRSFSASDA-------------------CFG 199
Query: 228 FAR-GFCKNGSNCKFVHVALPDTPDASAIVGSPGELMRR-EELLRFKVAQHQRLLAASQL 285
GF G N +F+H L D D+ GSP + R+ EE++R K+AQ QR+ AA L
Sbjct: 200 SEEPGFGGGGYN-RFLHGGLGDDFDSPGGFGSPDYVSRQQEEIVRMKMAQRQRMAAAQYL 258
Query: 286 VAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMGEKFCNF-SRGRMERNDFLAMFSGE 344
A SP S++K ++FL+ Q+N A + A GE+ F S GR ER++F+ M G+
Sbjct: 259 AATGSPMSYEKGLNFLLHQRN-----AHRSGAGQFGEEGYWFGSPGRHERDEFMGM--GD 311
Query: 345 KTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRL 404
K+NSAS+QIYLTFPA+S+F DEDVS YF FGPVQDVRIPYQQKRMFGFVTF++ ETVR+
Sbjct: 312 KSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRI 371
Query: 405 ILSKGNPHFICDSRVLVKPYKEKGKVPDKR-XXXXXXXLERGDFFP-LSPSAFDSKEPYD 462
IL++GNPHFICDSRVLVKPYKEKG++ +KR +ERG+F P SPS DS++ +D
Sbjct: 372 ILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLFD 431
Query: 463 FHLGQRVLYNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNP-IHHQRSFSVG 521
HL R+ N +++ R+ RR SLQL D+ + +HHQRS S+G
Sbjct: 432 SHLAPRMFSNTQEMM--RRKAEQADLQQAIEFQRRRFLSLQLPDMDSESFLHHQRSLSIG 489
Query: 522 APFAFPHPLSSHVI--SAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVDPACIDD 579
+P F ++ ++ S S ++ + G SG Q E A + D
Sbjct: 490 SPVHFSPRVNQSMLFRSESTSDEVFEGNGDSG----------------HQSEATRAFLSD 533
Query: 580 TEGENI--KDSLNAEVTDLSK-SVEQDLPDSLFASPTKAA 616
T G NI + N+ + + S+E LPDS FASP+K
Sbjct: 534 T-GHNISQERGYNSHLNKGQETSLENTLPDSFFASPSKTG 572
>AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 262/688 (38%), Positives = 380/688 (55%), Gaps = 90/688 (13%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M S +AT+++L++I+++EP+ A KI+GYLL+ + D +L+ LA P+ +L + I +VK+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 60 LGLTLTPSSPSTAARPISTTNNNPFNPFSK--VSPRIPTPTNGF-DFSRNPFSLSGL--- 113
LG+ S + + T+ +P NP + ++ R + +NGF DF RN S
Sbjct: 61 LGIF------SNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSP 114
Query: 114 ------------------PKNHPISPTSSSLLSYENIRAASSFQPRVNNGDVDLVDEQQV 155
PK+ PIS SS S N +A+ G DL+D+QQ+
Sbjct: 115 WSFNNCINGNNGNNPHISPKHTPISKPFSSHQS--NGLSATHSGSADAAGGADLLDDQQL 172
Query: 156 NEFFPFLNEP-SNNDDAFDPHLEPGIGGPNWHSVN-NGDAHFHRRSFSASDAXXXXXXXX 213
N+ FL++ S +D DP + P +SV+ +G+ H HRRSFS DA
Sbjct: 173 NDCLSFLDDSCSKTEDLVDPSI------PLDYSVDGDGETHLHRRSFSC-DASFVSGDDG 225
Query: 214 XXXXXXXXXKPCLYFARGFCKNGSNCKFVHVALPDTPDASAIVG-SPGEL----MRREEL 268
KPC+YF+RG CKNG +CKF+H PD D + IV SP ++ + EE+
Sbjct: 226 FGGGC----KPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEM 281
Query: 269 LRFKVA-QHQRLLAASQLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMG-EKFCN 326
+R K+A Q QRL ASQ++ ++K +DFL+QQ A G E+F +
Sbjct: 282 MRLKLAYQQQRL--ASQILGRAPQLPYEKRMDFLLQQH------AQRDGGLPFGDERFWS 333
Query: 327 FSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQ 386
S GR+ER + LAM G+++NSASRQIYLTFPA+STFKDEDV+ YFS FG VQDVRIPYQ
Sbjct: 334 SSPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQ 392
Query: 387 QKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR-XXXXXXXLERG 445
QKRMFGFV+F +PETV+++L++GNPHFICDSRVLVKPYKEKGKV DK+ +ERG
Sbjct: 393 QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERG 452
Query: 446 DFFPL-SPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQL 504
++ P SPS D +E DFHLG ++LY +++ R+ RR +LQL
Sbjct: 453 NYSPCSSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQL 510
Query: 505 SDLKNN-PIHHQRSFSVGAPFAFPHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLETAS 563
+ KN+ ++H RSFSVG+P F SAG S + L ++L+
Sbjct: 511 PEFKNSVTLNHHRSFSVGSPGYFS--------SAGNQS-----PDFQSELNGADALKVTD 557
Query: 564 E--QQQPQKEVDPACIDDTEGENIKDSLNAEVT---DLSKSVEQDLPDSLFASPTKAAGD 618
+ + P V+P ++++ K+ N D ++E LP +LF S + + D
Sbjct: 558 DTLELHPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPSAS-STDD 616
Query: 619 YMSDFSTLTEVKESAEFSTSSSTRNNLE 646
+ +D S T +A+ SS+ N+ E
Sbjct: 617 HKTDDSAET----NAKVGVSSTNENDHE 640
>AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 262/688 (38%), Positives = 380/688 (55%), Gaps = 90/688 (13%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M S +AT+++L++I+++EP+ A KI+GYLL+ + D +L+ LA P+ +L + I +VK+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 60 LGLTLTPSSPSTAARPISTTNNNPFNPFSK--VSPRIPTPTNGF-DFSRNPFSLSGL--- 113
LG+ S + + T+ +P NP + ++ R + +NGF DF RN S
Sbjct: 61 LGIF------SNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSP 114
Query: 114 ------------------PKNHPISPTSSSLLSYENIRAASSFQPRVNNGDVDLVDEQQV 155
PK+ PIS SS S N +A+ G DL+D+QQ+
Sbjct: 115 WSFNNCINGNNGNNPHISPKHTPISKPFSSHQS--NGLSATHSGSADAAGGADLLDDQQL 172
Query: 156 NEFFPFLNEP-SNNDDAFDPHLEPGIGGPNWHSVN-NGDAHFHRRSFSASDAXXXXXXXX 213
N+ FL++ S +D DP + P +SV+ +G+ H HRRSFS DA
Sbjct: 173 NDCLSFLDDSCSKTEDLVDPSI------PLDYSVDGDGETHLHRRSFSC-DASFVSGDDG 225
Query: 214 XXXXXXXXXKPCLYFARGFCKNGSNCKFVHVALPDTPDASAIVG-SPGEL----MRREEL 268
KPC+YF+RG CKNG +CKF+H PD D + IV SP ++ + EE+
Sbjct: 226 FGGGC----KPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEM 281
Query: 269 LRFKVA-QHQRLLAASQLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMG-EKFCN 326
+R K+A Q QRL ASQ++ ++K +DFL+QQ A G E+F +
Sbjct: 282 MRLKLAYQQQRL--ASQILGRAPQLPYEKRMDFLLQQH------AQRDGGLPFGDERFWS 333
Query: 327 FSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQ 386
S GR+ER + LAM G+++NSASRQIYLTFPA+STFKDEDV+ YFS FG VQDVRIPYQ
Sbjct: 334 SSPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQ 392
Query: 387 QKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR-XXXXXXXLERG 445
QKRMFGFV+F +PETV+++L++GNPHFICDSRVLVKPYKEKGKV DK+ +ERG
Sbjct: 393 QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERG 452
Query: 446 DFFPL-SPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQL 504
++ P SPS D +E DFHLG ++LY +++ R+ RR +LQL
Sbjct: 453 NYSPCSSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQL 510
Query: 505 SDLKNN-PIHHQRSFSVGAPFAFPHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLETAS 563
+ KN+ ++H RSFSVG+P F SAG S + L ++L+
Sbjct: 511 PEFKNSVTLNHHRSFSVGSPGYFS--------SAGNQS-----PDFQSELNGADALKVTD 557
Query: 564 E--QQQPQKEVDPACIDDTEGENIKDSLNAEVT---DLSKSVEQDLPDSLFASPTKAAGD 618
+ + P V+P ++++ K+ N D ++E LP +LF S + + D
Sbjct: 558 DTLELHPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPSAS-STDD 616
Query: 619 YMSDFSTLTEVKESAEFSTSSSTRNNLE 646
+ +D S T +A+ SS+ N+ E
Sbjct: 617 HKTDDSAET----NAKVGVSSTNENDHE 640
>AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 262/688 (38%), Positives = 380/688 (55%), Gaps = 90/688 (13%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M S +AT+++L++I+++EP+ A KI+GYLL+ + D +L+ LA P+ +L + I +VK+
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 60 LGLTLTPSSPSTAARPISTTNNNPFNPFSK--VSPRIPTPTNGF-DFSRNPFSLSGL--- 113
LG+ S + + T+ +P NP + ++ R + +NGF DF RN S
Sbjct: 61 LGIF------SNNSPSSTPTSPSPLNPICRPPLNGRGSSHSNGFMDFRRNSPSSPSSTSP 114
Query: 114 ------------------PKNHPISPTSSSLLSYENIRAASSFQPRVNNGDVDLVDEQQV 155
PK+ PIS SS S N +A+ G DL+D+QQ+
Sbjct: 115 WSFNNCINGNNGNNPHISPKHTPISKPFSSHQS--NGLSATHSGSADAAGGADLLDDQQL 172
Query: 156 NEFFPFLNEP-SNNDDAFDPHLEPGIGGPNWHSVN-NGDAHFHRRSFSASDAXXXXXXXX 213
N+ FL++ S +D DP + P +SV+ +G+ H HRRSFS DA
Sbjct: 173 NDCLSFLDDSCSKTEDLVDPSI------PLDYSVDGDGETHLHRRSFSC-DASFVSGDDG 225
Query: 214 XXXXXXXXXKPCLYFARGFCKNGSNCKFVHVALPDTPDASAIVG-SPGEL----MRREEL 268
KPC+YF+RG CKNG +CKF+H PD D + IV SP ++ + EE+
Sbjct: 226 FGGGC----KPCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADSPRKMENFVRQHEEM 281
Query: 269 LRFKVA-QHQRLLAASQLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMG-EKFCN 326
+R K+A Q QRL ASQ++ ++K +DFL+QQ A G E+F +
Sbjct: 282 MRLKLAYQQQRL--ASQILGRAPQLPYEKRMDFLLQQH------AQRDGGLPFGDERFWS 333
Query: 327 FSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQ 386
S GR+ER + LAM G+++NSASRQIYLTFPA+STFKDEDV+ YFS FG VQDVRIPYQ
Sbjct: 334 SSPGRLERME-LAMHLGDQSNSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQ 392
Query: 387 QKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR-XXXXXXXLERG 445
QKRMFGFV+F +PETV+++L++GNPHFICDSRVLVKPYKEKGKV DK+ +ERG
Sbjct: 393 QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIERG 452
Query: 446 DFFPL-SPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQL 504
++ P SPS D +E DFHLG ++LY +++ R+ RR +LQL
Sbjct: 453 NYSPCSSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELERRRFINLQL 510
Query: 505 SDLKNN-PIHHQRSFSVGAPFAFPHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLETAS 563
+ KN+ ++H RSFSVG+P F SAG S + L ++L+
Sbjct: 511 PEFKNSVTLNHHRSFSVGSPGYFS--------SAGNQS-----PDFQSELNGADALKVTD 557
Query: 564 E--QQQPQKEVDPACIDDTEGENIKDSLNAEVT---DLSKSVEQDLPDSLFASPTKAAGD 618
+ + P V+P ++++ K+ N D ++E LP +LF S + + D
Sbjct: 558 DTLELHPYPVVNPMSVNNSYSNGAKEETNKSELLDPDSGSTIELVLPSNLFPSAS-STDD 616
Query: 619 YMSDFSTLTEVKESAEFSTSSSTRNNLE 646
+ +D S T +A+ SS+ N+ E
Sbjct: 617 HKTDDSAET----NAKVGVSSTNENDHE 640
>AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 245 bits (625), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 210/393 (53%), Gaps = 73/393 (18%)
Query: 224 PCLYFARGFCKNGSNCKFVHVALPDTPDASAIVGSPGELMRREELLRFKVAQHQRLLAAS 283
PC YFARGFCKNG++C+FVH + + +VGSP R ELLR + LA
Sbjct: 153 PCSYFARGFCKNGASCRFVH-----SDGGADLVGSPS----RIELLRSNSVPPR--LAHH 201
Query: 284 QLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMGEKFCNFSRGRMERNDFLAMFSG 343
+ + PS K ++ QQND QR AA+A +G++ R R ER D AM
Sbjct: 202 FMTRSSLPSFSTKGVNL---QQNDVQR---AAAALMIGDELQKLGRWRPERIDLSAM--- 252
Query: 344 EKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVR 403
ASRQIYLTFPA+S F++EDVS YFS FGPVQDVRIPYQQKRMFGFVTFVYPETV+
Sbjct: 253 --ACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVK 310
Query: 404 LILSKGNPHFICDSRVLVKPYKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDF 463
IL+KGNPHF+CDSRVLVKPYKEKGKVPDK E LSP+ DS P D
Sbjct: 311 SILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERE------LSPTGLDS-SPRDV 363
Query: 464 HLGQRVLY-NPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNPIHHQRSFSVGA 522
LG R Y N D+L R K+ RR+ +LQL D+K + F + +
Sbjct: 364 -LGGRGFYNNTQDVLWRSKF-----EEEILELQSRRLMNLQLLDVK-------KHFQLNS 410
Query: 523 PFAF--PHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVDPACIDDT 580
P P+P S +IS S I Y GG S + S+ DDT
Sbjct: 411 PTNIHSPNPFSQSLISPRPLSVIK--REYDGGEKGKGSSKEGSD-------------DDT 455
Query: 581 EGENIKDSLNAEVTDLSKSVEQDLPDSLFASPT 613
+L + +E LPDS FASP
Sbjct: 456 -------------MNLPERLEDSLPDSPFASPA 475
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M +EAT +VLSRI++++PENASKIMG LL+ + + E++RLA P+ ++H++I + K
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 60 LGLTLTPSSPSTAARPISTTNNNPFNPFSKVSPRIPTPTNGFDFSRN 106
LGL SP + + + NN + + S +P NG SR+
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPAS--LPFYANGGRSSRD 105
>AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 245 bits (625), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 210/393 (53%), Gaps = 73/393 (18%)
Query: 224 PCLYFARGFCKNGSNCKFVHVALPDTPDASAIVGSPGELMRREELLRFKVAQHQRLLAAS 283
PC YFARGFCKNG++C+FVH + + +VGSP R ELLR + LA
Sbjct: 153 PCSYFARGFCKNGASCRFVH-----SDGGADLVGSPS----RIELLRSNSVPPR--LAHH 201
Query: 284 QLVAGTSPSSHDKYIDFLMQQQNDPQRVAAAASAFNMGEKFCNFSRGRMERNDFLAMFSG 343
+ + PS K ++ QQND QR AA+A +G++ R R ER D AM
Sbjct: 202 FMTRSSLPSFSTKGVNL---QQNDVQR---AAAALMIGDELQKLGRWRPERIDLSAM--- 252
Query: 344 EKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVR 403
ASRQIYLTFPA+S F++EDVS YFS FGPVQDVRIPYQQKRMFGFVTFVYPETV+
Sbjct: 253 --ACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVK 310
Query: 404 LILSKGNPHFICDSRVLVKPYKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDF 463
IL+KGNPHF+CDSRVLVKPYKEKGKVPDK E LSP+ DS P D
Sbjct: 311 SILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERE------LSPTGLDS-SPRDV 363
Query: 464 HLGQRVLY-NPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNPIHHQRSFSVGA 522
LG R Y N D+L R K+ RR+ +LQL D+K + F + +
Sbjct: 364 -LGGRGFYNNTQDVLWRSKF-----EEEILELQSRRLMNLQLLDVK-------KHFQLNS 410
Query: 523 PFAF--PHPLSSHVISAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVDPACIDDT 580
P P+P S +IS S I Y GG S + S+ DDT
Sbjct: 411 PTNIHSPNPFSQSLISPRPLSVIK--REYDGGEKGKGSSKEGSD-------------DDT 455
Query: 581 EGENIKDSLNAEVTDLSKSVEQDLPDSLFASPT 613
+L + +E LPDS FASP
Sbjct: 456 -------------MNLPERLEDSLPDSPFASPA 475
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M +EAT +VLSRI++++PENASKIMG LL+ + + E++RLA P+ ++H++I + K
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 60 LGLTLTPSSPSTAARPISTTNNNPFNPFSKVSPRIPTPTNGFDFSRN 106
LGL SP + + + NN + + S +P NG SR+
Sbjct: 61 LGLMNCSRSPWSHQDELISPKNNRGSSLNPAS--LPFYANGGRSSRD 105
>AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19109093 FORWARD LENGTH=513
Length = 513
Score = 241 bits (616), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 217/646 (33%), Positives = 301/646 (46%), Gaps = 163/646 (25%)
Query: 7 TNVVLSRIKNIEPENASKIMGY-LLMNLEDSELLRLACSPDPVLHTIIPRVKTHLGLTLT 65
T+++ S+I+ E ENAS+++ Y LL ++E +L+R+A PD ++ T + K LG
Sbjct: 7 TSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVDLGF--- 63
Query: 66 PSSPSTAARPISTTNNNPFNPFSKVSPRIPTPTNGF-DFSRNPFSLSGLPKNHPISPTSS 124
S + +RPI+ + S SPR NGF +FSRNP +P SS
Sbjct: 64 --SSNGFSRPINIHGQS----LSSSSPR-----NGFLEFSRNP-----------SNPLSS 101
Query: 125 SLLSYENIR------AASSFQPRVNNGDVDLVDEQQVNEF---FPFLNEPSNNDDAFDPH 175
SL + +R +S F+ + DEQQ +F F F +N++D F
Sbjct: 102 SL-TLNTLRDNKPNFNSSPFRESSSLFASSSGDEQQQQQFSNNFLF----TNDEDPF--- 153
Query: 176 LEPGIGGPNWHSVNNGDAHFHRRSFSASDAXXXXXXXXXXXXXXXXXKPCLYFARGFCKN 235
A+ H+RSFSA+DA C +
Sbjct: 154 -----------------ANSHKRSFSANDA-------------------CFESEEPWFGG 177
Query: 236 GSNC-KFVHVALPDTPDASAIVGSPGEL-MRREELLRFKVAQHQRLLAASQLVAGTSPSS 293
G+ C +F L D +S + GSP E+ E ++R K+AQ + ++AA + A SP
Sbjct: 178 GNGCHQFPQGGLVDGFGSSGVFGSPSEMDYMLEGMMRMKLAQQKSMVAAQFMAACGSPML 237
Query: 294 HDKYIDFLMQQQNDPQRVAAAASAFNMGEKFCN-FSRGRMERNDFLAMFSGEKTNSASRQ 352
H + + GE+ N FS+GR ER D S S+Q
Sbjct: 238 H-------------------RHGSGHFGEECGNYFSQGRHERED-----------SVSKQ 267
Query: 353 IYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPH 412
IYLTFP+ES+F DEDVS YF FG V DVRIPYQQ+RM+GFVTF ETVR IL++GNPH
Sbjct: 268 IYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPH 327
Query: 413 FICDSRVLVKPYKEKGKVPDKRXXXX-XXXLERGDFFP-LSPSAFDSKEPYDFHLGQRVL 470
FICDSRVLVKPYKEKGK+ KR LERG++ P SPS DS+E Y+ LG R+
Sbjct: 328 FICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYSPSSSPSGKDSRELYECRLGPRMF 387
Query: 471 YNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNPIHHQRSFSVGAPFAFPHPL 530
+LRRK + +DL++ +RS S+G+P FP P
Sbjct: 388 SKKTQEMLRRK--------------------TEQADLQHAI---ERSPSIGSPSHFP-PR 423
Query: 531 SSHVISAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVD---PACIDDTEGENIKD 587
+H + S N+ E E + E D A ++ G N
Sbjct: 424 FNHSLL----------------FQSGNNNEEIMEGDSDRSEKDLQQVATSNEERGYN--- 464
Query: 588 SLNAEVTDLSKSVEQDLPDSLFASPTKAAGDYMSDFSTLTEVKESA 633
N S+E LPDSLF SP K+ Y ++ T KE++
Sbjct: 465 --NGFYKGQETSLENTLPDSLFGSPKKSGETYQTESDTEHNNKEAS 508
>AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19108533 FORWARD LENGTH=414
Length = 414
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 181/491 (36%), Positives = 246/491 (50%), Gaps = 115/491 (23%)
Query: 7 TNVVLSRIKNIEPENASKIMGY-LLMNLEDSELLRLACSPDPVLHTIIPRVKTHLGLTLT 65
T+++ S+I+ E ENAS+++ Y LL ++E +L+R+A PD ++ T + K LG
Sbjct: 7 TSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVDLGF--- 63
Query: 66 PSSPSTAARPISTTNNNPFNPFSKVSPRIPTPTNGF-DFSRNPFSLSGLPKNHPISPTSS 124
S + +RPI+ + S SPR NGF +FSRNP +P SS
Sbjct: 64 --SSNGFSRPINIHGQS----LSSSSPR-----NGFLEFSRNP-----------SNPLSS 101
Query: 125 SLLSYENIR------AASSFQPRVNNGDVDLVDEQQVNEF---FPFLNEPSNNDDAFDPH 175
SL + +R +S F+ + DEQQ +F F F +N++D F
Sbjct: 102 SL-TLNTLRDNKPNFNSSPFRESSSLFASSSGDEQQQQQFSNNFLF----TNDEDPF--- 153
Query: 176 LEPGIGGPNWHSVNNGDAHFHRRSFSASDAXXXXXXXXXXXXXXXXXKPCLYFARGFCKN 235
A+ H+RSFSA+DA C +
Sbjct: 154 -----------------ANSHKRSFSANDA-------------------CFESEEPWFGG 177
Query: 236 GSNC-KFVHVALPDTPDASAIVGSPGEL-MRREELLRFKVAQHQRLLAASQLVAGTSPSS 293
G+ C +F L D +S + GSP E+ E ++R K+AQ + ++AA + A SP
Sbjct: 178 GNGCHQFPQGGLVDGFGSSGVFGSPSEMDYMLEGMMRMKLAQQKSMVAAQFMAACGSPML 237
Query: 294 HDKYIDFLMQQQNDPQRVAAAASAFNMGEKFCN-FSRGRMERNDFLAMFSGEKTNSASRQ 352
H + + GE+ N FS+GR ER D S S+Q
Sbjct: 238 HRH-------------------GSGHFGEECGNYFSQGRHERED-----------SVSKQ 267
Query: 353 IYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPH 412
IYLTFP+ES+F DEDVS YF FG V DVRIPYQQ+RM+GFVTF ETVR IL++GNPH
Sbjct: 268 IYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPH 327
Query: 413 FICDSRVLVKPYKEKGKVPDKRXXXX-XXXLERGDFFP-LSPSAFDSKEPYDFHLGQRVL 470
FICDSRVLVKPYKEKGK+ KR LERG++ P SPS DS+E Y+ LG R+
Sbjct: 328 FICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYSPSSSPSGKDSRELYECRLGPRMF 387
Query: 471 YNPHDILLRRK 481
+LRRK
Sbjct: 388 SKKTQEMLRRK 398
>AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7400426-7401870 FORWARD LENGTH=296
Length = 296
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 173/285 (60%), Gaps = 27/285 (9%)
Query: 340 MFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYP 399
M G+K+NSAS+QIYLTFPA+S+F DEDVS YF FGPVQDVRIPYQQKRMFGFVTF++
Sbjct: 1 MGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHS 60
Query: 400 ETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR-XXXXXXXLERGDFFP-LSPSAFDS 457
ETVR+IL++GNPHFICDSRVLVKPYKEKG++ +KR +ERG+F P SPS DS
Sbjct: 61 ETVRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDS 120
Query: 458 KEPYDFHLGQRVLYNPHDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNP-IHHQR 516
++ +D HL R+ N +++ R+ RR SLQL D+ + +HHQR
Sbjct: 121 RDLFDSHLAPRMFSNTQEMM--RRKAEQADLQQAIEFQRRRFLSLQLPDMDSESFLHHQR 178
Query: 517 SFSVGAPFAFPHPLSSHVI--SAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVDP 574
S S+G+P F ++ ++ S S ++ + G SG Q E
Sbjct: 179 SLSIGSPVHFSPRVNQSMLFRSESTSDEVFEGNGDSG----------------HQSEATR 222
Query: 575 ACIDDTEGENI--KDSLNAEVTDLSK-SVEQDLPDSLFASPTKAA 616
A + DT G NI + N+ + + S+E LPDS FASP+K
Sbjct: 223 AFLSDT-GHNISQERGYNSHLNKGQETSLENTLPDSFFASPSKTG 266
>AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=406
Length = 406
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 125/207 (60%), Gaps = 34/207 (16%)
Query: 304 QQNDPQRVAAAASAFNMGEKFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTF 363
QQ++ QR A+A MG+ R ER D A ASRQIYLTFPA+S F
Sbjct: 117 QQSEAQR----AAALMMGDDLHKLGIWRPERIDLSAT-----ACPASRQIYLTFPADSIF 167
Query: 364 KDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKP 423
++EDVS+YFS FGPVQDVRIPYQQKRMFGFVTF+YPETV+ IL+KGNPHF+C SRVLVKP
Sbjct: 168 REEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKP 227
Query: 424 YKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYX 483
YKEKGKVPDK + P S++ DF LG R + D+L +R++
Sbjct: 228 YKEKGKVPDK--------------YRTKP----SRDIMDFQLGGRAFH--EDLLWKRRFE 267
Query: 484 XXXXXXXXXXXXXRRMKSLQLSDLKNN 510
R+ +LQL D++
Sbjct: 268 ERALELQST-----RLMNLQLLDVEKQ 289
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M +EAT +VLSRI+N++P NASKI+G LL+ + + E++RLA P +LH++I + K
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 60 LGLTLTPSSPSTA 72
L L+ +P TA
Sbjct: 61 LEERLSFLTPRTA 73
>AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 123/207 (59%), Gaps = 36/207 (17%)
Query: 304 QQNDPQRVAAAASAFNMGEKFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTF 363
QQ++ QR A+A MG+ R ER D A ASRQIYLTFPA+S F
Sbjct: 117 QQSEAQR----AAALMMGDDLHKLGIWRPERIDLSAT-----ACPASRQIYLTFPADSIF 167
Query: 364 KDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKP 423
++EDVS+YFS FGPVQDVRIPYQQKRMFGFVTF+YPETV+ IL+KGNPHF+C SRVLVKP
Sbjct: 168 REEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKP 227
Query: 424 YKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYX 483
YKEKGKVPDK S++ DF LG R + D+L +R++
Sbjct: 228 YKEKGKVPDKTKP--------------------SRDIMDFQLGGRAFH--EDLLWKRRFE 265
Query: 484 XXXXXXXXXXXXXRRMKSLQLSDLKNN 510
R+ +LQL D++
Sbjct: 266 ERALELQST-----RLMNLQLLDVEKQ 287
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M +EAT +VLSRI+N++P NASKI+G LL+ + + E++RLA P +LH++I + K
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 60 LGLTLTPSSPSTA 72
L L+ +P TA
Sbjct: 61 LEERLSFLTPRTA 73
>AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 123/207 (59%), Gaps = 36/207 (17%)
Query: 304 QQNDPQRVAAAASAFNMGEKFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTF 363
QQ++ QR A+A MG+ R ER D A ASRQIYLTFPA+S F
Sbjct: 117 QQSEAQR----AAALMMGDDLHKLGIWRPERIDLSAT-----ACPASRQIYLTFPADSIF 167
Query: 364 KDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKP 423
++EDVS+YFS FGPVQDVRIPYQQKRMFGFVTF+YPETV+ IL+KGNPHF+C SRVLVKP
Sbjct: 168 REEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVLVKP 227
Query: 424 YKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDFHLGQRVLYNPHDILLRRKYX 483
YKEKGKVPDK S++ DF LG R + D+L +R++
Sbjct: 228 YKEKGKVPDKTKP--------------------SRDIMDFQLGGRAFH--EDLLWKRRFE 265
Query: 484 XXXXXXXXXXXXXRRMKSLQLSDLKNN 510
R+ +LQL D++
Sbjct: 266 ERALELQST-----RLMNLQLLDVEKQ 287
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM-NLEDSELLRLACSPDPVLHTIIPRVKTH 59
M +EAT +VLSRI+N++P NASKI+G LL+ + + E++RLA P +LH++I + K
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
Query: 60 LGLTLTPSSPSTA 72
L L+ +P TA
Sbjct: 61 LEERLSFLTPRTA 73
>AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:1859011-1860931 REVERSE
LENGTH=536
Length = 536
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 41/242 (16%)
Query: 223 KPCLYFARGFCKNGSNCKFVH-VALPDTPDASAI------------VGSPGELMRRE--- 266
K C YF +GFCK+G+NC++ H +P+ + + V SP L + E
Sbjct: 160 KICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEI 219
Query: 267 -ELLRFK--------------VAQHQRLLAASQLVAGTSPSSHDKY-IDFLMQQQNDPQR 310
ELL+ + ++ R L A + + Y + L+ + + R
Sbjct: 220 IELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIR 279
Query: 311 VA---AAASAFNMGEKFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDED 367
+ + + E F ERN+ A+ +G SRQIYLTFPAES+F + D
Sbjct: 280 LVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAG------SRQIYLTFPAESSFTEHD 333
Query: 368 VSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEK 427
VS YF+ +G V+DVRIP QQKRM+GFVTF ETV+ IL+KGNPHFIC++RVLVKPY+EK
Sbjct: 334 VSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREK 393
Query: 428 GK 429
+
Sbjct: 394 SR 395
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLMNLEDS--ELLRLACSPDPVLHTIIPRVKT 58
M E+ NVV +RI+ +EPENA+KI GYLL+ E+ +++RLA PD V+ ++I VK
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 59 HLG 61
L
Sbjct: 61 ELA 63
>AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19645660-19646962 FORWARD LENGTH=381
Length = 381
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 35/209 (16%)
Query: 223 KPCLYFARGFCKNGSNCKFVHVALPDTPDASAIVGSPGELMRRE----ELLRFK------ 272
K C YF +GFCK+G+NC H L D V SPG L + E ELL+ +
Sbjct: 168 KICHYFNKGFCKHGNNC---HNNLSDEEH----VVSPGSLEKLEREIIELLKSRRGAPIS 220
Query: 273 -----VAQHQRLLAASQLVAGTSPSSHDKYIDF----LMQQQNDPQRVA---AAASAFNM 320
+ H++ + Q + S F L+ + + R+ + +
Sbjct: 221 IAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVIL 280
Query: 321 GEKFCNFSRGRMERNDFLAMFSGEKTNSASRQIYLTFPAESTFKDEDVSEYFSKFGPVQD 380
E F ER++ A+ +G SRQ+YLTFPAES+F + DVS YFS+ GPV+D
Sbjct: 281 AEDVSKFVEYTGERSEHGAILAG------SRQVYLTFPAESSFTEHDVSNYFSEVGPVED 334
Query: 381 VRIPYQQKRMFGFVTFVYPETVRLILSKG 409
VRIP QQKRM+GFVTFVY ETV+ IL+K
Sbjct: 335 VRIPCQQKRMYGFVTFVYMETVKRILAKA 363
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 1 MGSFEATNVVLSRIKNIEPENASKIMGYLLM--NLEDSELLRLACSPDPVLHTIIPRVKT 58
M EA NVV +RI +EPENASKI+GYLL+ + D +++RLA PD V+ ++I VK
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 59 HLG 61
L
Sbjct: 61 ELA 63
>AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=403
Length = 403
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 113/281 (40%), Gaps = 76/281 (27%)
Query: 362 TFKDEDVSEYFSKFGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLV 421
+F D+ VS YF FGPV VRIP Q+++++GFV+F ETV IL + NPH I +S V V
Sbjct: 185 SFTDQHVSTYFGNFGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 244
Query: 422 KPYKEKGKVPDKRXXXXXXXLERGDFFPLSPSAFDSKEPYDFHLG--------QRVLYNP 473
V +EP+ G +R
Sbjct: 245 TAAATTAGV-------------------------GWREPFSVGNGPKGAMSRPRRFRNET 279
Query: 474 HDILLRRKYXXXXXXXXXXXXXXRRMKSLQLSDLKNNPI-HHQRSFSVGAPFAFPHPLSS 532
H++L R RR+ +LQL ++N I HHQ S S+G+ FP S
Sbjct: 280 HEMLQRNTEQADPQQAIEVEDQIRRLSNLQLPGMENKSIHHHQPSPSIGSHAHFP----S 335
Query: 533 HVISAGLSSDIGDITGYSGGLTSTNSLETASEQQQPQKEVDPACIDDTEGENIKDSLNAE 592
V G + D+ +ET++E+ Q Q+
Sbjct: 336 QVREGGSGTGEKDL----------EQVETSNEEHQGQE---------------------- 363
Query: 593 VTDLSKSVEQDLPDSLFASPTKAAGDYMSDFSTLTEVKESA 633
KS+E LPDS F S TK +G+ S + E K+++
Sbjct: 364 -----KSLENTLPDSSFGS-TKESGETRQTESDIEETKKAS 398
>AT1G51530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=391
Length = 391
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 105/268 (39%), Gaps = 76/268 (28%)
Query: 375 FGPVQDVRIPYQQKRMFGFVTFVYPETVRLILSKGNPHFICDSRVLVKPYKEKGKVPDKR 434
FGPV VRIP Q+++++GFV+F ETV IL + NPH I +S V V V
Sbjct: 186 FGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNVTAAATTAGV---- 241
Query: 435 XXXXXXXLERGDFFPLSPSAFDSKEPYDFHLG--------QRVLYNPHDILLRRKYXXXX 486
+EP+ G +R H++L R
Sbjct: 242 ---------------------GWREPFSVGNGPKGAMSRPRRFRNETHEMLQRNTEQADP 280
Query: 487 XXXXXXXXXXRRMKSLQLSDLKNNPI-HHQRSFSVGAPFAFPHPLSSHVISAGLSSDIGD 545
RR+ +LQL ++N I HHQ S S+G+ FP S V G + D
Sbjct: 281 QQAIEVEDQIRRLSNLQLPGMENKSIHHHQPSPSIGSHAHFP----SQVREGGSGTGEKD 336
Query: 546 ITGYSGGLTSTNSLETASEQQQPQKEVDPACIDDTEGENIKDSLNAEVTDLSKSVEQDLP 605
+ +ET++E+ Q Q+ KS+E LP
Sbjct: 337 L----------EQVETSNEEHQGQE---------------------------KSLENTLP 359
Query: 606 DSLFASPTKAAGDYMSDFSTLTEVKESA 633
DS F S TK +G+ S + E K+++
Sbjct: 360 DSSFGS-TKESGETRQTESDIEETKKAS 386