Miyakogusa Predicted Gene

Lj2g3v2089770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2089770.1 Non Chatacterized Hit- tr|H9IKH3|H9IKH3_ATTCE
Uncharacterized protein OS=Atta cephalotes PE=4
SV=1,33.7,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; THUMP DOMAIN
CONTAINING PROTEIN 1-RELATED,NULL; THUMP,THUMP; THU,CUFF.38558.1
         (456 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12410.1 | Symbols:  | THUMP domain-containing protein | chr5...   296   3e-80

>AT5G12410.1 | Symbols:  | THUMP domain-containing protein |
           chr5:4021974-4023950 REVERSE LENGTH=376
          Length = 376

 Score =  296 bits (757), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/226 (64%), Positives = 178/226 (78%), Gaps = 1/226 (0%)

Query: 230 DVHAAAGNKTDDNEGDNDNIKTKTANELPVVKQCCKTNVPVQDSSNKVEKSIDTLIDEEL 289
           +V   A N+T   E D  N K    +E P  K C +   P+   +   EKSID LI+ EL
Sbjct: 150 EVKQLAENETVKEEEDKGNQKN-GGDEPPRKKTCTEEANPLAKVNENAEKSIDKLIEAEL 208

Query: 290 RELGDKKKRRFVKLESGCNGVVFIQMRKKDGDKSPKDIVHRIVTSAASTRKHMSRFILRM 349
           +ELGDK KRRF+KL+ GCNG+VFIQM+K+DGD SPK+IV   +TSAA+T+KHMSRFILR+
Sbjct: 209 KELGDKSKRRFMKLDPGCNGLVFIQMKKRDGDPSPKEIVQHAMTSAAATKKHMSRFILRL 268

Query: 350 LPIEVSCYASKEEISRAIKPLVEQNFPVPTQKPLKFAVMYEARANTGIDRMEIIDAVAKS 409
           LPIEVSCY S+EEISRAIKPLVEQ FP+ T+ P KFAV+Y ARANTG+DRM+II+ +AKS
Sbjct: 269 LPIEVSCYPSEEEISRAIKPLVEQYFPIETENPRKFAVLYGARANTGLDRMKIINTIAKS 328

Query: 410 VPGPHKVDLKNPDKTIVVEIARTVCLIGIIEKYKELSKYNLRELTS 455
           +P PHKVDL NP+ TIVVEI +TVCLIG++EKYKEL+KYNLR+LTS
Sbjct: 329 IPAPHKVDLSNPEMTIVVEIIKTVCLIGVVEKYKELAKYNLRQLTS 374



 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 56/74 (75%), Gaps = 2/74 (2%)

Query: 20 YLPHNKPVKK-GSYPLHPGVQGVFITCEGGREHQASREALNILESFYEDLVDGEHLSVKE 78
          Y P N+PVKK GSYPL PGVQG FI+C+GGRE QA++EA+N+++SF+E+L+ G    V  
Sbjct: 14 YRPQNRPVKKKGSYPLKPGVQGFFISCDGGREFQAAQEAINVIDSFFEELIQGTDSKVNP 73

Query: 79 -LLNRPKNKKITFA 91
           L   P NKK+TF+
Sbjct: 74 GLFGNPINKKVTFS 87