Miyakogusa Predicted Gene

Lj2g3v2088070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2088070.1 Non Chatacterized Hit- tr|I3S704|I3S704_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; no
description,WD40/YVTN repeat-li,CUFF.38545.1
         (326 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64350.1 | Symbols: SEH1H | Transducin/WD40 repeat-like super...   437   e-123
AT2G30050.1 | Symbols:  | transducin family protein / WD-40 repe...    68   1e-11
AT3G01340.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    65   9e-11
AT3G01340.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    65   9e-11

>AT1G64350.1 | Symbols: SEH1H | Transducin/WD40 repeat-like
           superfamily protein | chr1:23881582-23883073 FORWARD
           LENGTH=326
          Length = 326

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/324 (64%), Positives = 254/324 (78%), Gaps = 1/324 (0%)

Query: 1   MAKEVLTLDNGTTCSSWNYSGTRLAAGSADGTLSIXXXXXXXXXXXXXXXXXXXVHEGNI 60
           MAK + TLD+GTTCSSWN SG RLAAGS +G LSI                   V E +I
Sbjct: 1   MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVR-VSESSI 59

Query: 61  VNIVWVPPAYGDAVACISVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISL 120
           V IVW+P  YGDAVAC+  DG +S+ EE+ ED+  L+WK+CK   + S +VLDVQFG+S 
Sbjct: 60  VKIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSR 119

Query: 121 ASLKMVAAYSDGHMKVFELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQN 180
            SLKMVAAYSDG+++VFELL+PLELKNWQLQAEFQNVI+S+S+ GK   LSAS+S+NP  
Sbjct: 120 KSLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPMK 179

Query: 181 GGSQESSFLVGFNSNTSELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIG 240
           G  QE SF++ FNS++  LNS+K+WEFD+AH RWL VAELA+PEDKGD VYA++WAPNIG
Sbjct: 180 GEEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIG 239

Query: 241 RTYEIIAVATHKGLAIWHLGLNPDHDGRLPVERVAVLSGHDGMVWQMEWDMSGMTLATTG 300
           R YE++AVATHKG+ IWH+GL PD +GRLPV++V+ LSGH G VWQMEWDMSGMTLA+TG
Sbjct: 240 RPYEVVAVATHKGIGIWHVGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMSGMTLASTG 299

Query: 301 QDGMVRLWQSNLNGVWHQQAAFEP 324
            DGMV+LWQSNLNG WH+QA  EP
Sbjct: 300 SDGMVKLWQSNLNGEWHEQATLEP 323


>AT2G30050.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr2:12825540-12826448 FORWARD
           LENGTH=302
          Length = 302

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 122/316 (38%), Gaps = 42/316 (13%)

Query: 18  NYSGTRLAAGSADGTLSIXXXXXXXXXXXXXXXXXXXVHEGNIVNIVWVPPAYGDAVACI 77
           +Y G R+A  S+D T+ I                    H G +  + W  P YG  +A  
Sbjct: 20  DYYGKRIATASSDCTIKITGVSNNGGSQQLATLTG---HRGPVWEVAWAHPKYGSILASC 76

Query: 78  SVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISLASLKMVAAYSDGHMKVF 137
           S DG V L +E  ++    QW     F      V  + +      L +    SDG++ VF
Sbjct: 77  SYDGQVILWKEGNQN----QWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVF 132

Query: 138 ELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASIS-------FNPQNGGSQESSFLV 190
                      ++       + SVS +  A    A +S       +   +GG        
Sbjct: 133 TARADGGWDTSRIDQAHPVGVTSVS-WAPATAPGALVSSGLLDPVYKLASGGCD------ 185

Query: 191 GFNSNTSELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIGRTYEIIAVAT 250
                    N+ KVW+   A+  W      A+ +   D V  VAWAPN+G     IA  +
Sbjct: 186 ---------NTVKVWKL--ANGSWKMDCFPAL-QKHTDWVRDVAWAPNLGLPKSTIASGS 233

Query: 251 HKG-LAIWHLGLNPDH-DGRLPVERVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLW 308
             G + IW +G   +  +G+       VL      VW++ W ++G  LA +  +  V +W
Sbjct: 234 QDGKVIIWTVGKEGEQWEGK-------VLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVW 286

Query: 309 QSNLNGVWHQQAAFEP 324
           +  ++G W Q  A EP
Sbjct: 287 KEAVDGEWEQVTAVEP 302


>AT3G01340.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:127557-128465 REVERSE LENGTH=302
          Length = 302

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 26/308 (8%)

Query: 18  NYSGTRLAAGSADGTLSIXXXXXXXXXXXXXXXXXXXVHEGNIVNIVWVPPAYGDAVACI 77
           +Y G R+A  S+D T+ I                    H G +  + W  P +G  +A  
Sbjct: 20  DYYGKRVATASSDCTIKITGVSNSGGSQHLATLTG---HRGPVWQVAWAHPKFGSLLASC 76

Query: 78  SVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISLASLKMVAAYSDGHMKVF 137
           S DG + L +E  ++    QW     F      V  + +      L +    SDG++ VF
Sbjct: 77  SYDGQIILWKEGNQN----QWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVF 132

Query: 138 ELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQNGGSQESSFLVGFNSNTS 197
                      ++       + SVS +  A    A +S      G  +  + +      S
Sbjct: 133 SARADGGWDTTKIDQAHPVGVTSVS-WAPATEPGALVS-----SGMIDPVYKLASGGCDS 186

Query: 198 ELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIGRTYEIIAVATHKG-LAI 256
              + KVW+F     +      L       D V  VAWAPN+G     IA  +  G + I
Sbjct: 187 ---TVKVWKFSNGSWKMDCFPAL---NKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query: 257 WHLGLNPDHDGRLPVERVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVW 316
           W +G   +           VL      VW++ W ++G  LA +  +  V +W+ +++G W
Sbjct: 241 WTIGKEGEQ------WEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEW 294

Query: 317 HQQAAFEP 324
            Q    EP
Sbjct: 295 EQVTVVEP 302


>AT3G01340.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:127557-128465 REVERSE LENGTH=302
          Length = 302

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 26/308 (8%)

Query: 18  NYSGTRLAAGSADGTLSIXXXXXXXXXXXXXXXXXXXVHEGNIVNIVWVPPAYGDAVACI 77
           +Y G R+A  S+D T+ I                    H G +  + W  P +G  +A  
Sbjct: 20  DYYGKRVATASSDCTIKITGVSNSGGSQHLATLTG---HRGPVWQVAWAHPKFGSLLASC 76

Query: 78  SVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISLASLKMVAAYSDGHMKVF 137
           S DG + L +E  ++    QW     F      V  + +      L +    SDG++ VF
Sbjct: 77  SYDGQIILWKEGNQN----QWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVF 132

Query: 138 ELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQNGGSQESSFLVGFNSNTS 197
                      ++       + SVS +  A    A +S      G  +  + +      S
Sbjct: 133 SARADGGWDTTKIDQAHPVGVTSVS-WAPATEPGALVS-----SGMIDPVYKLASGGCDS 186

Query: 198 ELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIGRTYEIIAVATHKG-LAI 256
              + KVW+F     +      L       D V  VAWAPN+G     IA  +  G + I
Sbjct: 187 ---TVKVWKFSNGSWKMDCFPAL---NKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVII 240

Query: 257 WHLGLNPDHDGRLPVERVAVLSGHDGMVWQMEWDMSGMTLATTGQDGMVRLWQSNLNGVW 316
           W +G   +           VL      VW++ W ++G  LA +  +  V +W+ +++G W
Sbjct: 241 WTIGKEGEQ------WEGTVLKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEW 294

Query: 317 HQQAAFEP 324
            Q    EP
Sbjct: 295 EQVTVVEP 302