Miyakogusa Predicted Gene

Lj2g3v2088030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2088030.1 Non Chatacterized Hit- tr|B9RCP4|B9RCP4_RICCO
Coiled-coil domain-containing protein, putative
OS=Ric,31.02,2e-18,coiled-coil,NULL; seg,NULL,CUFF.38527.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41780.1 | Symbols:  | myosin heavy chain-related | chr5:1672...    82   5e-16
AT1G64320.1 | Symbols:  | myosin heavy chain-related | chr1:2386...    75   3e-14

>AT5G41780.1 | Symbols:  | myosin heavy chain-related |
           chr5:16723075-16724833 FORWARD LENGTH=537
          Length = 537

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 26/185 (14%)

Query: 61  ENLNVKLETQVADQEETIKKLTETIDQIHAENNQARIWSKKFRSYQQFTERKMDELTEEF 120
           E++  +L  ++ DQ++ +K+  + ID+   +    + WS   +      E+KM+EL E+F
Sbjct: 272 EDIIQRLSMEIKDQKKLLKEQKDAIDKFSEDQKLMKRWSFGSKLNTNLLEKKMEELAEDF 331

Query: 121 RRKMEDNIRILHQRIHVAEQLNNENKDSHKMTRQRYEQENNILGEKVASYEDEIRTLK-- 178
           R KMED+IRILH+RIHVAEQ++ E+K S+  TR   + E N  G +  S E + + +K  
Sbjct: 332 RMKMEDHIRILHRRIHVAEQIHLESKSSYIKTRDNTQTEEN-RGNRAVS-ETQFKKIKEM 389

Query: 179 -----ASPEEVSXXXXXXXXXXXXDFAAGKLEEYREYVLSLVSKMMSEVQFAKGWVKKRN 233
                A PE                 A  KLEE  E + + V+++  E+  A+ WVK+++
Sbjct: 390 VEQGLAGPE----------------MAIKKLEESGE-LGNRVTRLAKEIDSARKWVKEKD 432

Query: 234 GEMKQ 238
             MK 
Sbjct: 433 NNMKH 437


>AT1G64320.1 | Symbols:  | myosin heavy chain-related |
           chr1:23869036-23870548 FORWARD LENGTH=476
          Length = 476

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 19/180 (10%)

Query: 66  KLETQVADQEETIKKLTETIDQIHAENNQARIWSKKFRSYQQF------TERKMDELTEE 119
           +L  ++ DQ+  +K+  +TID+   +  Q++ WS  F S +         ERKM+EL E+
Sbjct: 210 RLSAKIKDQQRLLKEQKDTIDKFAEDQKQSKRWS--FGSSRDLKLNPNALERKMEELAED 267

Query: 120 FRRKMEDNIRILHQRIHVAEQLNNENKDSHKMTRQRYEQENNILGEKVASYEDEIRTLKA 179
           FR K+ED+IRIL++RIHVAEQ++ E+K+ +  TR    +EN    E +  +E +   +K 
Sbjct: 268 FRMKIEDHIRILYRRIHVAEQIHLESKNEYIKTRDML-KENKENRESLMFFETQFNKMKD 326

Query: 180 SPEEVSXXXXXXXXXXXXDFAAGKLEEYREYVLSLVSKMMSEVQFAKGWVKKRNGEMKQL 239
           + E+              + A  KLEE  E V + V+++  E++ AK WV ++  E++ L
Sbjct: 327 ALEK---------GYTGSETAMKKLEEAEE-VTNRVARIGKEMESAKLWVSEKKSEVETL 376