Miyakogusa Predicted Gene

Lj2g3v2087820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2087820.1 tr|A8ITW6|A8ITW6_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_189570 PE=4
SV=1,35.16,0.000000006, ,CUFF.38515.1
         (146 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   211   1e-55
AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   203   3e-53

>AT5G24610.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:8428577-8429017
           FORWARD LENGTH=146
          Length = 146

 Score =  211 bits (537), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/147 (69%), Positives = 121/147 (82%), Gaps = 4/147 (2%)

Query: 1   MEVLGKS-MVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICD 59
           MEV GKS MV   ANVI+LS+ILGRD     HKCDWKC+NE+VCGNMYRCKLTGLTH+CD
Sbjct: 1   MEVFGKSPMVVTSANVIYLSAILGRDCDG--HKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCDQRILYDNHSSLCRASGQVFSLTPTEEQAIRGVRRKLDANNSQTADSCGFK-RRREA 118
           KNC+QRILYDNHSSLCRASG++F L+  EEQA++GVRRKLDA  S  ++SC FK RRR+A
Sbjct: 59  KNCNQRILYDNHSSLCRASGRIFPLSSVEEQAVKGVRRKLDAAESHPSESCSFKRRRRDA 118

Query: 119 QLHPSHFEKSFSVVNPICSQVADGMDM 145
           Q H S FE+SF+ V+PICS   DGM++
Sbjct: 119 QFHASPFERSFTAVSPICSPAGDGMEL 145


>AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; BEST Arabidopsis thaliana protein match is:
           unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to
           55 proteins in 14 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18368201-18368644 FORWARD LENGTH=147
          Length = 147

 Score =  203 bits (517), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 124/149 (83%), Gaps = 5/149 (3%)

Query: 1   MEVLGKS-MVAGPANVIFLSSILGRDGPDPVHKCDWKCQNEHVCGNMYRCKLTGLTHICD 59
           MEV GKS +V G ANVI+LS+ILG +GP+  HKCDWKC+NE+VCGNMYRCKLTGLTH+CD
Sbjct: 1   MEVFGKSHVVVGSANVIYLSAILGHEGPN--HKCDWKCENENVCGNMYRCKLTGLTHVCD 58

Query: 60  KNCDQRILYDNHSSLCRASGQVFSLTPTEEQAIRGVRRKL-DANNSQTADSCGFKRRREA 118
           KNC+QRILYDNH+SLCRASG++F L+  EEQA++GVRRKL D +  Q ++SC  +RRR+A
Sbjct: 59  KNCNQRILYDNHNSLCRASGRIFPLSLVEEQAVKGVRRKLDDESQQQPSESCVKRRRRDA 118

Query: 119 QLHPSHFEKSFSVVNPICSQV-ADGMDMS 146
           Q H S FE+SF+ V+P CSQ   DGM+++
Sbjct: 119 QFHSSPFERSFAAVSPFCSQAGGDGMEIN 147