Miyakogusa Predicted Gene

Lj2g3v2087720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2087720.1 Non Chatacterized Hit- tr|G7ZX45|G7ZX45_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,25.78,6e-18,Rep_fac-A_C,Replication factor A, C-terminal;
Nucleic acid-binding proteins,Nucleic acid-binding, OB,CUFF.38510.1
         (395 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    52   5e-07

>AT2G05642.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr2:2098253-2100867 REVERSE LENGTH=532
          Length = 532

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 21/174 (12%)

Query: 124 GVCVTYGGIVGLIRDEPWTYPSC-ICHDELI---------VRTGVYECVRCDRFFYQMIR 173
           G C     I  +    PW Y  C IC  ++          +  G YEC +CD F      
Sbjct: 267 GACNIIASIFSIDTKVPWFYIGCNICFKKVSPYFNPETEEIEAGKYECEKCDTFVTTTST 326

Query: 174 RYRLKIEVFDGYQSAVFVLSDREVKEVMKKSFEKFVIPFEAQLDVEFPLEVEENVI---G 230
           R+R+++ V D    A F+L D++V +++ KS  + +   E Q+      ++ + ++   G
Sbjct: 327 RFRVQVTVLDHTGEASFLLFDQDVIKLIHKSAYELL---EQQVQFNRSDKIPQELLDLEG 383

Query: 231 KKMLFKVERIAGLTYNGTPCYEVIRVCSDLELIEMFRSGLAVTTPLQGSLDDAN 284
           ++ +F ++      ++    + V  +    E+++ F+  L     LQ +  D N
Sbjct: 384 RQFVFTIQGSDSTKFSRPSIFRVYELTDKPEIVQKFQENL-----LQMNTTDPN 432