Miyakogusa Predicted Gene
- Lj2g3v2051030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2051030.1 tr|B9GKD9|B9GKD9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_815072 PE=4 SV=1,61.9,2e-19,
,CUFF.38467.1
(98 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69230.2 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-260... 77 3e-15
AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-260... 77 3e-15
AT1G26355.1 | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118... 70 3e-13
AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 | chr4:12257914-122... 69 8e-13
AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078405-5078... 64 1e-11
AT2G03680.2 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-11218... 59 5e-10
AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-11218... 59 5e-10
AT3G02180.2 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-40545... 54 2e-08
AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-40545... 54 2e-08
>AT1G69230.2 | Symbols: SP1L2 | SPIRAL1-like2 |
chr1:26026543-26027085 REVERSE LENGTH=110
Length = 110
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKT-------APLPPYGIDIDNNSPDAGAPP 53
M RG ++GGGQSSLGYLF S E P KT A PP N P
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60
Query: 54 ---NTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
N+ A + R++G N GNF+TDRPSTKV S PGG SSL YLFG
Sbjct: 61 AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106
>AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 |
chr1:26026543-26027085 REVERSE LENGTH=110
Length = 110
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 1 MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKT-------APLPPYGIDIDNNSPDAGAPP 53
M RG ++GGGQSSLGYLF S E P KT A PP N P
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60
Query: 54 ---NTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
N+ A + R++G N GNF+TDRPSTKV S PGG SSL YLFG
Sbjct: 61 AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106
>AT1G26355.1 | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611
REVERSE LENGTH=113
Length = 113
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 1 MSRGDNSGGGQSSLGYLFRSEEQP-----------SQPQPTKTAPLPPYGIDIDNNSPDA 49
M RG + GGGQSSLGYLF S E P S+ P P P + + +
Sbjct: 1 MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKH-VAAQTVNVTK 59
Query: 50 GAPPNTKVAVSNN--RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
P + +NN R+ G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 60 QIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108
>AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 |
chr4:12257914-12258297 REVERSE LENGTH=99
Length = 99
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 7/64 (10%)
Query: 38 YGIDIDNNSPDAGAPPNTKVAVSNN---RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYL 94
YG+D +A P +SNN R QG N GNFVTDRP+TKVKSVPGG SSLGYL
Sbjct: 40 YGVDSTEEDHEADQKP----KISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYL 95
Query: 95 FGDK 98
FGDK
Sbjct: 96 FGDK 99
>AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078405-5078863
FORWARD LENGTH=127
Length = 127
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 59/118 (50%), Gaps = 25/118 (21%)
Query: 2 SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTAPLPPYGIDIDNNSPDAGAPPNTKVAVS- 60
+RG NSGGG+SSLGYLF S E S P+P K + + GA K +
Sbjct: 4 ARGVNSGGGESSLGYLFGSGE--SVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTT 61
Query: 61 --------------------NN--RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
NN RS G N GNF+T+RPSTKV + PGG SSLGYLFG
Sbjct: 62 TTTGDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119
>AT2G03680.2 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-1121850
FORWARD LENGTH=119
Length = 119
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 1 MSRGDNSGGGQSSLGYLFRSEEQPSQP--------QPTKTAPLPPYGI-----------D 41
M RG++ GGGQSSL YLF + +P + P PP
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 42 IDNNSPDAGAPPNTKVAVSN-NRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLF 95
++ + P K V+N R++G N GNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61 VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115
>AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-1121850
FORWARD LENGTH=119
Length = 119
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 1 MSRGDNSGGGQSSLGYLFRSEEQPSQP--------QPTKTAPLPPYGI-----------D 41
M RG++ GGGQSSL YLF + +P + P PP
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 42 IDNNSPDAGAPPNTKVAVSN-NRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLF 95
++ + P K V+N R++G N GNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61 VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115
>AT3G02180.2 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-405457
FORWARD LENGTH=122
Length = 122
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 55/115 (47%), Gaps = 26/115 (22%)
Query: 2 SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTA-----------------PLPPYGIDI-D 43
+RG N+G +SSLGYLF S QPS P+ + D
Sbjct: 4 ARGVNNGVNESSLGYLFGSG-QPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTD 62
Query: 44 NNSPDAGA--PPNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
N AG PN RS+G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 63 NKKTSAGVRGSPNNYF-----RSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112
>AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-405457
FORWARD LENGTH=122
Length = 122
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 55/115 (47%), Gaps = 26/115 (22%)
Query: 2 SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTA-----------------PLPPYGIDI-D 43
+RG N+G +SSLGYLF S QPS P+ + D
Sbjct: 4 ARGVNNGVNESSLGYLFGSG-QPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTD 62
Query: 44 NNSPDAGA--PPNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
N AG PN RS+G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 63 NKKTSAGVRGSPNNYF-----RSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112