Miyakogusa Predicted Gene

Lj2g3v2051030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2051030.1 tr|B9GKD9|B9GKD9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_815072 PE=4 SV=1,61.9,2e-19,
,CUFF.38467.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69230.2 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-260...    77   3e-15
AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 | chr1:26026543-260...    77   3e-15
AT1G26355.1 | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118...    70   3e-13
AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 | chr4:12257914-122...    69   8e-13
AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078405-5078...    64   1e-11
AT2G03680.2 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-11218...    59   5e-10
AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-11218...    59   5e-10
AT3G02180.2 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-40545...    54   2e-08
AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-40545...    54   2e-08

>AT1G69230.2 | Symbols: SP1L2 | SPIRAL1-like2 |
           chr1:26026543-26027085 REVERSE LENGTH=110
          Length = 110

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKT-------APLPPYGIDIDNNSPDAGAPP 53
           M RG ++GGGQSSLGYLF S E P      KT       A  PP      N        P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 54  ---NTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
              N+  A +  R++G N GNF+TDRPSTKV S PGG SSL YLFG
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106


>AT1G69230.1 | Symbols: SP1L2 | SPIRAL1-like2 |
           chr1:26026543-26027085 REVERSE LENGTH=110
          Length = 110

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 58/106 (54%), Gaps = 10/106 (9%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQPQPTKT-------APLPPYGIDIDNNSPDAGAPP 53
           M RG ++GGGQSSLGYLF S E P      KT       A  PP      N        P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 54  ---NTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
              N+  A +  R++G N GNF+TDRPSTKV S PGG SSL YLFG
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106


>AT1G26355.1 | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611
           REVERSE LENGTH=113
          Length = 113

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 58/109 (53%), Gaps = 14/109 (12%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQP-----------SQPQPTKTAPLPPYGIDIDNNSPDA 49
           M RG + GGGQSSLGYLF S E P           S+  P    P P + +     +   
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKH-VAAQTVNVTK 59

Query: 50  GAPPNTKVAVSNN--RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
             P     + +NN  R+ G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 60  QIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108


>AT4G23496.1 | Symbols: SP1L5 | SPIRAL1-like5 |
          chr4:12257914-12258297 REVERSE LENGTH=99
          Length = 99

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 7/64 (10%)

Query: 38 YGIDIDNNSPDAGAPPNTKVAVSNN---RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYL 94
          YG+D      +A   P     +SNN   R QG N GNFVTDRP+TKVKSVPGG SSLGYL
Sbjct: 40 YGVDSTEEDHEADQKP----KISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYL 95

Query: 95 FGDK 98
          FGDK
Sbjct: 96 FGDK 99


>AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078405-5078863
           FORWARD LENGTH=127
          Length = 127

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 59/118 (50%), Gaps = 25/118 (21%)

Query: 2   SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTAPLPPYGIDIDNNSPDAGAPPNTKVAVS- 60
           +RG NSGGG+SSLGYLF S E  S P+P K      +       +   GA    K   + 
Sbjct: 4   ARGVNSGGGESSLGYLFGSGE--SVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTT 61

Query: 61  --------------------NN--RSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
                               NN  RS G N GNF+T+RPSTKV + PGG SSLGYLFG
Sbjct: 62  TTTGDKNKTEENSAGVRGSPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFG 119


>AT2G03680.2 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-1121850
           FORWARD LENGTH=119
          Length = 119

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQP--------QPTKTAPLPPYGI-----------D 41
           M RG++ GGGQSSL YLF  +    +P          +   P PP               
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 42  IDNNSPDAGAPPNTKVAVSN-NRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLF 95
           ++    +   P   K  V+N  R++G N GNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61  VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115


>AT2G03680.1 | Symbols: SPR1, SKU6 | spiral1 | chr2:1121398-1121850
           FORWARD LENGTH=119
          Length = 119

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 1   MSRGDNSGGGQSSLGYLFRSEEQPSQP--------QPTKTAPLPPYGI-----------D 41
           M RG++ GGGQSSL YLF  +    +P          +   P PP               
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 42  IDNNSPDAGAPPNTKVAVSN-NRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLF 95
           ++    +   P   K  V+N  R++G N GNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61  VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115


>AT3G02180.2 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-405457
           FORWARD LENGTH=122
          Length = 122

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 55/115 (47%), Gaps = 26/115 (22%)

Query: 2   SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTA-----------------PLPPYGIDI-D 43
           +RG N+G  +SSLGYLF S  QPS                         P+      + D
Sbjct: 4   ARGVNNGVNESSLGYLFGSG-QPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTD 62

Query: 44  NNSPDAGA--PPNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
           N    AG    PN        RS+G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 63  NKKTSAGVRGSPNNYF-----RSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112


>AT3G02180.1 | Symbols: SP1L3 | SPIRAL1-like3 | chr3:404989-405457
           FORWARD LENGTH=122
          Length = 122

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 55/115 (47%), Gaps = 26/115 (22%)

Query: 2   SRGDNSGGGQSSLGYLFRSEEQPSQPQPTKTA-----------------PLPPYGIDI-D 43
           +RG N+G  +SSLGYLF S  QPS                         P+      + D
Sbjct: 4   ARGVNNGVNESSLGYLFGSG-QPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTD 62

Query: 44  NNSPDAGA--PPNTKVAVSNNRSQGPNLGNFVTDRPSTKVKSVPGGHSSLGYLFG 96
           N    AG    PN        RS+G N GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 63  NKKTSAGVRGSPNNYF-----RSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFG 112