Miyakogusa Predicted Gene

Lj2g3v2017700.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2017700.2 Non Chatacterized Hit- tr|I3SEL6|I3SEL6_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,82,2e-18,BAH,Bromo adjacent homology (BAH) domain;
TFIIS_CENTRAL,Transcription elongation factor S-II,
centra,CUFF.38450.2
         (385 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH) domain-c...   469   e-132
AT2G25120.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...   157   1e-38
AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...   154   8e-38
AT3G43990.1 | Symbols:  | Bromo-adjacent homology (BAH) domain-c...   120   1e-27
AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    96   4e-20
AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    96   4e-20
AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like ...    96   4e-20

>AT4G11560.1 | Symbols:  | bromo-adjacent homology (BAH)
           domain-containing protein | chr4:7000095-7003445 REVERSE
           LENGTH=587
          Length = 587

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/387 (59%), Positives = 288/387 (74%), Gaps = 18/387 (4%)

Query: 1   MVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPK 60
           M+ GQWFYRPEEAEK+GGG+W S DTRELFYSFH D++PAESVMH+CVV+F+P HKQLPK
Sbjct: 165 MILGQWFYRPEEAEKRGGGNWQSSDTRELFYSFHRDEVPAESVMHRCVVYFVPAHKQLPK 224

Query: 61  RKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPD 120
           RK +PGF+V+KVYDTVE+KLW LTDKDYED KQ+EID LVKKT+  +G+  D+E ED   
Sbjct: 225 RKNNPGFIVRKVYDTVEKKLWKLTDKDYEDSKQREIDVLVKKTMNVLGDLPDLESEDMLV 284

Query: 121 DQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
           DQE+++K KRS R+ ++SP DV +EE      D   K ETPGS    +SEHY IL  F++
Sbjct: 285 DQENVLKAKRSFRKVNISPVDVRREE------DASLKAETPGSGAGISSEHYAILEKFDS 338

Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
           LTGD  RDK L + L+ +Q++C   ++ +  ++ + V  D         +S +  D +D 
Sbjct: 339 LTGDAHRDKCLGKLLEAVQHICYIPENKQAGDE-AKVGSD---------ASHLEQDEKDT 388

Query: 241 GQKSSK--PFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLL 298
             ++ K   F WPDAAV  + ALE ASH + +SDFQKYNQK+R L FNLKN A LARRLL
Sbjct: 389 KPENGKDEKFLWPDAAVPQVCALENASHASLASDFQKYNQKMRTLVFNLKNTALLARRLL 448

Query: 299 NGELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGLRDIIHA 358
           NGELEP+ ILNM+ +ELKEGLTA+E TKKEPD+++ MQMT  RCSRC +  VGLRDII A
Sbjct: 449 NGELEPATILNMSPTELKEGLTADETTKKEPDDADRMQMTSVRCSRCSQLTVGLRDIIQA 508

Query: 359 GHNDRYQLECVSCGNSWYASRDEVSSL 385
           GH DRYQLECV CG SWYASRDEVS+L
Sbjct: 509 GHGDRYQLECVDCGYSWYASRDEVSTL 535


>AT2G25120.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr2:10689934-10691569
           FORWARD LENGTH=380
          Length = 380

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/288 (35%), Positives = 146/288 (50%), Gaps = 73/288 (25%)

Query: 5   QWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEH 64
            WFYRPE+ +KK  G W S+D+R LFYSFH D++ AESV HKCVV+F+P +KQ+P R+EH
Sbjct: 135 HWFYRPEDVDKKHVGKWESKDSRNLFYSFHRDEVFAESVKHKCVVNFVPENKQIPNRREH 194

Query: 65  PGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDDQED 124
           P F+VQ VYD V++K+   TDK+++  ++ EID LV KT  R+G        D PD ++D
Sbjct: 195 PCFIVQNVYDFVKKKVRKFTDKNFDVHQKNEIDRLVAKTSLRLG--------DLPDIEKD 246

Query: 125 LV----KNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNA 180
            V    K KR+++RKS             PK+               ++ +  IL  F+ 
Sbjct: 247 QVTKTSKGKRTVQRKS-------------PKT---------------STVYKSILEDFDL 278

Query: 181 LTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDK 240
           LTGD  RDK L   L+ +++ C +                                 + K
Sbjct: 279 LTGDSDRDKRLGELLEAVKHECRT--------------------------------SKKK 306

Query: 241 GQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLK 288
           G +    + WPD  V  + ALE   +D+ + D  KY+ KL  L   LK
Sbjct: 307 GARDDDSY-WPDDVVPVVRALEHVFYDSMAEDMSKYHHKLEILVDELK 353


>AT4G23120.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr4:12113308-12115523
           FORWARD LENGTH=360
          Length = 360

 Score =  154 bits (390), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 145/284 (51%), Gaps = 57/284 (20%)

Query: 5   QWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEH 64
           QW YRPEE EKK  G+W S+ +R+LFYSFH D++ AESV   C+VHF+  +KQ+P R++H
Sbjct: 97  QWLYRPEEVEKKYVGNWKSKGSRDLFYSFHRDEVFAESVKDDCIVHFVQENKQIPNRRKH 156

Query: 65  PGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDDQED 124
           PGF+VQ VYD V++KL  LT   ++  +++EID  V+KT+ RIG               D
Sbjct: 157 PGFIVQHVYDNVKKKLRKLTFNGFDLQQKREIDHFVEKTILRIGHL------------RD 204

Query: 125 LVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRILVSFNALTGD 184
           +VK +++L         +S+ +  VP+S      ET     N  +    IL SF+ LTGD
Sbjct: 205 IVKEQKTL---------ISRSKRTVPQSYIIKAVETSRESNNVVNS---ILESFDLLTGD 252

Query: 185 VQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKGQKS 244
             RDK LE  L+ ++  C     T R  +  + +                          
Sbjct: 253 SDRDKSLEELLEVVKPKC----RTSRKKQAGDYDSF------------------------ 284

Query: 245 SKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLK 288
                WP+  VS + ALE+A +D+   D  KY+ K+  L   LK
Sbjct: 285 -----WPNDVVSVVSALEQALYDSLKDDIAKYSNKVEILVGKLK 323


>AT3G43990.1 | Symbols:  | Bromo-adjacent homology (BAH)
           domain-containing protein | chr3:15782538-15785178
           REVERSE LENGTH=380
          Length = 380

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 5/149 (3%)

Query: 5   QWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEH 64
           QWFYR E+ E+K  G W + + RE+F+SFH D++ AESV +KC+V+F+P  KQ+P R  H
Sbjct: 123 QWFYRREDIEEKHFGKWKTENPREIFFSFHCDEVFAESVKYKCLVYFVPDDKQIPNRIHH 182

Query: 65  PGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLDVEPEDAPDDQED 124
            GF+VQ VYD V +K+   + + +E+ ++ EID LV KTV RIG  +DVE          
Sbjct: 183 SGFIVQMVYDNVRKKVRKFSHEGFEEEQKFEIDMLVAKTVSRIGNLVDVEKVQTT----T 238

Query: 125 LVKNKRSLRR-KSVSPPDVSKEEEGVPKS 152
           + + KR +R+ + +S   +S++ E +P S
Sbjct: 239 IPRRKRIVRKCERMSSNPISEKLESLPSS 267



 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 254 AVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNGELEPSKILNMT 311
            V  ++ALE+A +D+F+ D  KYN KL  L   LKN+  LA RLLNGEL+P + + M 
Sbjct: 298 VVQMVLALEEALYDSFADDVPKYNYKLELLVERLKNSRVLATRLLNGELKPEQAIKMA 355


>AT3G48050.2 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 6   WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
           W YRP E  K G G  +  +  ELFYSFH D+IPA S++H C V F+P   +LP      
Sbjct: 89  WLYRPTEL-KLGKGILLEAEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGISS- 146

Query: 66  GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKT 103
            FV ++VYD    +LW LTD+DY D +Q E+D+L+ KT
Sbjct: 147 -FVCRRVYDVTNERLWWLTDQDYIDDRQLEVDKLLCKT 183


>AT3G48050.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17734270-17739412 REVERSE LENGTH=1613
          Length = 1613

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 6   WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
           W YRP E  K G G  +  +  ELFYSFH D+IPA S++H C V F+P   +LP      
Sbjct: 89  WLYRPTEL-KLGKGILLEAEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGISS- 146

Query: 66  GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKT 103
            FV ++VYD    +LW LTD+DY D +Q E+D+L+ KT
Sbjct: 147 -FVCRRVYDVTNERLWWLTDQDYIDDRQLEVDKLLCKT 183


>AT3G48060.1 | Symbols:  | BAH domain ;TFIIS helical bundle-like
           domain | chr3:17743234-17748372 REVERSE LENGTH=1611
          Length = 1611

 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 6   WFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHP 65
           W YRP E  K G G  +  +  ELFYSFH D+IPA S++H C V F+P   +LP      
Sbjct: 89  WLYRPTEL-KLGKGILLEAEPNELFYSFHEDNIPAASLLHPCKVAFLPRGVELPSGISS- 146

Query: 66  GFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKT 103
            FV ++VYD    +LW LTD+DY D +Q E+D+L+ KT
Sbjct: 147 -FVCRRVYDVTNERLWWLTDQDYIDDRQLEVDKLLCKT 183