Miyakogusa Predicted Gene

Lj2g3v2017300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2017300.1 tr|Q4V3D3|Q4V3D3_ARATH At4g00752 OS=Arabidopsis
thaliana GN=At4g00752 PE=2 SV=1,29.89,3e-17,no description,NULL;
seg,NULL; ARA4-INTERACTING PROTEIN,NULL; FAS-ASSOCIATED PROTEIN,NULL;
UBA-like,,CUFF.38425.1
         (378 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein...   139   2e-33
AT4G23040.1 | Symbols:  | Ubiquitin-like superfamily protein | c...   138   7e-33
AT4G00752.1 | Symbols:  | UBX domain-containing protein | chr4:3...    66   4e-11

>AT4G11740.1 | Symbols: SAY1 | Ubiquitin-like superfamily protein |
           chr4:7071955-7075256 FORWARD LENGTH=564
          Length = 564

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/338 (38%), Positives = 175/338 (51%), Gaps = 41/338 (12%)

Query: 3   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 62
           MA PNQEAIDTFI+ITG S  +ALQKL+EH G+LN+AVNA+FSEGDR +         V 
Sbjct: 1   MATPNQEAIDTFISITGASDAVALQKLEEHRGDLNQAVNAYFSEGDRNV---------VR 51

Query: 63  AALQDDFMDIDDELHADELRGPLPLLSAART---NPFTLHDPTRGRSIFDSHLDPTT-QA 118
            A  +D  ++D +      + PL + +AART    PF+L D    R +FDS  DP   + 
Sbjct: 52  EAPVNDDDEMDIDDVIPAPQSPLSMFNAARTIGRPPFSLLDSDFARRVFDS--DPLMPRP 109

Query: 119 PFVTLPREVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGP-DIQGIIXXXXXXX 177
           PFV+ PREVR+IPIEVKD   S P G    +PTIEDVT +    GP   QG +       
Sbjct: 110 PFVSHPREVRQIPIEVKDS--SGPSGRSSDAPTIEDVTETAHVQGPVTTQGTV------- 160

Query: 178 XXXXXXXXAHQDEQHNILGDTSRDQSAMPSAPRFENLPDYSNDXXXXXXXXXXXXXXXXX 237
                   +  D     +G + +D+ A   A    N  DY ND                 
Sbjct: 161 ---IIDEESDDDIPFAPMGRSRQDRPAGSVA--NNNNQDY-NDIEEEMIRAAIEASKKEA 214

Query: 238 XXLGRQTDLSEAGPQSMQSDLEDPELAHAVSLSLKTAEQEKALRKQG--GEDGDVGASTG 295
              G    L E  P  M+   +D ++A AV++SLK+AE+E  LR QG      ++GAS  
Sbjct: 215 E--GSSNPLLEERPLHME---DDDDIAIAVTMSLKSAEEE-VLRSQGYKASTSEIGASAV 268

Query: 296 PSKSSEVELQEMTSNERLQTGSSSFQDEGEDLEEQPLV 333
            +     + Q +  N RL   SS F D+ +D++EQPLV
Sbjct: 269 TAAQGPQDTQAL--NGRLAAPSSPFDDDSDDVDEQPLV 304


>AT4G23040.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr4:12075672-12078622 REVERSE LENGTH=525
          Length = 525

 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 104/167 (62%), Gaps = 29/167 (17%)

Query: 3   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 62
           MA P QEAIDTF+ ITG S  +A++KL+E+ GNLN AVNA+F+ GD+             
Sbjct: 1   MATPTQEAIDTFMTITGSSNAVAVRKLEEYRGNLNRAVNAYFTHGDQN------------ 48

Query: 63  AALQDDFMDIDDELHADELRGPLPLLSAAR-TNPFTLHDPTRGRSIFDSHLDPT-TQAPF 120
                D MDIDD        G  P+LS AR T+PF L DP  GRS+FD+  DP  ++ PF
Sbjct: 49  ---SYDAMDIDD--------GVTPVLSEARTTDPFPLRDPNFGRSLFDN--DPVMSRPPF 95

Query: 121 VTLPREVREIPIEVKDGSQSAPQGSHDPSPTIEDVTGSVQANGPDIQ 167
           V+ PRE REIPIEVKD   + P G  + +PTIEDVT + QA+GP  Q
Sbjct: 96  VSHPREAREIPIEVKDS--NGPSGQSNDAPTIEDVTETAQAHGPAAQ 140


>AT4G00752.1 | Symbols:  | UBX domain-containing protein |
           chr4:317771-320793 REVERSE LENGTH=469
          Length = 469

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 15/117 (12%)

Query: 3   MAMPNQEAIDTFINITGLSQPIALQKLQEHGGNLNEAVNAHFSEGDRGLSTSVHNTSAVA 62
           M  P ++AI ++++ITG S+ +A+Q+L+EHG NL EA+NAHF + +R    S+++ S++ 
Sbjct: 1   MVSPTRDAIQSYMSITGASESLAIQRLEEHGNNLPEAINAHFRDVER----SIYDDSSLD 56

Query: 63  AALQDDFMDIDDELHADELR---------GPLP-LLSAART-NPFTLHDPTRGRSIF 108
                + ++ ++ +   E R         G LP +LSAAR   P  L DP   R+I 
Sbjct: 57  TRSDYNVVEDNNHVRGSETRPVNESRPVPGALPSILSAARAFRPSLLLDPNYRRNIL 113