Miyakogusa Predicted Gene

Lj2g3v2003120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2003120.1 CUFF.38433.1
         (443 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA sy...   777   0.0  
AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 | hydroxymethyl...   667   0.0  

>AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA
           synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl
           coenzyme A synthase | chr4:7109124-7111901 REVERSE
           LENGTH=461
          Length = 461

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/445 (80%), Positives = 408/445 (91%), Gaps = 2/445 (0%)

Query: 1   MAKNVGILALDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMSFCTDVEDVISMSLTV 60
           MAKNVGILA+DIYFPPTCVQQEALEAHDGASKGKYTIGLGQDC++FCT++EDVISMS   
Sbjct: 1   MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNA 60

Query: 61  VNSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGG 120
           V SL EKY+IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGG
Sbjct: 61  VTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGG 120

Query: 121 TAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPMSFESK 180
           TAAL NCVNWVESNSWDGRYGLV+CTDSAVYAEGPARPTGGAAAIAMLIGPDAP+ FESK
Sbjct: 121 TAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESK 180

Query: 181 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQFSISD 240
           LR SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYKH  +K+EK+ GK+FSI+D
Sbjct: 181 LRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSIND 240

Query: 241 AEYFVFHSPYNKLVQKSFARLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQSRDLEK 300
           A+Y VFHSPYNKLVQKSFARL+++DFLRN S++DE AKEK  P+++L+ +ESYQSRDLEK
Sbjct: 241 ADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQSRDLEK 300

Query: 301 ASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILFSYGSG 360
            SQQ+AKP YD KVQPTTLIPK+VGNMYTASLYAAFASLIH KH+ LAGKRV++FSYGSG
Sbjct: 301 VSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSG 360

Query: 361 LTSTMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVEILKLMEHRYGAKEFV 420
            T+TMFSL+ ++ + PFS+SNIA VMDV GKLK+RHE+ PEKFVE +KLMEHRYGAK+FV
Sbjct: 361 STATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFV 420

Query: 421 TSKD--ISLLSPGTFYLTEVDSMYR 443
           T+K+  I LL+PGT+YL EVDS+YR
Sbjct: 421 TTKEGIIDLLAPGTYYLKEVDSLYR 445


>AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 |
           hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase /
           3-hydroxy-3-methylglutaryl coenzyme A synthase |
           chr4:7109124-7111213 REVERSE LENGTH=406
          Length = 406

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/390 (79%), Positives = 353/390 (90%), Gaps = 2/390 (0%)

Query: 56  MSLTVVNSLLEKYEIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTN 115
           MS   V SL EKY+IDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTN
Sbjct: 1   MSFNAVTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTN 60

Query: 116 ACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPM 175
           ACYGGTAAL NCVNWVESNSWDGRYGLV+CTDSAVYAEGPARPTGGAAAIAMLIGPDAP+
Sbjct: 61  ACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPI 120

Query: 176 SFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDTCYKHFNHKYEKLHGKQ 235
            FESKLR SHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALD+CYKH  +K+EK+ GK+
Sbjct: 121 VFESKLRASHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKE 180

Query: 236 FSISDAEYFVFHSPYNKLVQKSFARLVFSDFLRNPSAVDEVAKEKLGPFATLSDNESYQS 295
           FSI+DA+Y VFHSPYNKLVQKSFARL+++DFLRN S++DE AKEK  P+++L+ +ESYQS
Sbjct: 181 FSINDADYIVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLTLDESYQS 240

Query: 296 RDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKHSTLAGKRVILF 355
           RDLEK SQQ+AKP YD KVQPTTLIPK+VGNMYTASLYAAFASLIH KH+ LAGKRV++F
Sbjct: 241 RDLEKVSQQIAKPFYDAKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMF 300

Query: 356 SYGSGLTSTMFSLQFSEGQHPFSLSNIARVMDVAGKLKSRHEFPPEKFVEILKLMEHRYG 415
           SYGSG T+TMFSL+ ++ + PFS+SNIA VMDV GKLK+RHE+ PEKFVE +KLMEHRYG
Sbjct: 301 SYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYG 360

Query: 416 AKEFVTSKD--ISLLSPGTFYLTEVDSMYR 443
           AK+FVT+K+  I LL+PGT+YL EVDS+YR
Sbjct: 361 AKDFVTTKEGIIDLLAPGTYYLKEVDSLYR 390