Miyakogusa Predicted Gene

Lj2g3v2003110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2003110.1 Non Chatacterized Hit- tr|F6HUI7|F6HUI7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,86.71,0,CHLOROPLAST STEM-LOOP-BINDING PROTEIN,NULL; NAD DEPENDENT
EPIMERASE/DEHYDRATASE,NULL; RmlD_sub_bind,,CUFF.38432.1
         (301 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63000.1 | Symbols: NRS/ER, UER1 | nucleotide-rhamnose syntha...   524   e-149
AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesi...   509   e-145
AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3 | ...   462   e-130
AT1G53500.1 | Symbols: MUM4, RHM2, ATRHM2, ATMUM4 | NAD-dependen...   455   e-128

>AT1G63000.1 | Symbols: NRS/ER, UER1 | nucleotide-rhamnose
           synthase/epimerase-reductase | chr1:23342510-23343859
           FORWARD LENGTH=301
          Length = 301

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 242/284 (85%), Positives = 268/284 (94%)

Query: 15  LKFLIYGRTGWIGGLLGKLCDQQGIPYAYGDGRLENRPSLEADIAAVSPTHVFNAAGVTG 74
             FLIYG+TGWIGGLLGKLC+ QGI Y YG GRL++R S+ ADI +V P+HVFNAAGVTG
Sbjct: 13  FNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPSHVFNAAGVTG 72

Query: 75  RPNVDWCESHKVETIRTNVVGTLTLADVCRQRGLILINYATGCIFEYDSSHPLGSGVGFK 134
           RPNVDWCESHKVETIRTNV GTLTLAD+CR++GL+LINYATGCIFEYDS HPLGSG+GFK
Sbjct: 73  RPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSGHPLGSGIGFK 132

Query: 135 EEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLTNPRNFITKITRYEKVVN 194
           EEDTPNF GSFYSKTKAMVE+LLKNYENVCTLRVRMPISSDLTNPRNFITKI RYEKVV+
Sbjct: 133 EEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFITKIARYEKVVD 192

Query: 195 IPNSMTILDELIPISIEMAKRNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLE 254
           IPNSMTILDEL+PISIEMAKRNLTGI+NFT+PGVVSHNEILEMYRDY+DP+FT+KNFTLE
Sbjct: 193 IPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLE 252

Query: 255 EQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVFDPNHK 298
           EQAKVIVAPRSNNELDA+KLK EFP+L+SIK+SLIK+VF+PN K
Sbjct: 253 EQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKK 296


>AT1G78570.1 | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1
           | chr1:29550110-29552207 FORWARD LENGTH=669
          Length = 669

 Score =  509 bits (1312), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/297 (79%), Positives = 264/297 (88%)

Query: 3   SEANNGDQNQNQLKFLIYGRTGWIGGLLGKLCDQQGIPYAYGDGRLENRPSLEADIAAVS 62
           S+ +NG   +  LKFLIYG+TGWIGGLLGK+CD+QGI Y YG GRLE+R SL  DI +V 
Sbjct: 373 SQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVK 432

Query: 63  PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQRGLILINYATGCIFEYD 122
           PTHVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD
Sbjct: 433 PTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYD 492

Query: 123 SSHPLGSGVGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLTNPRNF 182
             HP GSG+GFKEEDTPNF GSFYSKTKAMVE+LLK Y+NVCTLRVRMPISSDL NPRNF
Sbjct: 493 DKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNF 552

Query: 183 ITKITRYEKVVNIPNSMTILDELIPISIEMAKRNLTGIWNFTSPGVVSHNEILEMYRDYV 242
           ITKI+RY KVVNIPNSMT+LDEL+PISIEMAKRNL GIWNFT+PGVVSHNEILEMYRDY+
Sbjct: 553 ITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYI 612

Query: 243 DPNFTYKNFTLEEQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVFDPNHKV 299
           +P F + NFTLEEQAKVIVAPRSNNE+DASKLKKEFP+LLSIK+SLIKY + PN K 
Sbjct: 613 NPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669


>AT3G14790.1 | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3 |
           chr3:4964791-4966875 FORWARD LENGTH=664
          Length = 664

 Score =  462 bits (1190), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/289 (77%), Positives = 261/289 (90%)

Query: 11  NQNQLKFLIYGRTGWIGGLLGKLCDQQGIPYAYGDGRLENRPSLEADIAAVSPTHVFNAA 70
           ++  LKFLIYG+TGW+GGLLGKLC++QGIPY YG GRLE+R SL ADI ++ P+HVFNAA
Sbjct: 376 DKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAA 435

Query: 71  GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQRGLILINYATGCIFEYDSSHPLGSG 130
           G+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD++HP GSG
Sbjct: 436 GLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHPEGSG 495

Query: 131 VGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLTNPRNFITKITRYE 190
           +GFKEED PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL NPRNFITKI+RY 
Sbjct: 496 IGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYN 555

Query: 191 KVVNIPNSMTILDELIPISIEMAKRNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKN 250
           KVVNIPNSMTILDEL+PISIEMAKRNL GIWNFT+PGVVSHNEILEMY+ Y++P+F + N
Sbjct: 556 KVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSN 615

Query: 251 FTLEEQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVFDPNHKV 299
           F LEEQAKVIVAPRSNNE+D +KL KEFP++LSIKDSLIKYVF+PN + 
Sbjct: 616 FNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664


>AT1G53500.1 | Symbols: MUM4, RHM2, ATRHM2, ATMUM4 | NAD-dependent
           epimerase/dehydratase family protein |
           chr1:19967157-19969239 REVERSE LENGTH=667
          Length = 667

 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/293 (76%), Positives = 263/293 (89%), Gaps = 1/293 (0%)

Query: 7   NGDQ-NQNQLKFLIYGRTGWIGGLLGKLCDQQGIPYAYGDGRLENRPSLEADIAAVSPTH 65
           NGD  ++  LKFLIYG+TGW+GGLLGKLC++QGI Y YG GRLE+R SL ADI ++ PTH
Sbjct: 374 NGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTH 433

Query: 66  VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQRGLILINYATGCIFEYDSSH 125
           VFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+  L+++N+ATGCIFEYD++H
Sbjct: 434 VFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDATH 493

Query: 126 PLGSGVGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLTNPRNFITK 185
           P GSG+GFKEED PNF GSFYSKTKAMVE+LL+ ++NVCTLRVRMPISSDL NPRNFITK
Sbjct: 494 PEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITK 553

Query: 186 ITRYEKVVNIPNSMTILDELIPISIEMAKRNLTGIWNFTSPGVVSHNEILEMYRDYVDPN 245
           I+RY KVV+IPNSMT+LDEL+PISIEMAKRNL GIWNFT+PGVVSHNEILEMY++Y++P 
Sbjct: 554 ISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPG 613

Query: 246 FTYKNFTLEEQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVFDPNHK 298
           F + NFT+EEQAKVIVA RSNNE+D SKL KEFP++LSIK+SL+KYVF+PN +
Sbjct: 614 FKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKR 666