Miyakogusa Predicted Gene
- Lj2g3v2003030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v2003030.1 tr|Q00X22|Q00X22_OSTTA Senescence-inducible
chloroplast stay-green protein (ISS) OS=Ostreococcus
tau,33.33,1e-18,FAMILY NOT NAMED,NULL; seg,NULL; Staygreen,Staygreen
protein,NODE_47131_length_1379_cov_64.810730.path1.1
(265 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:120... 325 2e-89
AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unknow... 306 1e-83
AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 294 4e-80
AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 186 1e-47
>AT4G22920.1 | Symbols: ATNYE1, NYE1 | non-yellowing 1 |
chr4:12016776-12017969 REVERSE LENGTH=268
Length = 268
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/210 (75%), Positives = 178/210 (84%), Gaps = 4/210 (1%)
Query: 1 MGTLTTAPVLTSKFKPSSLSPQEKLS----FFPHRRRFGKKNQAIVPVARLFGPAIFEAS 56
M +L+ +L +K KP+ + S F + RR KKNQ+IVPVARLFGPAIFE+S
Sbjct: 1 MCSLSAIMLLPTKLKPAYSDKRSNSSSSSSLFFNNRRSKKKNQSIVPVARLFGPAIFESS 60
Query: 57 KLKVLFLGVDENKHPGNLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVA 116
KLKVLFLGVDE KHP LPRTYTLTHSDIT+KLTLAISQ+INNSQLQGW N+L RDEVVA
Sbjct: 61 KLKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANRLYRDEVVA 120
Query: 117 QWKKMKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLLNNYPEL 176
+WKK+KGKMSLHVHCHISGGHFLLD+FA+ RYFIFCKELPVVLKAFVHGDGNLLNNYPEL
Sbjct: 121 EWKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFVHGDGNLLNNYPEL 180
Query: 177 QDALVWVYFHSKIPEFNKVQCWGPLKEAAA 206
Q+ALVWVYFHS + EFNKV+CWGPL EA +
Sbjct: 181 QEALVWVYFHSNVNEFNKVECWGPLWEAVS 210
>AT4G11910.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana
protein match is: non-yellowing 1 (TAIR:AT4G22920.1);
Has 206 Blast hits to 202 proteins in 67 species: Archae
- 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants -
118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink). | chr4:7156435-7157839 FORWARD LENGTH=271
Length = 271
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/206 (72%), Positives = 168/206 (81%)
Query: 1 MGTLTTAPVLTSKFKPSSLSPQEKLSFFPHRRRFGKKNQAIVPVARLFGPAIFEASKLKV 60
M +L T +L SK KP S RR KN++IVPVARLFGPAIFEASKLKV
Sbjct: 1 MCSLATNLLLPSKMKPVFPEKLSTSSLCVTTRRSKMKNRSIVPVARLFGPAIFEASKLKV 60
Query: 61 LFLGVDENKHPGNLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVAQWKK 120
LFLGVDE KHP LPRTYTLTHSDIT+KLTLAISQ+INNSQLQGW NKL RDEVV +WKK
Sbjct: 61 LFLGVDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQGWANKLFRDEVVGEWKK 120
Query: 121 MKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLLNNYPELQDAL 180
+KGKMSLHVHCHISGGHF L++ A+LRY+IFCKELPVVL+AF HGD LLNN+PELQ++
Sbjct: 121 VKGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFAHGDEYLLNNHPELQESP 180
Query: 181 VWVYFHSKIPEFNKVQCWGPLKEAAA 206
VWVYFHS IPE+NKV+CWGPL EA +
Sbjct: 181 VWVYFHSNIPEYNKVECWGPLWEAMS 206
>AT4G11911.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT4G11910.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:7158150-7159440 FORWARD LENGTH=273
Length = 273
Score = 294 bits (752), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 143/207 (69%), Positives = 164/207 (79%), Gaps = 2/207 (0%)
Query: 1 MGTLTTAPVLTSKFKPSSLSPQEKLSFFPHRRRFGK-KNQAIVPVARLFGPAIFEASKLK 59
M +L + +L + KP S +E+ S P R K K Q++ PVARLFG AIFEASKL
Sbjct: 1 MCSLMASLLLPANLKPD-FSDKERSSSIPSTTRSSKRKKQSMFPVARLFGQAIFEASKLN 59
Query: 60 VLFLGVDENKHPGNLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNKLQRDEVVAQWK 119
V FLGVDE KHP NLPRTYT THSDIT+KLTLAIS +INNSQLQGW N+L RDEVVA+W+
Sbjct: 60 VKFLGVDEKKHPPNLPRTYTFTHSDITAKLTLAISHSINNSQLQGWANRLYRDEVVAEWR 119
Query: 120 KMKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLLNNYPELQDA 179
K+K MSLHVHCHISG HFLLD+ A LRYFIFCKELP+VLKAFVHGD N+LNNYPEL +A
Sbjct: 120 KVKSNMSLHVHCHISGDHFLLDLIAELRYFIFCKELPMVLKAFVHGDENMLNNYPELHEA 179
Query: 180 LVWVYFHSKIPEFNKVQCWGPLKEAAA 206
VWVYFHS IP+FNKV+CWG L EA +
Sbjct: 180 FVWVYFHSNIPKFNKVECWGRLCEATS 206
>AT1G44000.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins
in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0;
Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:16708201-16709521 REVERSE
LENGTH=260
Length = 260
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 118/172 (68%), Gaps = 7/172 (4%)
Query: 38 NQAIVPVARLFGP-AIFEASKLKVLFLG-VDENKHPGNL--PRTYTLTHSDITSKLTLAI 93
N + RL P A F++SKLKV FLG + ENK G + PRTY L+H D T+ LTL I
Sbjct: 57 NTLVSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTI 116
Query: 94 SQTINNSQLQGWYNKLQRDEVVAQWKKMKGKMSLHVHCHISGGHFLLDIFARLRYFIFCK 153
S IN QL+GWY K D+VVA+WKK+ ++ LH+HC +SG L D+ A LRY IF K
Sbjct: 117 SNVINLDQLEGWYKK---DDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSK 173
Query: 154 ELPVVLKAFVHGDGNLLNNYPELQDALVWVYFHSKIPEFNKVQCWGPLKEAA 205
ELP+VLKA VHGD + PEL DA VWVYFHS P++N+++CWGPLK+AA
Sbjct: 174 ELPLVLKAVVHGDSVMFRENPELMDAYVWVYFHSSTPKYNRIECWGPLKDAA 225