Miyakogusa Predicted Gene

Lj2g3v2002960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002960.1 Non Chatacterized Hit- tr|E1ZNF2|E1ZNF2_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.46,0.0000000001,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.38400.1
         (154 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157...   265   7e-72
AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157...   265   7e-72
AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157...   265   8e-72
AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157...   265   8e-72
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157...   265   8e-72
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71777...   253   5e-68
AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71776...   251   1e-67
AT5G59400.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    47   4e-06
AT5G59400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    47   5e-06

>AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
           chr4:12007157-12009175 FORWARD LENGTH=322
          Length = 322

 Score =  265 bits (678), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           ++GS+IV+EGPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI  +
Sbjct: 169 IDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYI 228

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEPYSFI TWFAAVP IV+LA SIT  II DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 229 MELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSIS 288

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG  TN VKC NCGTAMVYDS +RLITLPEGS A
Sbjct: 289 SGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 322


>AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
           chr4:12007157-12009175 FORWARD LENGTH=321
          Length = 321

 Score =  265 bits (678), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           ++GS+IV+EGPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI  +
Sbjct: 168 IDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYI 227

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEPYSFI TWFAAVP IV+LA SIT  II DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 228 MELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSIS 287

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG  TN VKC NCGTAMVYDS +RLITLPEGS A
Sbjct: 288 SGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 321


>AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
           chr4:12007157-12009175 FORWARD LENGTH=324
          Length = 324

 Score =  265 bits (678), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           ++GS+IV+EGPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI  +
Sbjct: 171 IDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYI 230

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEPYSFI TWFAAVP IV+LA SIT  II DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 231 MELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSIS 290

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG  TN VKC NCGTAMVYDS +RLITLPEGS A
Sbjct: 291 SGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324


>AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
           chr4:12007157-12009175 FORWARD LENGTH=324
          Length = 324

 Score =  265 bits (678), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           ++GS+IV+EGPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI  +
Sbjct: 171 IDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYI 230

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEPYSFI TWFAAVP IV+LA SIT  II DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 231 MELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSIS 290

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG  TN VKC NCGTAMVYDS +RLITLPEGS A
Sbjct: 291 SGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324


>AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
           chr4:12007157-12009175 FORWARD LENGTH=324
          Length = 324

 Score =  265 bits (678), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 138/154 (89%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           ++GS+IV+EGPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI  +
Sbjct: 171 IDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYI 230

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEPYSFI TWFAAVP IV+LA SIT  II DFLILKGPCPNCGTENTSFFGTILSIS
Sbjct: 231 MELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSIS 290

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           SG  TN VKC NCGTAMVYDS +RLITLPEGS A
Sbjct: 291 SGGKTNTVKCTNCGTAMVYDSGSRLITLPEGSQA 324


>AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177709
           REVERSE LENGTH=313
          Length = 313

 Score =  253 bits (645), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 134/154 (87%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           M+GSEIV EGPRCS+RS+KVYSDL+IDY KMFLLNVPATVVALGLFFFLDD+TGFEI  L
Sbjct: 160 MDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYL 219

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEP+SFI TWFAAVP IV+LA S+T  I+ DFLILKGPCPNCGTEN SFFGTILSI 
Sbjct: 220 LELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIP 279

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           + ++TN VKC  CGT MVYDS +RLITLPEG  A
Sbjct: 280 NDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 313


>AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177612
           REVERSE LENGTH=296
          Length = 296

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/154 (77%), Positives = 134/154 (87%)

Query: 1   MEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSL 60
           M+GSEIV EGPRCS+RS+KVYSDL+IDY KMFLLNVPATVVALGLFFFLDD+TGFEI  L
Sbjct: 143 MDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYL 202

Query: 61  IEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSIS 120
           +E+PEP+SFI TWFAAVP IV+LA S+T  I+ DFLILKGPCPNCGTEN SFFGTILSI 
Sbjct: 203 LELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIP 262

Query: 121 SGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 154
           + ++TN VKC  CGT MVYDS +RLITLPEG  A
Sbjct: 263 NDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 296


>AT5G59400.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: PGR5-like B
           (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:23957756-23959518 FORWARD LENGTH=301
          Length = 301

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 26/154 (16%)

Query: 3   GSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLN--------------VPATVVALGLFFF 48
           GS+ V + PRCS+  +  Y+D   D  ++ LL               V  T+  +GL + 
Sbjct: 108 GSKSVVKYPRCSLLRQSTYADAEDDASQVLLLATVWIMIFLFGSSACVLPTIYGVGLVYG 167

Query: 49  LDD-----VTGFEINSLIEIPEPYSFILTWFAAVPFIVWLAQSITNAII----NDFLILK 99
            D      V   +++S + I   ++ IL       F   +A S    +     ND   LK
Sbjct: 168 GDPFDSGLVYSSQLSSSVPILSKFNGILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALK 227

Query: 100 GPCPNCGTENTSFFGTILSISSGNSTNKVKCVNC 133
           G CPNCG E    F  + S  S  S +K  C  C
Sbjct: 228 GDCPNCGEE---VFAFVRSDQSNRSAHKADCHVC 258


>AT5G59400.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
           thaliana protein match is: PGR5-like B
           (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in
           19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:23957756-23959518 FORWARD
           LENGTH=299
          Length = 299

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 26/154 (16%)

Query: 3   GSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLN--------------VPATVVALGLFFF 48
           GS+ V + PRCS+  +  Y+D   D  ++ LL               V  T+  +GL + 
Sbjct: 108 GSKSVVKYPRCSLLRQSTYADAEDDASQVLLLATVWIMIFLFGSSACVLPTIYGVGLVYG 167

Query: 49  LDD-----VTGFEINSLIEIPEPYSFILTWFAAVPFIVWLAQSITNAII----NDFLILK 99
            D      V   +++S + I   ++ IL       F   +A S    +     ND   LK
Sbjct: 168 GDPFDSGLVYSSQLSSSVPILSKFNGILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALK 227

Query: 100 GPCPNCGTENTSFFGTILSISSGNSTNKVKCVNC 133
           G CPNCG E    F  + S  S  S +K  C  C
Sbjct: 228 GDCPNCGEE---VFAFVRSDQSNRSAHKADCHVC 258