Miyakogusa Predicted Gene

Lj2g3v2002610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002610.1 tr|G7KG67|G7KG67_MEDTR CPD photolyase OS=Medicago
truncatula GN=MTR_5g011780 PE=4 SV=1,80.77,0,FAD_binding_7,DNA
photolyase, FAD-binding/Cryptochrome, C-terminal; DNA_photolyase,DNA
photolyase, N,CUFF.38373.1
         (496 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206500-...   745   0.0  
AT1G12370.1 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206500-...   726   0.0  

>AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 |
           chr1:4206500-4208842 REVERSE LENGTH=496
          Length = 496

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/497 (71%), Positives = 419/497 (84%), Gaps = 13/497 (2%)

Query: 6   SPMSVNPGRIRTLKEGSPRSNGES-GPVVYWMFRDQRVRDNWALIHAVHQANKANVPVAV 64
           S +SV PGRIR LK+GS +   ++ GPVVYWMFRDQR++DNWALIHAV  AN+ N PVAV
Sbjct: 3   STVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAV 62

Query: 65  VFNLFDHFLGAKSRHLGFMLRGLRQLCHQLQHTLQIPFFLFRGEAEETVSKFVRECGASL 124
           VFNLFD FL AK+R LGFML+GLRQL HQ+  +LQIPFFL +G+A+ET+  F+ ECGAS 
Sbjct: 63  VFNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASH 121

Query: 125 LVTDMSPLREVRRCKSEICERVGDSVMVHEVDAHNVVPIWVASDKLEYSARTIRGKINKK 184
           LVTD SPLRE+RRCK E+ +R  DS+ +HEVDAHNVVP+W AS KLEYSARTIRGKINK 
Sbjct: 122 LVTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKL 181

Query: 185 LPEYLTDFPDIEPQSRKWV-VTEDRIIDWDDLIAEVLR-GAEVPEVDWCVPGEIAAMEVL 242
           LP+YL +FP +EP  +KW  + + +++DWD LI +V+R GAEVPE++WCVPGE A +EVL
Sbjct: 182 LPDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVL 241

Query: 243 MGSKNGFLTKRLKSY-LDRNNPCKTTALSGLSPYLHFGQISAQRCALEARKLRTSCPQAA 301
           MG+K+GFLTKRLK+Y  DRNNP K  ALSGLSPYLHFGQ+SAQRCALEARK+R++ PQA 
Sbjct: 242 MGNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAV 301

Query: 302 DAFLEELVVRRELADNFCYYQPQYDSLQGAWDWARKTLLDHAADKREHIYSKEQLEKAQT 361
           D FLEEL+VRREL+DNFCYYQP YDSL+GAW+WARK+L+DHA+DKREHIYS EQLEK  T
Sbjct: 302 DTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLT 361

Query: 362 ADRLWNASQLEMVHFGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNG 421
           AD LWNASQLEMV+ GKMHGFMRMYWAKKILEWT+GPEEAL I IYLN+KYEIDGRDP+G
Sbjct: 362 ADPLWNASQLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSG 421

Query: 422 YCGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVERYIAYVNKVVS-EMKKRKAE 480
           Y GCMWSICGVHDQGW+ERP+FGKIRYMNY GCKRKF+V+ YI+YV  +VS   KKRKAE
Sbjct: 422 YVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKRKAE 481

Query: 481 NLISQKEKLLR-SCDPE 496
                 E+L R S DP+
Sbjct: 482 ------EQLTRDSVDPK 492


>AT1G12370.1 | Symbols: PHR1, UVR2 | photolyase 1 |
           chr1:4206500-4208842 REVERSE LENGTH=490
          Length = 490

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/497 (70%), Positives = 413/497 (83%), Gaps = 19/497 (3%)

Query: 6   SPMSVNPGRIRTLKEGSPRSNGES-GPVVYWMFRDQRVRDNWALIHAVHQANKANVPVAV 64
           S +SV PGRIR LK+GS +   ++ GPVVYWMFRDQR++DNWALIHAV  AN+ N PVAV
Sbjct: 3   STVSVQPGRIRILKKGSWQPLDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAV 62

Query: 65  VFNLFDHFLGAKSRHLGFMLRGLRQLCHQLQHTLQIPFFLFRGEAEETVSKFVRECGASL 124
           VFNLFD FL AK+R LGFML+GLRQL HQ+  +LQIPFFL +G+A+ET+  F+ ECGAS 
Sbjct: 63  VFNLFDQFLDAKARQLGFMLKGLRQLHHQID-SLQIPFFLLQGDAKETIPNFLTECGASH 121

Query: 125 LVTDMSPLREVRRCKSEICERVGDSVMVHEVDAHNVVPIWVASDKLEYSARTIRGKINKK 184
           LVTD SPLRE+RRCK E+ +R  DS+ +HEVDAHNVVP+W AS KLEYSARTIRGKINK 
Sbjct: 122 LVTDFSPLREIRRCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKL 181

Query: 185 LPEYLTDFPDIEPQSRKWV-VTEDRIIDWDDLIAEVLR-GAEVPEVDWCVPGEIAAMEVL 242
           LP+YL +FP +EP  +KW  + + +++DWD LI +V+R GAEVPE++WCVPGE A +EVL
Sbjct: 182 LPDYLIEFPKLEPPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVL 241

Query: 243 MGSKNGFLTKRLKSY-LDRNNPCKTTALSGLSPYLHFGQISAQRCALEARKLRTSCPQAA 301
           MG+K+GFLTKRLK+Y  DRNNP K  ALSGLSPYLHFGQ+SAQRCALEARK+R++ PQA 
Sbjct: 242 MGNKDGFLTKRLKNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEARKVRSTSPQAV 301

Query: 302 DAFLEELVVRRELADNFCYYQPQYDSLQGAWDWARKTLLDHAADKREHIYSKEQLEKAQT 361
           D FLEEL+VRREL+DNFCYYQP YDSL+GAW+WARK+L+DHA+DKREHIYS EQLEK  T
Sbjct: 302 DTFLEELIVRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLT 361

Query: 362 ADRLWNASQLEMVHFGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNG 421
           AD       LEMV+ GKMHGFMRMYWAKKILEWT+GPEEAL I IYLN+KYEIDGRDP+G
Sbjct: 362 AD------PLEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSG 415

Query: 422 YCGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVERYIAYVNKVVS-EMKKRKAE 480
           Y GCMWSICGVHDQGW+ERP+FGKIRYMNY GCKRKF+V+ YI+YV  +VS   KKRKAE
Sbjct: 416 YVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVDSYISYVKSLVSVTKKKRKAE 475

Query: 481 NLISQKEKLLR-SCDPE 496
                 E+L R S DP+
Sbjct: 476 ------EQLTRDSVDPK 486