Miyakogusa Predicted Gene

Lj2g3v2002580.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002580.1 Non Chatacterized Hit- tr|I1LGL4|I1LGL4_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,77.86,0,SUBFAMILY NOT
NAMED,NULL; UNCHARACTERIZED,NULL; Folate-binding domain,NULL;
ygfZ_signature: folate-b,CUFF.38367.1
         (406 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12130.1 | Symbols:  | Glycine cleavage T-protein family | ch...   475   e-134

>AT4G12130.1 | Symbols:  | Glycine cleavage T-protein family |
           chr4:7263640-7265425 FORWARD LENGTH=393
          Length = 393

 Score =  475 bits (1222), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/407 (57%), Positives = 284/407 (69%), Gaps = 15/407 (3%)

Query: 1   MNRLAFPKSFTQRCRAIHQTTSKHSPQTQLHSAGPVASLLKSRSVIRFRGPDTIKFLQGL 60
           M R  F +  ++     H+        + L  AGP+AS LKSRSV+RF GPDT+KFLQGL
Sbjct: 1   MFRFNFRREISKYTGIYHRKI-----HSGLEDAGPMASRLKSRSVVRFSGPDTVKFLQGL 55

Query: 61  LTNDVRRFAEPVGEKTANMPTPNVPAASVPPLYAALLTPQGRFLYDLFLYNPPKVTAKLD 120
           LTNDVRRF E  GEK + +PTPN+ + + PP+YAALLTPQGRFLYD FLY+P +   KLD
Sbjct: 56  LTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAALLTPQGRFLYDFFLYSPSRPDEKLD 115

Query: 121 RTGSGPGSDAA-DEPFDLYADVDSSVLDECLETFIKYRLRSKVEIDDVTNDFSCWQRYGS 179
           RTGSGPGSD+  D   +L+ADVD  VLDE LET  KYRLRSKV+I++V  +FSCWQRYG 
Sbjct: 116 RTGSGPGSDSGRDGSVELFADVDVDVLDELLETLKKYRLRSKVDIENVAEEFSCWQRYGR 175

Query: 180 GPTEKSSHVEEPEAASVGWGAGVDDAAMSSSRGGNLGWQWFKDPRLACLGFRGIFPSNII 239
             T  SS                D A  S++ G   GWQW+KDPRL CLG+R IFPS+  
Sbjct: 176 NLTGSSSVGWGGGV---------DRAGESTASGNKYGWQWYKDPRLECLGYRSIFPSDAT 226

Query: 240 PPLIEADKETDEENYLLWRIEKGVAEGSTEIPKGEAVPLECNLVGLNAISFDKGCYVGQE 299
           PPL+EADKETDE NYLLWR+E GVAEGS EIPKGEA+PLE N VGLNAISFDKGCYVGQE
Sbjct: 227 PPLVEADKETDESNYLLWRLEHGVAEGSAEIPKGEAIPLEYNFVGLNAISFDKGCYVGQE 286

Query: 300 LVARTHHRGVIRKRIVPLRFLDSDGKELLDKVAPGSEVINTASSKKAXXXXXXXXXXXXX 359
           L+ARTHHRGVIRKR++PLRF+DS+GKEL  K+A G+EV+ + + KK              
Sbjct: 287 LIARTHHRGVIRKRLIPLRFIDSNGKELNQKIAAGAEVVESGTGKKMGTVSTALGSRGMG 346

Query: 360 XXXXEEAFKGSSALSIQGQEDVKVVASKPDWWPSDWLQDHQQHTAFA 406
               EEAFK S+ L+++  E+VKV A KP WWP++W Q +Q   A A
Sbjct: 347 VMRVEEAFKPSAELAVKDSEEVKVEAIKPTWWPAEWFQQNQSGVAAA 393