Miyakogusa Predicted Gene

Lj2g3v2002410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002410.1 tr|A4RQP9|A4RQP9_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_39676,34.12,2e-17,seg,NULL; coiled-coil,NULL,CUFF.38378.1
         (242 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62780.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   298   2e-81

>AT1G62780.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast,
           chloroplast stroma; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to
           94 proteins in 35 species: Archae - 6; Bacteria - 10;
           Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other
           Eukaryotes - 7 (source: NCBI BLink). |
           chr1:23249349-23251066 REVERSE LENGTH=237
          Length = 237

 Score =  298 bits (763), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 184/244 (75%), Gaps = 9/244 (3%)

Query: 1   MAALSFGXXXXXXXXXXXXXYRVSPR--NRKSTISCIGWDPEGVLSPPQGGHLARLEFKK 58
           MA LSFG              R  PR  +R+S I+C  WDP+GVL P Q GH+ARLEFK+
Sbjct: 1   MATLSFGIAAAATT------VRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKR 53

Query: 59  SLEKDADAREAFXXXXXXXXXXXXAFRQSRVVPDSPQELIEYLLDTEAQDIEFEISRTRP 118
            LE+D++AREAF            A RQSRVVPD+  ELIEY LDTEAQ+IE+EI+R R 
Sbjct: 54  RLERDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRG 113

Query: 119 RLNEEFFAHLKFELGQLRFAVNKTQDVEDRLIELEALEKAIQEGTEAYDKMQTELIKAKE 178
           RLN+EFFA ++ E+GQ+RFAV KT D+EDRLIELE L+KA++EG EAYDKMQ EL+ A  
Sbjct: 114 RLNDEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATN 173

Query: 179 SLTTILTSKDVKATLLEMVERNELNRSLLALLDENITSAHQGNQKQAAEYMEKLRGAVLK 238
           SLT +LTS D+K TLL+MVE+N++NRSLLALLDENI +A++GNQK+A +YMEK+R +VLK
Sbjct: 174 SLTKLLTSTDIKTTLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEKIRSSVLK 233

Query: 239 YITV 242
           Y+TV
Sbjct: 234 YLTV 237