Miyakogusa Predicted Gene

Lj2g3v2002340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002340.1 Non Chatacterized Hit- tr|C5Z239|C5Z239_SORBI
Putative uncharacterized protein Sb10g000460
OS=Sorghu,36.95,4e-18,seg,NULL,CUFF.38348.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12260.1 | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 ...    91   4e-19
AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain co...    70   1e-12

>AT1G12260.1 | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 |
           chr1:4163058-4164486 REVERSE LENGTH=395
          Length = 395

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 102/238 (42%), Gaps = 46/238 (19%)

Query: 3   TTIRKMGDYGSP--CWYDDQVSFM-QELES-------PNXXXX-------------XXXX 39
             +R+MGDY S    WYDDQ+SFM  ELE+       PN                     
Sbjct: 159 AAVRRMGDYDSSPSHWYDDQLSFMASELETNGQRRILPNHHQQQQHEHQQHMPYGLNASA 218

Query: 40  XXXXXXXXPCKQELEMQYN--------VTRTHDAFLQLPQLESPKLLQS--------YGY 83
                    CKQELE+ YN        +  +H +FLQLPQLESPK+ Q         YG 
Sbjct: 219 YALNNPNLQCKQELELHYNHLVQRNHLLDESHLSFLQLPQLESPKIQQDNSNCNSLPYGT 278

Query: 84  DHXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXYGSNN--DQVTDWRVLDKFVASQ 141
            +                                    G+    DQVTDWRVLDKFVASQ
Sbjct: 279 SNIDNNSSHNANLQQSNIAHEEQLNQGNQNFSSLYMNSGNEQVMDQVTDWRVLDKFVASQ 338

Query: 142 LSHEQHASKDETSYSNVAEDQEQFTLLPNGSEKP----EINQKYASTTTSSCQIDPWK 195
           LS+E+ A+    S  N A+D        +  + P    ++ ++Y ++T+SSCQID WK
Sbjct: 339 LSNEEAATA-SASIQNNAKDTSNAEYQVDEEKDPKRASDMGEEYTASTSSSCQIDLWK 395


>AT1G62700.1 | Symbols: VND5, ANAC026 | Arabidopsis NAC domain
           containing protein 26 | chr1:23216218-23217916 REVERSE
           LENGTH=394
          Length = 394

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 97/240 (40%), Gaps = 52/240 (21%)

Query: 1   MPTTIRKMGDY-GSPC--WYDDQVSFM-QELES-------PNXXXXXXXXXXX------- 42
           +  T+RKMGDY  SP   WYDDQ+SFM  E+ S       PN                  
Sbjct: 158 LAATVRKMGDYHSSPSQHWYDDQLSFMASEIISSSPRQFLPNHHYNRHHHQQTLPCGLNA 217

Query: 43  ---XXXXXPCKQELEMQYNVTRTH---------DAFLQLPQLESPKLLQSYGYDHXXXXX 90
                    CKQELE+ YN    H           FLQLPQLESP    +   +      
Sbjct: 218 FNNNNPNLQCKQELELHYNQMVQHQQQNHHLRESMFLQLPQLESP----TSNCNSDNNNN 273

Query: 91  XXXXXXXXXXXPXXXXXXXXXXXXXXXXXXYGSNNDQVT-DWRVLDKFVASQLSHEQHAS 149
                                         Y    +Q+T DWRVLDKFVASQLS+++ A+
Sbjct: 274 TRNISNLQKSSNISHEEQLQQGNQSFSSLYYDQGVEQMTTDWRVLDKFVASQLSNDEEAA 333

Query: 150 KDETSYS---NVAED---------QEQFTLLPNGSEK-----PEINQKYASTTTSSCQID 192
              +S S   NV  D          E   L  N SE+      E +  +A++T+SSCQID
Sbjct: 334 AVVSSSSHQNNVKIDTRNTGYHVIDEGINLPENDSERVVEMGEEYSNAHAASTSSSCQID 393