Miyakogusa Predicted Gene

Lj2g3v2002320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002320.1 tr|Q2JIY2|Q2JIY2_SYNJB Pentapeptide repeat family
protein OS=Synechococcus sp. (strain
JA-2-3B'a(2-1,41.54,1e-18,Pentapeptide_4,NULL; seg,NULL; Pentapeptide
repeat-like,NULL; UNCHARACTERIZED,NULL,CUFF.38345.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12250.2 | Symbols:  | Pentapeptide repeat-containing protein...   292   1e-79
AT1G12250.1 | Symbols:  | Pentapeptide repeat-containing protein...   286   1e-77
AT2G44920.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   4e-10
AT5G53490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   3e-08
AT5G53490.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   4e-07
AT5G53490.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   8e-07

>AT1G12250.2 | Symbols:  | Pentapeptide repeat-containing protein |
           chr1:4159623-4161269 FORWARD LENGTH=206
          Length = 206

 Score =  292 bits (748), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/168 (85%), Positives = 156/168 (92%)

Query: 92  LAAAVIAFSSDMSALADLNKFEAEIRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSA 151
           +AAAVIA SS + A+A+LN+FEA+ RGEFGIGSAAQ+GSADL K VH NENFRRANFTSA
Sbjct: 1   MAAAVIASSSGVPAMAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTSA 60

Query: 152 DMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILVRTVLTRS 211
           DMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNA+LVR+VLTRS
Sbjct: 61  DMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTRS 120

Query: 212 DLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGCGN 259
           DLGG+ IEGADFSDAV+DL QK ALCKYA+GTNP+TGV TR SLGCGN
Sbjct: 121 DLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGCGN 168


>AT1G12250.1 | Symbols:  | Pentapeptide repeat-containing protein |
           chr1:4159287-4161269 FORWARD LENGTH=280
          Length = 280

 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 148/180 (82%), Positives = 164/180 (91%)

Query: 80  ESKKWGKLVSATLAAAVIAFSSDMSALADLNKFEAEIRGEFGIGSAAQFGSADLRKAVHV 139
           ES  W +++SA +AAAVIA SS + A+A+LN+FEA+ RGEFGIGSAAQ+GSADL K VH 
Sbjct: 63  ESNTWKRILSAAMAAAVIASSSGVPAMAELNRFEADTRGEFGIGSAAQYGSADLSKTVHS 122

Query: 140 NENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLT 199
           NENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLT
Sbjct: 123 NENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLT 182

Query: 200 NAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGCGN 259
           NA+LVR+VLTRSDLGG+ IEGADFSDAV+DL QK ALCKYA+GTNP+TGV TR SLGCGN
Sbjct: 183 NAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGCGN 242


>AT2G44920.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:18524419-18526502 FORWARD
           LENGTH=224
          Length = 224

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 1/127 (0%)

Query: 132 DLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRM 191
           DL       +   R +F ++ +R+++F G+   GA    A    A+ S ADL        
Sbjct: 97  DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLA 156

Query: 192 VLNEANLTNAILV-RTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVS 250
            + + NLTNA L   TV   +   GS I GADF+D  L   Q++ LCK A G N  TG +
Sbjct: 157 NVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNA 216

Query: 251 TRVSLGC 257
           TR +L C
Sbjct: 217 TRDTLLC 223


>AT5G53490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:21723488-21724621 REVERSE
           LENGTH=236
          Length = 236

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 23/223 (10%)

Query: 53  LSNSLHFHPKSSPIVLCQMNSNRDHPQESKK-------WGKLVSA-------TLAAAVIA 98
            S +L   P+S   V C    NR++ +  KK        G +  A       T+A+ VIA
Sbjct: 18  FSVNLRREPRSLVTVHCSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIA 77

Query: 99  FSSDMSALA-DLNKFEAEIRGE-FGIGSAAQFGSADLRKAVHVNE--NFRRANFTSADMR 154
            +  +  L+ + ++ E    G   G  +       DLR   + N+  N +    ++A M 
Sbjct: 78  ANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMV 137

Query: 155 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILVRTVLTRSDLG 214
            + F G+      + KA A +A+F G + ++ ++DR+   ++NL  A+   TVL+ S   
Sbjct: 138 GAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFE 197

Query: 215 GSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGC 257
            + +E   F D ++       +C+     N       R+ LGC
Sbjct: 198 EANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235


>AT5G53490.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:21723488-21724621 REVERSE
           LENGTH=235
          Length = 235

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 24/223 (10%)

Query: 53  LSNSLHFHPKSSPIVLCQMNSNRDHPQESKK-------WGKLVSA-------TLAAAVIA 98
            S +L   P+S   V C    NR++ +  KK        G +  A       T+A+ VIA
Sbjct: 18  FSVNLRREPRSLVTVHCS-GENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIA 76

Query: 99  FSSDMSALA-DLNKFEAEIRGE-FGIGSAAQFGSADLRKAVHVNE--NFRRANFTSADMR 154
            +  +  L+ + ++ E    G   G  +       DLR   + N+  N +    ++A M 
Sbjct: 77  ANQRLPPLSTEPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMV 136

Query: 155 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILVRTVLTRSDLG 214
            + F G+      + KA A +A+F G + ++ ++DR+   ++NL  A+   TVL+ S   
Sbjct: 137 GAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFE 196

Query: 215 GSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGVSTRVSLGC 257
            + +E   F D ++       +C+     N       R+ LGC
Sbjct: 197 EANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 234


>AT5G53490.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:21723488-21724621 REVERSE
           LENGTH=250
          Length = 250

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 26/213 (12%)

Query: 66  IVLCQMNS---NRDHPQESKK-------WGKLVSA-------TLAAAVIAFSSDMSALA- 107
           I++C M S   NR++ +  KK        G +  A       T+A+ VIA +  +  L+ 
Sbjct: 42  ILICIMFSAGENRENGEGVKKSLFPLKELGSIACAALCACTLTIASPVIAANQRLPPLST 101

Query: 108 DLNKFEAEIRGE-FGIGSAAQFGSADLRKAVHVNE--NFRRANFTSADMRESDFSGSTFN 164
           + ++ E    G   G  +       DLR   + N+  N +    ++A M  + F G+   
Sbjct: 102 EPDRCEKAFVGNTIGQANGVYDKPLDLRFCDYTNDQTNLKGKTLSAALMVGAKFDGADMT 161

Query: 165 GAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAILVRTVLTRSDLGGSIIEGADFS 224
              + KA A +A+F G + ++ ++DR+   ++NL  A+   TVL+ S    + +E   F 
Sbjct: 162 EVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFE 221

Query: 225 DAVLDLTQKLALCKYASGTNPVTGVSTRVSLGC 257
           D ++       +C+     N       R+ LGC
Sbjct: 222 DTIIGYIDLQKICR-----NESINEEGRLVLGC 249