Miyakogusa Predicted Gene

Lj2g3v2002110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2002110.1 Non Chatacterized Hit- tr|I3SEQ0|I3SEQ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.85,8.40779e-45,Motile_Sperm,Major sperm protein; no
description,PapD-like; VESICLE-ASSOCIATED MEMBRANE
PROTEIN-ASSO,NODE_60318_length_361_cov_171.036011.path2.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle as...   150   2e-37
AT3G60600.3 | Symbols: VAP27-1 | vesicle associated protein | ch...   149   5e-37
AT3G60600.2 | Symbols: VAP27-1 | vesicle associated protein | ch...   148   8e-37
AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611...   143   3e-35
AT4G00170.1 | Symbols:  | Plant VAMP (vesicle-associated membran...   141   7e-35
AT1G51270.4 | Symbols:  | structural molecules;transmembrane rec...   123   3e-29
AT2G23830.1 | Symbols:  | PapD-like superfamily protein | chr2:1...   123   3e-29
AT1G51270.2 | Symbols:  | structural molecules;transmembrane rec...   121   8e-29
AT1G51270.1 | Symbols:  | structural molecules;transmembrane rec...   121   9e-29
AT1G51270.3 | Symbols:  | structural molecules;transmembrane rec...   121   9e-29
AT5G47180.2 | Symbols:  | Plant VAMP (vesicle-associated membran...   121   1e-28
AT5G47180.1 | Symbols:  | Plant VAMP (vesicle-associated membran...   121   1e-28
AT1G08820.2 | Symbols: VAP27-2 | vamp/synaptobrevin-associated p...   120   1e-28
AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated p...   120   1e-28
AT4G21450.2 | Symbols:  | PapD-like superfamily protein | chr4:1...    46   4e-06

>AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle
           associated protein | chr3:22400537-22402408 FORWARD
           LENGTH=256
          Length = 256

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 79/88 (89%)

Query: 1   MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
           MS  +LL ++PL+L+F FELKKQISCSL L+N+TD  VAFKVKTTNPKKYCVRPNTGVVL
Sbjct: 17  MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query: 61  PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
           PRSTC+V VTMQAQKEAP DMQCKDKFL
Sbjct: 77  PRSTCEVLVTMQAQKEAPSDMQCKDKFL 104


>AT3G60600.3 | Symbols: VAP27-1 | vesicle associated protein |
           chr3:22400537-22401669 FORWARD LENGTH=230
          Length = 230

 Score =  149 bits (375), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 79/88 (89%)

Query: 1   MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
           MS  +LL ++PL+L+F FELKKQISCSL L+N+TD  VAFKVKTTNPKKYCVRPNTGVVL
Sbjct: 17  MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query: 61  PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
           PRSTC+V VTMQAQKEAP DMQCKDKFL
Sbjct: 77  PRSTCEVLVTMQAQKEAPSDMQCKDKFL 104


>AT3G60600.2 | Symbols: VAP27-1 | vesicle associated protein |
           chr3:22400537-22401650 FORWARD LENGTH=217
          Length = 217

 Score =  148 bits (373), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 79/88 (89%)

Query: 1   MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
           MS  +LL ++PL+L+F FELKKQISCSL L+N+TD  VAFKVKTTNPKKYCVRPNTGVVL
Sbjct: 17  MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query: 61  PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
           PRSTC+V VTMQAQKEAP DMQCKDKFL
Sbjct: 77  PRSTCEVLVTMQAQKEAPSDMQCKDKFL 104


>AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 |
          chr2:18611029-18612971 FORWARD LENGTH=239
          Length = 239

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 76/86 (88%)

Query: 3  TGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPR 62
          + +LL IDP++L+F FELKKQISCSL L N+TD YVAFKVKTTNPKKYCVRPNTGVV PR
Sbjct: 2  SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61

Query: 63 STCDVTVTMQAQKEAPPDMQCKDKFL 88
          S+ +V VTMQAQKEAP D+QCKDKFL
Sbjct: 62 SSSEVLVTMQAQKEAPADLQCKDKFL 87


>AT4G00170.1 | Symbols:  | Plant VAMP (vesicle-associated membrane
          protein) family protein | chr4:70732-72085 REVERSE
          LENGTH=239
          Length = 239

 Score =  141 bits (356), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 79/89 (88%), Gaps = 1/89 (1%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTD-EYVAFKVKTTNPKKYCVRPNTGVV 59
          M+TGDL++I P ELKF FELKKQ SCS+QL+N+T  + VAFKVKTTNP+KYCVRPNTGVV
Sbjct: 1  MTTGDLVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVV 60

Query: 60 LPRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          LP  +C+VTVTMQAQKEAP DMQCKDKFL
Sbjct: 61 LPGDSCNVTVTMQAQKEAPLDMQCKDKFL 89


>AT1G51270.4 | Symbols:  | structural molecules;transmembrane
          receptors;structural molecules | chr1:19007577-19011225
          FORWARD LENGTH=467
          Length = 467

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 70/88 (79%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
          MST +LL  D ++++F  EL K++SCSL L+N+T+ YVAFK KTTN KKY VRPN GVVL
Sbjct: 1  MSTDELLTFDHVDIRFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVL 60

Query: 61 PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          PRS+C+V V MQA KEAP DMQC+DK L
Sbjct: 61 PRSSCEVLVIMQALKEAPADMQCRDKLL 88


>AT2G23830.1 | Symbols:  | PapD-like superfamily protein |
          chr2:10143646-10144511 FORWARD LENGTH=149
          Length = 149

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 70/88 (79%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
          MS  +LL I+P+ L+F FELKKQ+SCSL L+N+TD  VAFKVKTTN   YCVRPN G++L
Sbjct: 1  MSNNELLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLIL 60

Query: 61 PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          P+STC V VTMQAQKE P DMQ  +KF+
Sbjct: 61 PKSTCKVLVTMQAQKEVPSDMQSFEKFM 88


>AT1G51270.2 | Symbols:  | structural molecules;transmembrane
           receptors;structural molecules | chr1:19007577-19010496
           FORWARD LENGTH=531
          Length = 531

 Score =  121 bits (304), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 3   TGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPR 62
           + +LL IDP++++F  EL K++SCSL L+N+T+ YVAFK KTTN KKY VRPN GVVLPR
Sbjct: 173 SDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPR 232

Query: 63  STCDVTVTMQAQKEAPPDMQCKDKFL 88
           S+C+V V MQA KEAP DMQC+DK L
Sbjct: 233 SSCEVLVIMQALKEAPADMQCRDKLL 258



 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 68/88 (77%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
          MST +LL  D ++++F  EL KQ SCSL L+N+TD YVAFK +TT PK YCV+P+ GVVL
Sbjct: 1  MSTDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVL 60

Query: 61 PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          PRS+C+V V MQA KEAP D QCKDK L
Sbjct: 61 PRSSCEVLVVMQALKEAPADRQCKDKLL 88


>AT1G51270.1 | Symbols:  | structural molecules;transmembrane
           receptors;structural molecules | chr1:19007577-19010411
           FORWARD LENGTH=571
          Length = 571

 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 3   TGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPR 62
           + +LL IDP++++F  EL K++SCSL L+N+T+ YVAFK KTTN KKY VRPN GVVLPR
Sbjct: 173 SDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPR 232

Query: 63  STCDVTVTMQAQKEAPPDMQCKDKFL 88
           S+C+V V MQA KEAP DMQC+DK L
Sbjct: 233 SSCEVLVIMQALKEAPADMQCRDKLL 258



 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 68/88 (77%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
          MST +LL  D ++++F  EL KQ SCSL L+N+TD YVAFK +TT PK YCV+P+ GVVL
Sbjct: 1  MSTDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVL 60

Query: 61 PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          PRS+C+V V MQA KEAP D QCKDK L
Sbjct: 61 PRSSCEVLVVMQALKEAPADRQCKDKLL 88


>AT1G51270.3 | Symbols:  | structural molecules;transmembrane
           receptors;structural molecules | chr1:19007577-19011225
           FORWARD LENGTH=637
          Length = 637

 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 3   TGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPR 62
           + +LL IDP++++F  EL K++SCSL L+N+T+ YVAFK KTTN KKY VRPN GVVLPR
Sbjct: 173 SDELLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPR 232

Query: 63  STCDVTVTMQAQKEAPPDMQCKDKFL 88
           S+C+V V MQA KEAP DMQC+DK L
Sbjct: 233 SSCEVLVIMQALKEAPADMQCRDKLL 258



 Score =  118 bits (296), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 68/88 (77%)

Query: 1  MSTGDLLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVL 60
          MST +LL  D ++++F  EL KQ SCSL L+N+TD YVAFK +TT PK YCV+P+ GVVL
Sbjct: 1  MSTDELLTFDHVDIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVL 60

Query: 61 PRSTCDVTVTMQAQKEAPPDMQCKDKFL 88
          PRS+C+V V MQA KEAP D QCKDK L
Sbjct: 61 PRSSCEVLVVMQALKEAPADRQCKDKLL 88


>AT5G47180.2 | Symbols:  | Plant VAMP (vesicle-associated membrane
          protein) family protein | chr5:19161384-19163265
          REVERSE LENGTH=220
          Length = 220

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 6  LLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPRSTC 65
          L+ I P ELKF+FEL+KQ  C L+++N+T+ YVAFKVKTT+PKKY VRPNTGV+ P  +C
Sbjct: 9  LISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSC 68

Query: 66 DVTVTMQAQKEAPPDMQCKDKFL 88
           + VT+QAQ+E PPDMQCKDKFL
Sbjct: 69 IIRVTLQAQREYPPDMQCKDKFL 91


>AT5G47180.1 | Symbols:  | Plant VAMP (vesicle-associated membrane
          protein) family protein | chr5:19161384-19163265
          REVERSE LENGTH=220
          Length = 220

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 69/83 (83%)

Query: 6  LLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPRSTC 65
          L+ I P ELKF+FEL+KQ  C L+++N+T+ YVAFKVKTT+PKKY VRPNTGV+ P  +C
Sbjct: 9  LISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSC 68

Query: 66 DVTVTMQAQKEAPPDMQCKDKFL 88
           + VT+QAQ+E PPDMQCKDKFL
Sbjct: 69 IIRVTLQAQREYPPDMQCKDKFL 91


>AT1G08820.2 | Symbols: VAP27-2 | vamp/synaptobrevin-associated
          protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386
          Length = 386

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 65/83 (78%)

Query: 6  LLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPRSTC 65
          LL I P  L+F  +LKKQ SC +QL+N T  YVAFKVKTT+PKKYCVRPN GVV P+STC
Sbjct: 5  LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64

Query: 66 DVTVTMQAQKEAPPDMQCKDKFL 88
          + TV MQA KE PPDM CKDKFL
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFL 87


>AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated
          protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386
          Length = 386

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 65/83 (78%)

Query: 6  LLHIDPLELKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVVLPRSTC 65
          LL I P  L+F  +LKKQ SC +QL+N T  YVAFKVKTT+PKKYCVRPN GVV P+STC
Sbjct: 5  LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64

Query: 66 DVTVTMQAQKEAPPDMQCKDKFL 88
          + TV MQA KE PPDM CKDKFL
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFL 87


>AT4G21450.2 | Symbols:  | PapD-like superfamily protein |
           chr4:11426136-11427439 FORWARD LENGTH=212
          Length = 212

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 1   MSTGDLLHIDPLE-LKFIFELKKQISCSLQLSNQTDEYVAFKVKTTNPKKYCVRPNTGVV 59
           + T   L +DP E L F +E  KQ+  ++++ N +  +VAFK +TT PK   +RP   ++
Sbjct: 102 LPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSCFMRPPGAIL 161

Query: 60  LPRSTCDVT----VTMQAQKEAPPDMQCKDKF 87
            P  T   T    V      E P D + + KF
Sbjct: 162 APGETIIATVFKFVEPPENNEKPMDQRSRVKF 193