Miyakogusa Predicted Gene

Lj2g3v2001380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2001380.1 Non Chatacterized Hit- tr|I0YT40|I0YT40_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,39.39,0.0000000004,MUTS HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR
MUTS RELATED PROTEINS,NULL,CUFF.38318.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4...   168   1e-42

>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
           chr4:9708742-9714068 FORWARD LENGTH=792
          Length = 792

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/102 (77%), Positives = 88/102 (86%)

Query: 1   MEDDGGESSSFVVGIIENRAKEVGIAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPI 60
           MEDDGGE SSFV G+IENRAKEVG+AAFDLRSASLHLSQYIETSSSYQNTKTLL FYDP 
Sbjct: 1   MEDDGGERSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPS 60

Query: 61  VIIVPPNKSASNSTAAVTDFIDRFYGSVKKVVVARCCFDDTK 102
           VIIVPPNK A++    V++ +DR Y +V+KVV AR CFDDTK
Sbjct: 61  VIIVPPNKLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTK 102