Miyakogusa Predicted Gene

Lj2g3v2001370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2001370.1 tr|G7K4X7|G7K4X7_MEDTR ETHE1 protein
mitochondrial OS=Medicago truncatula GN=MTR_5g097770 PE=4
SV=1,68.97,0.000000000000003,MutS_V,DNA mismatch repair protein MutS,
C-terminal; MUTS HOMOLOG 4, MSH4,NULL; DNA MISMATCH REPAIR
,CUFF.38315.1
         (126 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4...   182   6e-47

>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
           chr4:9708742-9714068 FORWARD LENGTH=792
          Length = 792

 Score =  182 bits (461), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 107/126 (84%)

Query: 1   MENMAELATIYPNVKILHFHVDLKNNHLDFKFQLKEGPKHIPHYGLLLAEVAGLPSPVIE 60
           M+++AELATIYPNVK+LHF+VD+++N LDFKFQL++G  H+PHYGLLLAEVAGLPS VI+
Sbjct: 667 MDSLAELATIYPNVKVLHFYVDIRDNRLDFKFQLRDGTLHVPHYGLLLAEVAGLPSTVID 726

Query: 61  NARMITSRISEKEMRRMKVNCLQYHSIQRAYHVAQRLLCLKYSNQDEDTIRQALRNLKET 120
            AR+IT RI++KE +R+++NC ++H I R Y VAQRL+CLKYS Q ED+IRQAL+NL E+
Sbjct: 727 TARIITKRITDKENKRIELNCGKHHEIHRIYRVAQRLICLKYSRQTEDSIRQALQNLNES 786

Query: 121 CLNHKL 126
               +L
Sbjct: 787 FTEERL 792