Miyakogusa Predicted Gene

Lj2g3v1989230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989230.1 Non Chatacterized Hit- tr|B9SUU6|B9SUU6_RICCO
Receptor serine/threonine kinase, putative OS=Ricinus
,31.58,0.000000000000002,seg,NULL,CUFF.38316.1
         (234 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25410.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    74   6e-14
AT2G46495.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    73   2e-13
AT5G53110.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    71   6e-13
AT2G46494.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    55   4e-08
AT5G36001.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    55   6e-08
AT5G36001.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    54   7e-08
AT1G28040.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    52   5e-07

>AT2G25410.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:10814470-10815917 FORWARD LENGTH=377
          Length = 377

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 17  CSVFEVTHASPDIHYPFHIKGKQPQHD--SHFELL-QENTTTTIHFPSYGDLLVNSISYD 73
           C  F  +  S    +PF +   QP+    S F L+ +++  TT+  P     LV  I Y+
Sbjct: 29  CYSFSCSQESVVARFPFSLFSYQPESCGYSGFNLICKDDANTTLKLPKSEPFLVKEIDYE 88

Query: 74  TKNIYLADPKNCPHRVFMNLNLTLTPFQYYYVLKNYTYLNC--STKLSSPFIEIPCLSD- 130
           T+ I L DP+NC  R  +N + + +PF +    +NYT+L C     +++ F  I CL + 
Sbjct: 89  TQRIRLNDPENCLARRLLNFDPSGSPFSFLRS-RNYTFLICPKEANITASFRAIDCLGNT 147

Query: 131 -SSYHVYTVDPALPVPGSCKGIKTVAIPFK----YSPYL-SDNSFGLRLTWDLHDSREEG 184
            SS+ V   +    +P SC   K + +PF     Y+ Y    NS  + L WD  D R+  
Sbjct: 148 TSSFFVVQFENLGSMPSSCHIFKILPLPFSWFVAYTTYPDGQNSRDMWLKWDSPDCRDCE 207

Query: 185 NQT 187
            +T
Sbjct: 208 RRT 210


>AT2G46495.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:19084134-19085704 REVERSE LENGTH=372
          Length = 372

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 16/163 (9%)

Query: 29  IHYPFHIKGKQPQHDSHFELLQENTT---TTIHFPSYGDLLVNSISYDTKNIYLADPKNC 85
           + +PF +  KQP+   H     + T    T +  P+ G  LV  I Y ++ I L DP+NC
Sbjct: 38  VRFPFWLLSKQPELCGHAGFNLQCTASPKTALKLPNSGTFLVREIDYLSQQIRLYDPENC 97

Query: 86  PHRVFMNLNLTLTPFQYYYVLKNYTYLNCSTKL--SSPFIEIPCLSDSS---YHVYTVDP 140
             R  +  +++ +PF   Y++ +YT+L+C  ++  SS F  IPCL +S+       ++D 
Sbjct: 98  LARKLLTFDISRSPFSALYLV-SYTFLSCPNEVAKSSRFDSIPCLGNSTTSFLATTSLDL 156

Query: 141 ALPVPGSCKGIKTVAIPF------KYSPYLSD-NSFGLRLTWD 176
           A  +  SC+ +KT+ +P       K S + +D N   L L WD
Sbjct: 157 AKSMLPSCQIVKTLDVPVSRRVIAKKSRFSTDVNDKDLWLKWD 199


>AT5G53110.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:21529022-21533008 FORWARD LENGTH=382
          Length = 382

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 27/174 (15%)

Query: 26  SPDIHYPFHIKGKQPQ---HDSHFEL---LQENTTTTIHFPSYGDLLVNSISYDTKNIYL 79
            P I +PF +K +Q     +D  F+L   +     TTI  P  G+  V  I Y  + I++
Sbjct: 39  GPIIRFPFRLKHQQSHSCGYDKGFDLTCDINAGNRTTITLPFSGNFTVEEIDYAAQEIWI 98

Query: 80  ADPKNCPHRVFMNLNLTLTPFQYYYVLKNYTYLNCSTK---LSSPFIEIPCLSDSSYHVY 136
            DP NC  +  + LNL  TPF   Y ++ +T+ NC T       P   I CLS  +  V+
Sbjct: 99  NDPNNCLPQRILQLNLNSTPFSGVY-MRQFTFFNCPTSEYLRFRPLNPITCLSGKNSTVF 157

Query: 137 TVDPALPVP--------GSCKGIKTVAIPFKYSPY-----LSDNSFGLRLTWDL 177
               A P P         SC+ +KTV +P ++  Y      SD S  L LTW +
Sbjct: 158 ----ATPSPRVINYLSSQSCRLMKTVYVPVRWPFYEQIVSSSDLSDNLWLTWRV 207


>AT2G46494.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:19082344-19083811 REVERSE LENGTH=362
          Length = 362

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 23/152 (15%)

Query: 46  FELLQEN-TTTTIHFPSYGDLLVNSISYDTKNIYLADPKNCPHRVFMNLNLTLTPFQYYY 104
           F LL  N   T +  P  G   V  I Y  + IY+ DP+NC  +  +  N++ +PF   +
Sbjct: 56  FNLLCTNLNNTVLQLPMSGTFFVQYIDYRKQQIYINDPENCLAKRLLTFNISGSPFSPRF 115

Query: 105 VLKNYTYLNCSTKLSSP--FIEIPCLSDSSYHVYT------VDPALPVPGSCKGIKTVAI 156
               YT+L C  +L  P  +  IPCLS+S+   +        +  LP   SC+ +K + +
Sbjct: 116 DTL-YTFLTCPNELVLPSWYPSIPCLSNSTSSFFATSNFALAESMLP---SCQIVKRIYV 171

Query: 157 PF-------KYSPYLSDNSFGLRLTWDLHDSR 181
           P        ++S YL+ +   L L W+  + R
Sbjct: 172 PADSPFAETRFSSYLNQS---LLLEWNSPNCR 200


>AT5G36001.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:14142050-14142715 FORWARD LENGTH=221
          Length = 221

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 12/155 (7%)

Query: 28  DIHYPFHIKGKQPQHDSHFELLQENTTTTIHFPSYGDLLVNSISYDTKNIYLADPKNCPH 87
           D+ +PF +  +Q      +     +  T +  P+    LV  I   ++ I+L DP NC  
Sbjct: 41  DVSFPFWLSPEQ-SSSCDYPGFNLHCETALKLPNSRRFLVQDIK--SQRIHLRDPDNCLA 97

Query: 88  RVFMNLNLTLTPFQYYYVLKNYTYLNCSTK--LSSPFIEIPCLSDSSYHVYTVDPALPVP 145
           R  ++ + +++PF   +++ NYT+L+C  +   SS    I CL++S+    T      +P
Sbjct: 98  RRLLSFDASMSPFSPLHLV-NYTFLSCHNENVKSSSLEPIHCLTNSTPSDLTGS----MP 152

Query: 146 GSCKGIKTVAIPFKYSPYLSD-NSFGLRLTWDLHD 179
            SC+ +KT+ +P   SP   D N   L L WD  D
Sbjct: 153 SSCQTLKTLLLPVS-SPLAGDLNKQDLWLKWDSPD 186


>AT5G36001.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:14142050-14143143 FORWARD LENGTH=322
          Length = 322

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 28  DIHYPFHIKGKQPQHDSHFELLQENTTTTIHFPSYGDLLVNSISYDTKNIYLADPKNCPH 87
           D+ +PF +  +Q      +     +  T +  P+    LV  I   ++ I+L DP NC  
Sbjct: 41  DVSFPFWLSPEQ-SSSCDYPGFNLHCETALKLPNSRRFLVQDI--KSQRIHLRDPDNCLA 97

Query: 88  RVFMNLNLTLTPFQYYYVLKNYTYLNCSTK--LSSPFIEIPCLSDSSYHVYTVDPALPVP 145
           R  ++ + +++PF   + L NYT+L+C  +   SS    I CL++S+    T      +P
Sbjct: 98  RRLLSFDASMSPFSPLH-LVNYTFLSCHNENVKSSSLEPIHCLTNSTPSDLTGS----MP 152

Query: 146 GSCKGIKTVAIPFKYSPYLSD-NSFGLRLTWDLHD 179
            SC+ +KT+ +P   SP   D N   L L WD  D
Sbjct: 153 SSCQTLKTLLLPVS-SPLAGDLNKQDLWLKWDSPD 186


>AT1G28040.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:9773580-9774910 REVERSE LENGTH=299
          Length = 299

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 63  GDLLVNSISYDTKNIYLADPKNCPHRVFMNLNLTLTPFQYYYVLKNYTYLNCSTKLSSP- 121
           G  LV+ I+Y  + I ++DP+NC  +  +  N + +PF Y +    YT+L C  ++  P 
Sbjct: 3   GTFLVDEINYQKQQISISDPENCMVKRLLTFNTSGSPFSYGFSFY-YTFLTCPNEVVIPV 61

Query: 122 --FIEIPCLSDSSYHVYTVDP---ALPVPGSCKGIKTVAIP 157
              + IPCLS+S+   +       +  +P SC+ +K + +P
Sbjct: 62  WSLMSIPCLSNSTSSFFATSNLTFSKLLPPSCQIVKGLYVP 102