Miyakogusa Predicted Gene

Lj2g3v1989100.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989100.2 tr|A9TEH6|A9TEH6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169610,52.48,0.0000000000005,seg,NULL;
coiled-coil,NULL,CUFF.38297.2
         (307 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17540.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   186   1e-47

>AT4G17540.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:9775982-9777765 FORWARD LENGTH=294
          Length = 294

 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 161/296 (54%), Gaps = 42/296 (14%)

Query: 13  GIRIENPFTLKVGQVFTXXXXXXXXXXXXXRPLNLGAIPMLNEVMSATRGATDAFSGVSR 72
           GI+IENPF  K  QVFT              PLNLG+IPM+ E+M++ RGAT+ FSG + 
Sbjct: 27  GIKIENPFAFKALQVFTGFGVGCGVGIGSGAPLNLGSIPMVGEIMNSARGATNVFSGATH 86

Query: 73  HVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKPGVLNQIQSCVAVAVTKMMMKFGLT 132
           HVN +L+K GA+NI+                +AVKP  ++++Q+ +    + +M K G T
Sbjct: 87  HVNGALRKLGARNIQAGVGCGVGFGHGFGVGIAVKPSAIHKLQASIMGTASNLMTKLGRT 146

Query: 133 PSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLATRSTDHISQSPAGSQP-VQIGSAFE 191
                SQ                            T + D +SQS  G +  V   ++ +
Sbjct: 147 SETTSSQ----------------------------TETEDQVSQSVTGHKKHVDTKASLK 178

Query: 192 NTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQSPVLKGEGGGSDE-AAKRLQSENKI 250
           N+   G+S +S          FG+RTEKV+N+FL +P+LK +   ++E    +L+SE+ +
Sbjct: 179 NS---GSSTNS--------RTFGTRTEKVINSFLDNPILKHQDTTAEERQVTQLESESLM 227

Query: 251 LQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKLHASHSGRMRNTLPCTDCFEC 306
           LQMVLKHQ++I+E++EENEKLR+I++EDLKV   KL    S     T PC DCFEC
Sbjct: 228 LQMVLKHQKLIDEVMEENEKLRRIIIEDLKVSPEKLKLVSSYNYE-TPPCKDCFEC 282