Miyakogusa Predicted Gene

Lj2g3v1989100.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989100.1 tr|A9TEH6|A9TEH6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169610,49.3,0.00000000009,seg,NULL;
coiled-coil,NULL,CUFF.38297.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17540.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   141   6e-34

>AT4G17540.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:9775982-9777765 FORWARD LENGTH=294
          Length = 294

 Score =  141 bits (355), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/240 (35%), Positives = 134/240 (55%), Gaps = 41/240 (17%)

Query: 21  AIPMLNEVMSATRGATDAFSGVSRHVNSSLKKFGAKNIEVXXXXXXXXXXXXXXXLAVKP 80
           +IPM+ E+M++ RGAT+ FSG + HVN +L+K GA+NI+                +AVKP
Sbjct: 63  SIPMVGEIMNSARGATNVFSGATHHVNGALRKLGARNIQAGVGCGVGFGHGFGVGIAVKP 122

Query: 81  GVLNQIQSCVAVAVTKMMMKFGLTPSLPFSQSAIPASLQSATGTFNTNKISAGSMVQLAT 140
             ++++Q+ +    + +M K G T     SQ                            T
Sbjct: 123 SAIHKLQASIMGTASNLMTKLGRTSETTSSQ----------------------------T 154

Query: 141 RSTDHISQSPAGSQP-VQIGSAFENTALKGTSVDSALKGTSVDSAFGSRTEKVLNNFLQS 199
            + D +SQS  G +  V   ++ +N+   G+S +S          FG+RTEKV+N+FL +
Sbjct: 155 ETEDQVSQSVTGHKKHVDTKASLKNS---GSSTNS--------RTFGTRTEKVINSFLDN 203

Query: 200 PVLKGEGGGSDE-AAKRLQSENKILQMVLKHQQIIEELVEENEKLRQILVEDLKVPSSKL 258
           P+LK +   ++E    +L+SE+ +LQMVLKHQ++I+E++EENEKLR+I++EDLKV   KL
Sbjct: 204 PILKHQDTTAEERQVTQLESESLMLQMVLKHQKLIDEVMEENEKLRRIIIEDLKVSPEKL 263