Miyakogusa Predicted Gene

Lj2g3v1989080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1989080.1 tr|C1EF35|C1EF35_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_87955
,44.95,6e-19,rplS_bact: ribosomal protein L19,Ribosomal protein L19;
seg,NULL; Translation proteins SH3-like doma,CUFF.38298.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17560.1 | Symbols:  | Ribosomal protein L19 family protein |...   195   2e-50
AT5G47190.1 | Symbols:  | Ribosomal protein L19 family protein |...   189   2e-48
AT4G11630.1 | Symbols:  | Ribosomal protein L19 family protein |...   110   9e-25
AT5G11750.1 | Symbols:  | Ribosomal protein L19 family protein |...   108   3e-24
AT1G24240.1 | Symbols:  | Ribosomal protein L19 family protein |...    86   3e-17

>AT4G17560.1 | Symbols:  | Ribosomal protein L19 family protein |
           chr4:9780343-9781752 FORWARD LENGTH=225
          Length = 225

 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 114/152 (75%), Gaps = 4/152 (2%)

Query: 79  EGSVDQVPEDGEAELASDS----EVEQPKPPRKQRVKLGDVMGILNQRAIEASESMRPTP 134
           EG+ +   E+  AE+A       EV + KP RK R+KLGDVMGILNQ+AIE +E +RP P
Sbjct: 74  EGNTEAESEEFVAEIADTEGNVEEVVEAKPTRKPRIKLGDVMGILNQKAIEVAEKVRPVP 133

Query: 135 EIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXXXXXXXXXXXXXXVEIVFPIYSP 194
           EIRTGD+VEIKLEVPENKRRLSIYKGIV+SRQN                 VEIVFPIYSP
Sbjct: 134 EIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSP 193

Query: 195 NIKEIKVVNHRKVRRARLYYLRDKLPRFSTFK 226
           NIKEIKVV+HRKVRRARLYYLRDKLPR STFK
Sbjct: 194 NIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225


>AT5G47190.1 | Symbols:  | Ribosomal protein L19 family protein |
           chr5:19164432-19166064 REVERSE LENGTH=229
          Length = 229

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 103/127 (81%)

Query: 100 EQPKPPRKQRVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYK 159
           E+ KPP K RVKLGD+MG+LN++AIE +E++RP P +RTGD+VEIKLEVPENKRRLSIYK
Sbjct: 103 EEAKPPWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYK 162

Query: 160 GIVISRQNXXXXXXXXXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKL 219
           GIV+SRQN                 VEIVFPIYSPNIKEIKVV+HRKVRRARLYYLRDKL
Sbjct: 163 GIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKL 222

Query: 220 PRFSTFK 226
           PR STFK
Sbjct: 223 PRLSTFK 229


>AT4G11630.1 | Symbols:  | Ribosomal protein L19 family protein |
           chr4:7019793-7021068 FORWARD LENGTH=225
          Length = 225

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 76/105 (72%)

Query: 115 VMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXXXX 174
           +M I+++ A+E   S+R  PEI+ G +V++K+EVPENKRR+SI KG+VI+R+N       
Sbjct: 115 IMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 174

Query: 175 XXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKL 219
                     VE +FP+YSPN++EIKVV+ +KVRRA+LYYLRDK+
Sbjct: 175 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKV 219


>AT5G11750.1 | Symbols:  | Ribosomal protein L19 family protein |
           chr5:3787343-3788926 FORWARD LENGTH=229
          Length = 229

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 76/105 (72%)

Query: 115 VMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXXXX 174
           +M I+++ A+E   ++R  PEI+ G +V++K+EVPENKRR+SI KG+VI+R+N       
Sbjct: 119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178

Query: 175 XXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKL 219
                     VE +FP+YSPN++EIKVV+ +KVRRA+LYYLRDK+
Sbjct: 179 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKV 223


>AT1G24240.1 | Symbols:  | Ribosomal protein L19 family protein |
           chr1:8586431-8587970 FORWARD LENGTH=222
          Length = 222

 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 75/106 (70%)

Query: 114 DVMGILNQRAIEASESMRPTPEIRTGDVVEIKLEVPENKRRLSIYKGIVISRQNXXXXXX 173
            +M I+++ A+E   ++R  PEI+ G +V++K+EVPENKRR+SI KG+VI+R+N      
Sbjct: 111 HIMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNST 170

Query: 174 XXXXXXXXXXXVEIVFPIYSPNIKEIKVVNHRKVRRARLYYLRDKL 219
                      VE +FP+YSPN++ IKVV+ +KVRRA+LYYLR+K+
Sbjct: 171 FRIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYYLREKV 216