Miyakogusa Predicted Gene

Lj2g3v1988980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988980.1 tr|G7JYL5|G7JYL5_MEDTR DNA repair endonuclease
UVH1 OS=Medicago truncatula GN=MTR_5g013480 PE=4
SV=1,85.26,0,seg,NULL; ERCC4 domain,ERCC4 domain; no description,DNA
repair nuclease, XPF-type/Helicase; coiled-c,CUFF.38284.1
         (956 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonucl...  1174   0.0  
AT5G41150.2 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonucl...   739   0.0  

>AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction
           endonuclease, type II-like superfamily protein |
           chr5:16473044-16476919 REVERSE LENGTH=956
          Length = 956

 Score = 1174 bits (3038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/900 (64%), Positives = 684/900 (76%), Gaps = 37/900 (4%)

Query: 76  PSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETST 135
           P+EITADLPA+ R+SLYTSG+ FFIT RILIVDLLT R+P S +AGI +LNAHSISETST
Sbjct: 75  PTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAGIFILNAHSISETST 134

Query: 136 EAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRRLHLWPRFQVYVSQEL 195
           EAFI+RI +SLN  AY+RAFSD+P AMVSGFAK ERTM+ LFLR++HLWPRFQ+ VSQEL
Sbjct: 135 EAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKIHLWPRFQLDVSQEL 194

Query: 196 ERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIEDLTVENGLFKSFDEI 255
           ER+PP+VVDIRV M+ YMVGIQKAIIEVMDACLKEM+KTNKVD++DLTVE+GLFKSFDEI
Sbjct: 195 EREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDDLTVESGLFKSFDEI 254

Query: 256 VRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIF 315
           VRRQLDPIWHTLGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LDTLRVSES+RSVW+F
Sbjct: 255 VRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLDTLRVSESYRSVWLF 314

Query: 316 AEASYKIFDYAKKRVFHLVRSDGTXXXXXXXXXXXXXXXXXXXXXDTEEVDGTSSASSNA 375
           AE+SYKIFD+AKKRV+ LV++                          E V G ++ +   
Sbjct: 315 AESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDSVEAVGGETATNVAT 374

Query: 376 GXXXXXXXXXAPKWKXXXXXXXXXXXXXQKQGTLREEVLAEGEDTDN-GIVLVACKDEMS 434
           G         APKWK              KQ        +E +++DN GIVLVACKDE S
Sbjct: 375 GVVVEEVLEEAPKWKVLREILEETQEERLKQA------FSEEDNSDNNGIVLVACKDERS 428

Query: 435 CLQLEECITNSPKKVMREEWAKYLLNKVQLRDIVHXXXXXXXXX-GFGILDGVTPIAPAQ 493
           C+QLE+CITN+P+KVMREEW  YLL+K++LR +            GFGILDGV P+   Q
Sbjct: 429 CMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKTPKGFGILDGVVPVTTIQ 488

Query: 494 KMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQP----DFSGQVRSKGKR------ 543
             E S++ +QEH+AL+AAAS ++K  +   +      P    D +   + K K+      
Sbjct: 489 NSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKKDPTSLR 548

Query: 544 -------KLGNRNSPIIVDGLGAQTDNKDASTSEKTGMSVDNMVLRRHTNPDSASGSGKP 596
                  K    + P I+ G   +    +ASTS             +  N    SG+ K 
Sbjct: 549 RSLRSCNKKTTNSKPEILPGPENEEKANEASTSAP-----------QEANAVRPSGAKK- 596

Query: 597 LPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAENPSKRLKVYFIFYEDST 656
           LPPVHFYALESDQP+LDILKPS+IIVYHPDM FVRE+EVYKAENP ++LKVYFIFY++ST
Sbjct: 597 LPPVHFYALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDEST 656

Query: 657 EVQKFEASIRRENGAFESLIRQKSMMMIPVDQGGHCLGLNSTLEADLNTPQNSITRKAGG 716
           EVQKFEASIRREN AFESLIRQKS M+IPVDQ G C+G NS+ E   ++ QNS+TRKAGG
Sbjct: 657 EVQKFEASIRRENEAFESLIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGG 716

Query: 717 RKEVDKDMQVIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFM 776
           RKE++K+ QVIVDMREFMSSLPNVLHQKGM+IIPVTLEVGDYILSP ICVERKSIQDLF 
Sbjct: 717 RKELEKETQVIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQ 776

Query: 777 SFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALH 836
           SFTSGRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP +IISKLSLL LH
Sbjct: 777 SFTSGRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLH 836

Query: 837 FPRLRIIWSRSLHATAEIFASLKANQDEPDETKAMRVGVPSEEGIVEDDVRAENYNTSAV 896
           FPRLR++WSRSLHATAEIF +LK+NQDEPDET+A+RVGVPSEEGI+E+D+RAENYNTSAV
Sbjct: 837 FPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAV 896

Query: 897 EFLRRLPGVTDSNYRAIMDGCTSXXXXXXXXXXXXXXXMGGHKAARTLREFLDAKYPTLL 956
           EFLRRLPGV+D+NYR+IM+ C S               MGGHK A++LREFLDAKYPTLL
Sbjct: 897 EFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956


>AT5G41150.2 | Symbols: UVH1, ATRAD1, RAD1 | Restriction
           endonuclease, type II-like superfamily protein |
           chr5:16474378-16476919 REVERSE LENGTH=689
          Length = 689

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/632 (59%), Positives = 451/632 (71%), Gaps = 37/632 (5%)

Query: 76  PSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETST 135
           P+EITADLPA+ R+SLYTSG+ FFIT RILIVDLLT R+P S +AGI +LNAHSISETST
Sbjct: 75  PTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAGIFILNAHSISETST 134

Query: 136 EAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRRLHLWPRFQVYVSQEL 195
           EAFI+RI +SLN  AY+RAFSD+P AMVSGFAK ERTM+ LFLR++HLWPRFQ+ VSQEL
Sbjct: 135 EAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKIHLWPRFQLDVSQEL 194

Query: 196 ERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIEDLTVENGLFKSFDEI 255
           ER+PP+VVDIRV M+ YMVGIQKAIIEVMDACLKEM+KTNKVD++DLTVE+GLFKSFDEI
Sbjct: 195 EREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDDLTVESGLFKSFDEI 254

Query: 256 VRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIF 315
           VRRQLDPIWHTLGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LDTLRVSES+RSVW+F
Sbjct: 255 VRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLDTLRVSESYRSVWLF 314

Query: 316 AEASYKIFDYAKKRVFHLVRSDGTXXXXXXXXXXXXXXXXXXXXXDTEEVDGTSSASSNA 375
           AE+SYKIFD+AKKRV+ LV++                          E V G ++ +   
Sbjct: 315 AESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDSVEAVGGETATNVAT 374

Query: 376 GXXXXXXXXXAPKWKXXXXXXXXXXXXXQKQGTLREEVLAEGEDTD-NGIVLVACKDEMS 434
           G         APKWK              KQ        +E +++D NGIVLVACKDE S
Sbjct: 375 GVVVEEVLEEAPKWKVLREILEETQEERLKQA------FSEEDNSDNNGIVLVACKDERS 428

Query: 435 CLQLEECITNSPKKVMREEWAKYLLNKVQLRDI-VHXXXXXXXXXGFGILDGVTPIAPAQ 493
           C+QLE+CITN+P+KVMREEW  YLL+K++LR +            GFGILDGV P+   Q
Sbjct: 429 CMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKTPKGFGILDGVVPVTTIQ 488

Query: 494 KMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQP----DFSGQVRSKGKR------ 543
             E S++ +QEH+AL+AAAS ++K  +   +      P    D +   + K K+      
Sbjct: 489 NSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKKDPTSLR 548

Query: 544 -------KLGNRNSPIIVDGLGAQTDNKDASTSEKTGMSVDNMVLRRHTNPDSASGSGKP 596
                  K    + P I+ G   +    +ASTS             +  N    SG+ K 
Sbjct: 549 RSLRSCNKKTTNSKPEILPGPENEEKANEASTSAP-----------QEANAVRPSGAKK- 596

Query: 597 LPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAENPSKRLKVYFIFYEDST 656
           LPPVHFYALESDQP+LDILKPS+IIVYHPDM FVRE+EVYKAENP ++LKVYFIFY++ST
Sbjct: 597 LPPVHFYALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDEST 656

Query: 657 EVQKFEASIRRENGAFESLIRQKSMMMIPVDQ 688
           EVQKFEASIRREN AFESLIRQKS M+IPVDQ
Sbjct: 657 EVQKFEASIRRENEAFESLIRQKSSMIIPVDQ 688