Miyakogusa Predicted Gene
- Lj2g3v1988980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1988980.1 tr|G7JYL5|G7JYL5_MEDTR DNA repair endonuclease
UVH1 OS=Medicago truncatula GN=MTR_5g013480 PE=4
SV=1,85.26,0,seg,NULL; ERCC4 domain,ERCC4 domain; no description,DNA
repair nuclease, XPF-type/Helicase; coiled-c,CUFF.38284.1
(956 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonucl... 1174 0.0
AT5G41150.2 | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonucl... 739 0.0
>AT5G41150.1 | Symbols: UVH1, ATRAD1, RAD1 | Restriction
endonuclease, type II-like superfamily protein |
chr5:16473044-16476919 REVERSE LENGTH=956
Length = 956
Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/900 (64%), Positives = 684/900 (76%), Gaps = 37/900 (4%)
Query: 76 PSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETST 135
P+EITADLPA+ R+SLYTSG+ FFIT RILIVDLLT R+P S +AGI +LNAHSISETST
Sbjct: 75 PTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAGIFILNAHSISETST 134
Query: 136 EAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRRLHLWPRFQVYVSQEL 195
EAFI+RI +SLN AY+RAFSD+P AMVSGFAK ERTM+ LFLR++HLWPRFQ+ VSQEL
Sbjct: 135 EAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKIHLWPRFQLDVSQEL 194
Query: 196 ERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIEDLTVENGLFKSFDEI 255
ER+PP+VVDIRV M+ YMVGIQKAIIEVMDACLKEM+KTNKVD++DLTVE+GLFKSFDEI
Sbjct: 195 EREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDDLTVESGLFKSFDEI 254
Query: 256 VRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIF 315
VRRQLDPIWHTLGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LDTLRVSES+RSVW+F
Sbjct: 255 VRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLDTLRVSESYRSVWLF 314
Query: 316 AEASYKIFDYAKKRVFHLVRSDGTXXXXXXXXXXXXXXXXXXXXXDTEEVDGTSSASSNA 375
AE+SYKIFD+AKKRV+ LV++ E V G ++ +
Sbjct: 315 AESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDSVEAVGGETATNVAT 374
Query: 376 GXXXXXXXXXAPKWKXXXXXXXXXXXXXQKQGTLREEVLAEGEDTDN-GIVLVACKDEMS 434
G APKWK KQ +E +++DN GIVLVACKDE S
Sbjct: 375 GVVVEEVLEEAPKWKVLREILEETQEERLKQA------FSEEDNSDNNGIVLVACKDERS 428
Query: 435 CLQLEECITNSPKKVMREEWAKYLLNKVQLRDIVHXXXXXXXXX-GFGILDGVTPIAPAQ 493
C+QLE+CITN+P+KVMREEW YLL+K++LR + GFGILDGV P+ Q
Sbjct: 429 CMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKTPKGFGILDGVVPVTTIQ 488
Query: 494 KMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQP----DFSGQVRSKGKR------ 543
E S++ +QEH+AL+AAAS ++K + + P D + + K K+
Sbjct: 489 NSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKKDPTSLR 548
Query: 544 -------KLGNRNSPIIVDGLGAQTDNKDASTSEKTGMSVDNMVLRRHTNPDSASGSGKP 596
K + P I+ G + +ASTS + N SG+ K
Sbjct: 549 RSLRSCNKKTTNSKPEILPGPENEEKANEASTSAP-----------QEANAVRPSGAKK- 596
Query: 597 LPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAENPSKRLKVYFIFYEDST 656
LPPVHFYALESDQP+LDILKPS+IIVYHPDM FVRE+EVYKAENP ++LKVYFIFY++ST
Sbjct: 597 LPPVHFYALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDEST 656
Query: 657 EVQKFEASIRRENGAFESLIRQKSMMMIPVDQGGHCLGLNSTLEADLNTPQNSITRKAGG 716
EVQKFEASIRREN AFESLIRQKS M+IPVDQ G C+G NS+ E ++ QNS+TRKAGG
Sbjct: 657 EVQKFEASIRRENEAFESLIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGG 716
Query: 717 RKEVDKDMQVIVDMREFMSSLPNVLHQKGMRIIPVTLEVGDYILSPLICVERKSIQDLFM 776
RKE++K+ QVIVDMREFMSSLPNVLHQKGM+IIPVTLEVGDYILSP ICVERKSIQDLF
Sbjct: 717 RKELEKETQVIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQ 776
Query: 777 SFTSGRLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNSIISKLSLLALH 836
SFTSGRL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP +IISKLSLL LH
Sbjct: 777 SFTSGRLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLH 836
Query: 837 FPRLRIIWSRSLHATAEIFASLKANQDEPDETKAMRVGVPSEEGIVEDDVRAENYNTSAV 896
FPRLR++WSRSLHATAEIF +LK+NQDEPDET+A+RVGVPSEEGI+E+D+RAENYNTSAV
Sbjct: 837 FPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAV 896
Query: 897 EFLRRLPGVTDSNYRAIMDGCTSXXXXXXXXXXXXXXXMGGHKAARTLREFLDAKYPTLL 956
EFLRRLPGV+D+NYR+IM+ C S MGGHK A++LREFLDAKYPTLL
Sbjct: 897 EFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956
>AT5G41150.2 | Symbols: UVH1, ATRAD1, RAD1 | Restriction
endonuclease, type II-like superfamily protein |
chr5:16474378-16476919 REVERSE LENGTH=689
Length = 689
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/632 (59%), Positives = 451/632 (71%), Gaps = 37/632 (5%)
Query: 76 PSEITADLPAHHRHSLYTSGNAFFITARILIVDLLTNRLPTSKIAGIVLLNAHSISETST 135
P+EITADLPA+ R+SLYTSG+ FFIT RILIVDLLT R+P S +AGI +LNAHSISETST
Sbjct: 75 PTEITADLPANQRYSLYTSGSPFFITPRILIVDLLTQRIPVSSLAGIFILNAHSISETST 134
Query: 136 EAFIVRIFRSLNRDAYVRAFSDKPHAMVSGFAKAERTMKCLFLRRLHLWPRFQVYVSQEL 195
EAFI+RI +SLN AY+RAFSD+P AMVSGFAK ERTM+ LFLR++HLWPRFQ+ VSQEL
Sbjct: 135 EAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTMRALFLRKIHLWPRFQLDVSQEL 194
Query: 196 ERDPPDVVDIRVPMTRYMVGIQKAIIEVMDACLKEMRKTNKVDIEDLTVENGLFKSFDEI 255
ER+PP+VVDIRV M+ YMVGIQKAIIEVMDACLKEM+KTNKVD++DLTVE+GLFKSFDEI
Sbjct: 195 EREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKKTNKVDVDDLTVESGLFKSFDEI 254
Query: 256 VRRQLDPIWHTLGKKTKQLVSDLKTLRKLLDYLVRYDAVTYLKYLDTLRVSESFRSVWIF 315
VRRQLDPIWHTLGK+TKQLVSDLKTLRKLLDYLVRYDAV++LK+LDTLRVSES+RSVW+F
Sbjct: 255 VRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDAVSFLKFLDTLRVSESYRSVWLF 314
Query: 316 AEASYKIFDYAKKRVFHLVRSDGTXXXXXXXXXXXXXXXXXXXXXDTEEVDGTSSASSNA 375
AE+SYKIFD+AKKRV+ LV++ E V G ++ +
Sbjct: 315 AESSYKIFDFAKKRVYRLVKASDVKSKEHVKNKSGKKRNSKGETDSVEAVGGETATNVAT 374
Query: 376 GXXXXXXXXXAPKWKXXXXXXXXXXXXXQKQGTLREEVLAEGEDTD-NGIVLVACKDEMS 434
G APKWK KQ +E +++D NGIVLVACKDE S
Sbjct: 375 GVVVEEVLEEAPKWKVLREILEETQEERLKQA------FSEEDNSDNNGIVLVACKDERS 428
Query: 435 CLQLEECITNSPKKVMREEWAKYLLNKVQLRDI-VHXXXXXXXXXGFGILDGVTPIAPAQ 493
C+QLE+CITN+P+KVMREEW YLL+K++LR + GFGILDGV P+ Q
Sbjct: 429 CMQLEDCITNNPQKVMREEWEMYLLSKIELRSMQTPQKKKQKTPKGFGILDGVVPVTTIQ 488
Query: 494 KMETSTINKQEHDALLAAASELKKRVENVHVVEDTLQP----DFSGQVRSKGKR------ 543
E S++ +QEH+AL+AAAS ++K + + P D + + K K+
Sbjct: 489 NSEGSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKKDPTSLR 548
Query: 544 -------KLGNRNSPIIVDGLGAQTDNKDASTSEKTGMSVDNMVLRRHTNPDSASGSGKP 596
K + P I+ G + +ASTS + N SG+ K
Sbjct: 549 RSLRSCNKKTTNSKPEILPGPENEEKANEASTSAP-----------QEANAVRPSGAKK- 596
Query: 597 LPPVHFYALESDQPVLDILKPSIIIVYHPDMAFVREIEVYKAENPSKRLKVYFIFYEDST 656
LPPVHFYALESDQP+LDILKPS+IIVYHPDM FVRE+EVYKAENP ++LKVYFIFY++ST
Sbjct: 597 LPPVHFYALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDEST 656
Query: 657 EVQKFEASIRRENGAFESLIRQKSMMMIPVDQ 688
EVQKFEASIRREN AFESLIRQKS M+IPVDQ
Sbjct: 657 EVQKFEASIRRENEAFESLIRQKSSMIIPVDQ 688