Miyakogusa Predicted Gene

Lj2g3v1988870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988870.1 Non Chatacterized Hit- tr|I3SBI0|I3SBI0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,98.91,2.94273e-44,L37a: ribosomal protein L37a,Ribosomal protein
L37ae; 60S RIBOSOMAL PROTEIN L37A,NULL; Ribosomal_L37,CUFF.38286.1
         (92 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10950.1 | Symbols:  | Zinc-binding ribosomal protein family ...   174   1e-44
AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family ...   174   1e-44

>AT3G10950.1 | Symbols:  | Zinc-binding ribosomal protein family
          protein | chr3:3423893-3424566 FORWARD LENGTH=92
          Length = 92

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 89/91 (97%)

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+K+FCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91


>AT3G60245.1 | Symbols:  | Zinc-binding ribosomal protein family
          protein | chr3:22268803-22269750 FORWARD LENGTH=92
          Length = 92

 Score =  174 bits (440), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/92 (92%), Positives = 88/92 (95%)

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSK+FCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTEG 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ EG
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIEG 92