Miyakogusa Predicted Gene
- Lj2g3v1988820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1988820.1 Non Chatacterized Hit- tr|B9RUR3|B9RUR3_RICCO
ATP-dependent helicase, putative OS=Ricinus communis
G,47.32,0,DEAD-like helicases superfamily,Helicase, superfamily 1/2,
ATP-binding domain; helicase superfamily ,CUFF.38275.1
(970 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 581 e-166
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 533 e-151
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 357 2e-98
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 347 3e-95
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 309 6e-84
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 296 3e-80
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 135 2e-31
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 133 8e-31
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 125 1e-28
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 122 1e-27
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 121 2e-27
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 120 6e-27
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 117 3e-26
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 117 4e-26
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 117 4e-26
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 117 5e-26
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 115 1e-25
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 114 3e-25
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 114 4e-25
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 114 4e-25
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 113 6e-25
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 108 1e-23
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 108 2e-23
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 108 2e-23
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 108 2e-23
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 108 2e-23
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 107 5e-23
AT3G32330.1 | Symbols: | DNA repair protein-related | chr3:1327... 103 9e-22
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 99 1e-20
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 96 1e-19
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 84 6e-16
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 83 1e-15
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 83 1e-15
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 83 1e-15
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 80 5e-15
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 79 2e-14
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 77 5e-14
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 77 5e-14
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 75 2e-13
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 75 2e-13
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 75 3e-13
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 73 8e-13
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 73 1e-12
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 73 1e-12
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 72 2e-12
AT3G32280.1 | Symbols: | ATP-dependent helicase family protein ... 72 2e-12
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 72 2e-12
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 70 9e-12
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 69 1e-11
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 69 2e-11
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 65 2e-10
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 65 2e-10
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 63 1e-09
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 62 1e-09
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 60 8e-09
AT3G31900.1 | Symbols: | ATP-dependent helicase family protein ... 58 3e-08
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 57 6e-08
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 56 1e-07
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 55 4e-07
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 315/706 (44%), Positives = 435/706 (61%), Gaps = 56/706 (7%)
Query: 290 FSLIQDNNASPSEPPDLCRGGKLEHDVFLDEEIGLRCRSCLRVLTEIKYVFPS---FATP 346
FS ++ N ++ P C+ GK HD+ +D E+GL+C C V EI+ + S T
Sbjct: 714 FSNVEKNISANETPAAQCKKGK--HDLCIDLEVGLKCMHCGFVEREIRSMDVSEWGEKTT 771
Query: 347 PRKKKYSYALDDVDPSVSSEFQDRV--VGXXXXXXXXXXXXXGTVWEIIPGVKENMYPHQ 404
++K+ D + S F ++ GTVW+ IPGVK MYPHQ
Sbjct: 772 RERRKF----DRFEEEEGSSFIGKLGFDAPNNSLNEGCVSSEGTVWDKIPGVKSQMYPHQ 827
Query: 405 CEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYMELYPKC 464
E FEF+W NLAG I+ N+LK + GGC++SHAPGTGKTRLTI+FLQ+Y++ +P C
Sbjct: 828 QEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDC 887
Query: 465 RPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISY 524
+P+IIAP +L TW EEFK W + IPFHN++S D + + L+ +N + +
Sbjct: 888 KPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARS-NNE 946
Query: 525 CRMAKLYYWRSEKSILGISYNLFEQFTK-KDSDE-----------------RKFLLEVPG 566
RM K+Y W KSILGISYNL+E+ KD D+ R+ L+ PG
Sbjct: 947 IRMVKIYSWIKSKSILGISYNLYEKLAGVKDEDKKTKMVREVKPDKELDDIREILMGRPG 1006
Query: 567 LVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNP 626
L+VLDE HTPRN +S IWK++S++ T KRI+LSGTPFQNNF EL N L LARP++
Sbjct: 1007 LLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLARPKYL---- 1062
Query: 627 NEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPG 686
E L + K +T K N ++ ++E++ ++ PFVHVH G+ILQ SLPG
Sbjct: 1063 ----ERLTSTLKKSGMTVTKRGKKNLGNEINNRGIEELKAVMLPFVHVHKGSILQSSLPG 1118
Query: 687 LRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTAIHPALYG---LSE 743
LR+ VV LNP LQ+ V E IE + + NV + E++ +L ++HP+L +SE
Sbjct: 1119 LRECVVVLNPPELQRRVLESIEVTHN----RKTKNVFETEHKLSLVSVHPSLVSRCKISE 1174
Query: 744 R----------MNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQ 793
+ L + RL+P + VKT+FL+E + LCE+ EKVLVFSQYIDPLKL+
Sbjct: 1175 KERLSIDEALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKH 1234
Query: 794 LEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASR 853
L F W G +VL +HGK++ K RQT I FNDP S KV LAST+AC EGISLVGASR
Sbjct: 1235 LVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASR 1294
Query: 854 VVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFF 913
V+LLDVVWNP+VERQAISRAYR+GQK+ VYTYHL+ GT + K C+QA+KD +S++VF
Sbjct: 1295 VILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVFA 1354
Query: 914 NSGR-DQHHQNVSSAELGDQILEDLIQHKKIGHIFEKVAVIHEETN 958
S R D+ + ++ A D++L+ +++H K+G +F+ + V +E +
Sbjct: 1355 CSSRHDKGKEKIAEAVTEDKVLDTMVEHSKLGDMFDNLIVQPKEAD 1400
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/725 (42%), Positives = 422/725 (58%), Gaps = 90/725 (12%)
Query: 281 ALWIESDYCFSLIQDNNASPSEPPD-LCRGGKLEHDVFLDEEIGLRCRSCLRVLTEIKYV 339
+LW + + +L ++++P + D LC G HD LD+EIGL+C C V EIK +
Sbjct: 459 SLWEDMNVALTLEGMHSSTPDKNGDMLCSKGT--HDFVLDDEIGLKCVHCAYVAVEIKDI 516
Query: 340 FPSF----ATPPRKKKYS----------YALDDVDPSVSSEFQDRVVGXXXXXXXXXXXX 385
P+ + KK S D DPS D +
Sbjct: 517 SPAMDKYRPSVNDNKKCSDRKGDPLPNRLEFDASDPSSFVAPLDNI-------------- 562
Query: 386 XGTVWEIIPGVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTG 445
GTVW+ +PG+K+ +YPHQ E FEF+W NLAG N+L + +GGC+ISH GTG
Sbjct: 563 EGTVWQYVPGIKDTLYPHQQEGFEFIWKNLAGTTKINELNSVG-VKGSGGCIISHKAGTG 621
Query: 446 KTRLTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRD 505
KTRLT++FLQSY++ +P P++IAP ++ TWE+E + W V+IPF+NMNS S
Sbjct: 622 KTRLTVVFLQSYLKRFPNSHPMVIAPATLMRTWEDEVRKWNVNIPFYNMNSLQLSGYEDA 681
Query: 506 HVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDE-----RKF 560
++ + G + RM KL W +KSILGISY L+E+ + E R+
Sbjct: 682 EAVSRLEGNRHHNSI-----RMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQVFRRM 736
Query: 561 LLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQ 620
L+E+PGL+VLDEGHTPRN SLIWK ++E+RT KRI LSGT FQNNF EL N LCLARP
Sbjct: 737 LVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARPA 796
Query: 621 FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQE-----IRNMICPFVHVH 675
K + L+K + G ++ +E ++ MI FVHVH
Sbjct: 797 ----------------DKDTISSRIHELSKCSQEGEHGRVNEENRIVDLKAMIAHFVHVH 840
Query: 676 HGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTAIH 735
GTILQESLPGLR VV LNP QK + + I+ + N + E++ + ++H
Sbjct: 841 EGTILQESLPGLRDCVVVLNPPFQQKKILDRIDTSQ---------NTFEFEHKLSAVSVH 891
Query: 736 PALY-------------GLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQ 782
P+LY G + L R RL EEGVKTKFL++ IR+ EKVLV+SQ
Sbjct: 892 PSLYLCCNPTKKEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQ 951
Query: 783 YIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRAC 842
YID LKL+ QL W EG +L +HGKV+ + RQ I FN PDS KV+LAST+AC
Sbjct: 952 YIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKAC 1011
Query: 843 YEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQA 902
EGISLVGASRVV+LDVVWNPSVE QAISRA+R+GQK+ V+ YHL+ T + +K C+Q+
Sbjct: 1012 SEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQS 1071
Query: 903 EKDHLSKMVFFNSG-RDQHHQNVSSAELGDQILEDLIQHKKIGHIFEKVAVIHEETNSNL 961
EK +S++VF ++ +D+ N ++ D+IL+++++H+K+ HIFEK +++ S++
Sbjct: 1072 EKHRISELVFSSTNEKDKPINNEVVSK--DRILDEMVRHEKLKHIFEK--ILYHPKKSDM 1127
Query: 962 KKDFF 966
FF
Sbjct: 1128 NTSFF 1132
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 235/707 (33%), Positives = 370/707 (52%), Gaps = 59/707 (8%)
Query: 282 LWIESDYCF--SLIQDNNASPSEPPDLCRGG-KLEHDVFLDEEIGLRCRSCLRVLTEIKY 338
LW E + C S I D++ + + EHD L+EEIG+ CR C V TEIK+
Sbjct: 548 LWREMELCLASSYILDDHEVRVDNEAFHKATCDCEHDYELNEEIGMCCRLCGHVGTEIKH 607
Query: 339 VFPSFATPPRKKKYSYAL-----DDVDPSVSSEFQDRVVGXX-----XXXXXXXXXXXGT 388
V FA R KK++ DD++ ++ + QD V
Sbjct: 608 VSAPFA---RHKKWTTETKQINEDDINTTIVN--QDGVESHTFTIPVASSDMPSAEESDN 662
Query: 389 VWEIIPGVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTR 448
VW +IP +K ++ HQ +AFEFLW NLAG ++ + + GGC++SH PG GKT
Sbjct: 663 VWSLIPQLKRKLHLHQKKAFEFLWKNLAGSVVPAMMDPSSD--KIGGCVVSHTPGAGKTF 720
Query: 449 LTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVM 508
L I FL SY++++P RP+++APK L TW +EF W++ +P H ++ ++ +
Sbjct: 721 LIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCMSKEKTI 780
Query: 509 NLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSD--ERKFLLEV-- 564
S+ V+ + K+ W ++ S+L + Y F ++DS RK++ +V
Sbjct: 781 QFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYMAKVLR 840
Query: 565 --PGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFT 622
PGL+VLDEGH PR++KS + K++ ++ T RI+LSGT FQNNF E +NTLCLARP+F
Sbjct: 841 ESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKFV 900
Query: 623 -----------KCNPNEKGESLRNESKGRWAYLTSSLAKVTDN---GRRSKILQEIRNMI 668
+ N E+ E++ R + +AK D R + L +RNM
Sbjct: 901 HEVLVELDKKFQTNQAEQKAPHLLENRAR-KFFLDIIAKKIDTKVGDERLQGLNMLRNMT 959
Query: 669 CPFVHVHHGTILQ--ESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLE 726
F+ + G+ + LPGL+ + +N T +Q ++ S++ + L+LE
Sbjct: 960 SGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTY----HGYPLELE 1015
Query: 727 YEETLTAIHPAL----------YGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEK 776
TL AIHP L + E + + + + + ++G K F+L L+ ++ EK
Sbjct: 1016 LLITLAAIHPWLVKTTTCCAKFFNPQELLEIEKLKHDAKKGSKVMFVLNLV-FRVVKREK 1074
Query: 777 VLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVML 836
+L+F I P++L E++F WK G ++L L G ++ R I F +P +V+L
Sbjct: 1075 ILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVLL 1134
Query: 837 ASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDED 896
AS AC EGISL ASRV++LD WNPS +QAI+RA+R GQ+K VY Y L++ GT +ED
Sbjct: 1135 ASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEED 1194
Query: 897 KCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILEDLIQHKKI 943
K R K+ +S M+F + Q + ++ D +L ++++ K+
Sbjct: 1195 KYRRTTWKEWVSSMIFSEEFVEDPSQ-WQAEKIEDDVLREIVEEDKV 1240
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 347 bits (889), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 230/678 (33%), Positives = 356/678 (52%), Gaps = 62/678 (9%)
Query: 282 LWIESDYCF--SLIQDNNAS--PSEPPDLCRGGKLEHDVFLDEEIGLRCRSCLRVLTEIK 337
LW E + C S I D+N +E + R G EHD L+EEIG+ CR C V +EIK
Sbjct: 554 LWREMELCLASSYILDDNEVRVDNEAFEKARSG-CEHDYRLEEEIGMCCRLCGHVGSEIK 612
Query: 338 YVFPSFATPPRKKKYSYAL-----DDVDPSVS-SEFQDRVVGXXXXXXXXXXXXXG-TVW 390
V FA KK++ DD+ +S E Q + VW
Sbjct: 613 DVSAPFA---EHKKWTIETKHIEEDDIKTKLSHKEAQTKDFSMISDSSEMLAAEESDNVW 669
Query: 391 EIIPGVKENMYPHQCEAFEFLWTNLAGGI---IHNKLKGKKELPVAGGCLISHAPGTGKT 447
+IP +K ++ HQ AFEFLW N+AG + + + G GGC+ISH+PG GKT
Sbjct: 670 ALIPKLKRKLHVHQRRAFEFLWRNVAGSVEPSLMDPTSGN-----IGGCVISHSPGAGKT 724
Query: 448 RLTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNS--TDCSDNVRD 505
L I FL SY++L+P RP+++APK L TW +EF W++ +P H ++ T C+ ++
Sbjct: 725 FLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYCTFK-QN 783
Query: 506 HVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSD--ERKFLLE 563
+ S+ V+ + K+ W + S+L + Y F ++DS RK++ +
Sbjct: 784 KTVQFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKYMAK 843
Query: 564 V----PGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARP 619
V PGL+VLDEGH PR++KS + K++ ++ T RI+LSGT FQNNF E +NTLCLARP
Sbjct: 844 VLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARP 903
Query: 620 QF-------------TKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRN 666
+F T N+ L N ++ + + + + R + L ++N
Sbjct: 904 KFIHEVLMELDQKFKTNHGVNKAPHLLENRARKLFLDIIAKKIDASVGDERLQGLNMLKN 963
Query: 667 MICPFVHVHHGTILQ--ESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLK 724
M F+ + G+ ++LPGL+ + +N T +Q + ++ ++ L+
Sbjct: 964 MTNGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYP----LE 1019
Query: 725 LEYEETLTAIHPAL----------YGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRN 774
+E + TL AIHP L + E + + + + ++G K F+L LI ++
Sbjct: 1020 VELQITLAAIHPWLVTSSNCCTKFFNPQELSEIGKLKHDAKKGSKVMFVLNLI-FRVVKR 1078
Query: 775 EKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKV 834
EK+L+F I P+++ E++F W+ G ++L L G ++ R I F +P + +V
Sbjct: 1079 EKILIFCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRV 1138
Query: 835 MLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRD 894
+LAS AC EGISL ASRV++LD WNPS +QAI+RA+R GQ+K VY Y L++ GT +
Sbjct: 1139 LLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLE 1198
Query: 895 EDKCCRQAEKDHLSKMVF 912
EDK R K+ +S M+F
Sbjct: 1199 EDKYRRTTWKEWVSCMIF 1216
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 207/665 (31%), Positives = 325/665 (48%), Gaps = 103/665 (15%)
Query: 313 EHDVFLDEEIGLRCRSCLRVLTEIKYVFPSFATPPRKKKYSYA-------LDDVDPSVSS 365
EH L +++G CR C + I + T ++ +YA + D +
Sbjct: 271 EHSFILKDDMGYVCRVCGVIEKSILEIIDVQFTKAKRNTRTYASETRTKRFGESDNELKF 330
Query: 366 EFQDRVVGXXXXXXXXXXXXXGTVWEIIPGVKENMYPHQCEAFEFLWTNLAGGIIHNKLK 425
+ ++G P M PHQ E F+FL +NL
Sbjct: 331 SEEGLMIGGLAAH---------------PTHAAEMKPHQIEGFQFLCSNLVADD------ 369
Query: 426 GKKELPVAGGCLISHAPGTGKTRLTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTW 485
GGC+++HAPG+GKT + I F+QS++ YP+ +P+++ PKGIL TW++EF W
Sbjct: 370 -------PGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLPKGILPTWKKEFVRW 422
Query: 486 KV-DIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISY 544
+V DIP + S + + +++ L W +KSIL + Y
Sbjct: 423 QVEDIPLLDFYSAKAENRAQ---------------------QLSILKQWMEKKSILFLGY 461
Query: 545 NLFEQFTKKDSDE----RKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSG 600
F D+ + ++ LL+VP +++LDEGHTPRN + + +S+++++T ++++LSG
Sbjct: 462 QQFSTIVCDDTTDSLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSG 521
Query: 601 TPFQNNFDELYNTLCLARPQFTKCNPNEKGE---------SLRNESKGRWAYLTS----- 646
T +QN+ E++N L L RP+F K + ++ +R G + + S
Sbjct: 522 TLYQNHVKEVFNILNLVRPKFLKLDTSKSAVKRILAYTPCDVRGRLTGSNSDMASMFNET 581
Query: 647 ---SLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLNPTILQKNV 703
+L K D + K++Q++R M +H + G L E LPGL V LN + Q N
Sbjct: 582 VEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDE-LPGLADFTVVLNLSPKQLNE 640
Query: 704 FEDIERKRSSHLAQGNSNVLKLEYEETLTAIHPALYGLSER--------MNLPRFRLNPE 755
+ + R++ + + L HP L S++ M+ +L+
Sbjct: 641 VKKLRREKRKFKVSAVGSAIYL---------HPKLKVFSDKSDDVSDTTMDEMVEKLDLN 691
Query: 756 EGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDA 815
EGVK KF L LI LC+ EK+LVFSQY+ PLK L WK G +V L G +
Sbjct: 692 EGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSS 751
Query: 816 KLRQTSIKAFND-PDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAY 874
+ R+ S++ FN PD+ K+ S +AC EGISLVGASR+++LDV NPSV RQAI RA+
Sbjct: 752 EQREWSMETFNSSPDA--KIFFGSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAF 809
Query: 875 RLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVF----FNSGRDQHHQNVSSAELG 930
R GQKK V+ Y LI + +E+ +K+ +SKM F + ++ + + E G
Sbjct: 810 RPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMWFEWNEYCGYQNFEVETIDVDEAG 869
Query: 931 DQILE 935
D LE
Sbjct: 870 DTFLE 874
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 209/688 (30%), Positives = 327/688 (47%), Gaps = 108/688 (15%)
Query: 313 EHDVFLDEEIGLRCRSCLRVLTEIKYVFPSFATPPRKKKYSYALDDVDPSVSSEFQDRVV 372
+H ++IG CR C + I+ + ++ + +Y + + S +F
Sbjct: 186 DHSFICKDDIGEVCRVCGLIKKPIESMIEVVFNKQKRSRRTYMREKENGETSRDFSG--- 242
Query: 373 GXXXXXXXXXXXXXGTVWEIIPGVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPV 432
G I P + M PHQ E F FL NLA
Sbjct: 243 -----IQSSHTNILGEKMFIHPWHDQEMRPHQTEGFRFLCNNLAAD-------------E 284
Query: 433 AGGCLISHAPGTGKTRLTIMFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVD-IPF 491
GGC+++HAPG+GKT L I FLQS+M + P+ RP+++ PKGI+ +W+ EF W+V+ IP
Sbjct: 285 PGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGIIESWKREFTLWEVEKIPL 344
Query: 492 HNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLF---- 547
+ S + ++ L W E+SIL + Y F
Sbjct: 345 LDFYSVKAESRKQ---------------------QLKVLGQWIKERSILFLGYQQFTRII 383
Query: 548 --EQFTKKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQN 605
+ F D + LLE P L++LDEGHT RN ++ + S++ ++T ++++L+GT FQN
Sbjct: 384 CDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQN 443
Query: 606 NFDELYNTLCLARPQFTKCNPNEKGESLRNESKGR------------------WAYLTSS 647
N +E++N L L RP+F K P + R SK +A + +
Sbjct: 444 NVEEVFNILDLVRPKFLK-RPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGTFFAAVELT 502
Query: 648 LAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDI 707
L + T+ ++ +++++R M +H H LPGL + V LN + +Q++ + +
Sbjct: 503 LQRSTNFSAKASLIKDLREMTRNILHYHKAD-FSGLLPGLSEFTVMLNLSSIQRDEVKGL 561
Query: 708 ERKRSSHLAQGNSNVLKLEYEETLTA---IHPALYGLSER----------------MNLP 748
+ ++L + +L A IHP L E M L
Sbjct: 562 RK-------------MELFKQISLGAALYIHPKLKSFLEENPSNGEKGFSDNNTTVMKLD 608
Query: 749 RF--RLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDV 806
+ ++N +GVK KF L L+ LCE EK+LVFSQYI P+K L + + W+ G ++
Sbjct: 609 KMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMSSMKGWRLGKEM 668
Query: 807 LQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVE 866
+ G + R+ S++ FN+ KV S +AC EGISLVGASRV++LDV NPSV
Sbjct: 669 FTITGDSSNEQREWSMERFNNS-LEAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVT 727
Query: 867 RQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVF---FNSGR-DQHHQ 922
+QA++RAYR GQK+ VY Y L+ A + +E+ K+ +SKM F SGR D +
Sbjct: 728 QQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFEWNVGSGREDFGFR 787
Query: 923 NVSSAELGDQILEDLIQHKKIGHIFEKV 950
+ + GD LE + I ++ KV
Sbjct: 788 AIDADHSGDAFLETTKMKEDIKCLYTKV 815
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 143/581 (24%), Positives = 244/581 (41%), Gaps = 100/581 (17%)
Query: 400 MYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM- 458
+ PHQ E +F++ ++G L G + GC+++ G GKT +I L + +
Sbjct: 180 LRPHQREGVQFMFDCVSG------LHGSANI---NGCILADDMGLGKTLQSITLLYTLLC 230
Query: 459 ---ELYPKCR-PIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGR 514
+ P + II+ P ++ WE E K W D + ++ RD V++ +
Sbjct: 231 QGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGD----RIQLIALCESTRDDVLSGID-- 284
Query: 515 NVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGH 574
S+ R RS +L ISY F + K E L++ DE H
Sbjct: 285 --------SFTRP------RSALQVLIISYETFRMHSSKFCQS-----ESCDLLICDEAH 325
Query: 575 TPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGES-- 632
+N ++L ++++ + +R++LSGTP QN+ +E + A FT NP G++
Sbjct: 326 RLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFF-----AMVNFT--NPGSLGDAAH 378
Query: 633 LRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVV 692
R+ + A + + E+ + + F+ +L LP VV
Sbjct: 379 FRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVV 438
Query: 693 TLNPTILQKNVF------EDIERKRSSHLAQGN-----------SNVLKLEYEETLTAIH 735
T LQ ++ ++++R + + Q N KL Y+ T+ + +
Sbjct: 439 CCKMTTLQSTLYNHFISSKNLKRALADNAKQTKVLAYITALKKLCNHPKLIYD-TIKSGN 497
Query: 736 PALYGLSERMNL-PRFRLNPEEG-----------------VKTKFLLELIRLCEIRNEKV 777
P G + P + G V ++ L L R + +++
Sbjct: 498 PGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRKTD---DRI 554
Query: 778 LVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLA 837
++ S Y L L A C + L+L G RQ + NDP + L
Sbjct: 555 VLVSNYTQTLDLFAQ-----LCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLL 609
Query: 838 STRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDK 897
S++A G++L+GA+R+VL D WNP+ ++QA +R +R GQKK VY Y ++ GT +E
Sbjct: 610 SSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKV 669
Query: 898 CCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQI-LEDL 937
RQ K+ L K++ QH Q +S G+ + EDL
Sbjct: 670 YQRQMSKEGLQKVI-------QHEQTDNSTRQGNLLSTEDL 703
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 145/579 (25%), Positives = 242/579 (41%), Gaps = 98/579 (16%)
Query: 400 MYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM- 458
+ PHQ E +F++ ++G L G + GC+++ G GKT +I L + +
Sbjct: 180 LRPHQREGVQFMFDCVSG------LHGSANI---NGCILADDMGLGKTLQSITLLYTLLC 230
Query: 459 ---ELYPKCR-PIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGR 514
+ P + II+ P ++ WE E K W D + ++ RD V++ +
Sbjct: 231 QGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGD----RIQLIALCESTRDDVLSGID-- 284
Query: 515 NVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGH 574
S+ R RS +L ISY F + K E L++ DE H
Sbjct: 285 --------SFTRP------RSALQVLIISYETFRMHSSKFCQS-----ESCDLLICDEAH 325
Query: 575 TPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGES-- 632
+N ++L ++++ + +R++LSGTP QN+ +E + A FT NP G++
Sbjct: 326 RLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFF-----AMVNFT--NPGSLGDAAH 378
Query: 633 LRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVV 692
R+ + A + + E+ + + F+ +L LP VV
Sbjct: 379 FRHYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVV 438
Query: 693 TLNPTILQK--NVFEDIERKRSSHLAQGNSNVL-------------KLEYEETLTAIHPA 737
T LQ N ++ KR+ + VL KL Y+ T+ + +P
Sbjct: 439 CCKMTTLQTTYNGCLCMQLKRALADNAKQTKVLAYITALKKLCNHPKLIYD-TIKSGNPG 497
Query: 738 LYGLSERMNL-PRFRLNPEEG-----------------VKTKFLLELIRLCEIRNEKVLV 779
G + P + G V ++ L L R + +++++
Sbjct: 498 TVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRKTD---DRIVL 554
Query: 780 FSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLAST 839
S Y L L A C + L+L G RQ + NDP + L S+
Sbjct: 555 VSNYTQTLDLFAQ-----LCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSS 609
Query: 840 RACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCC 899
+A G++L+GA+R+VL D WNP+ ++QA +R +R GQKK VY Y ++ GT +E
Sbjct: 610 KAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQ 669
Query: 900 RQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQI-LEDL 937
RQ K+ L K++ QH Q +S G+ + EDL
Sbjct: 670 RQMSKEGLQKVI-------QHEQTDNSTRQGNLLSTEDL 701
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/552 (25%), Positives = 237/552 (42%), Gaps = 81/552 (14%)
Query: 400 MYPHQCEAFEFL---WTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQS 456
++P+Q E FL W+ I+ +++ G GKT +I L S
Sbjct: 273 LHPYQLEGLNFLRFSWSKQTHVILADEM------------------GLGKTIQSIALLAS 314
Query: 457 YME--LYPKCRPIIIAPKGILGTWEEEFKTW--KVDIPFHNMNSTDCSDNVRDHVMNLVS 512
E L P ++IAP L WE EF TW ++++ + + +R+H L S
Sbjct: 315 LFEENLIPH---LVIAPLSTLRNWEREFATWAPQMNVVMY-FGTAQARAVIREHEFYL-S 369
Query: 513 GRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDE 572
S ++ R + +L SY + DS K + +++DE
Sbjct: 370 KDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMI----NLDSAVLKPI--KWECMIVDE 423
Query: 573 GHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGES 632
GH +N S ++ S+++ + RI+L+GTP QNN DEL+ +
Sbjct: 424 GHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFL--------------- 468
Query: 633 LRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVV 692
G++ L + D + +I + M+ P + + + +P ++L++
Sbjct: 469 ----DAGKFGSLEEFQEEFKDINQEEQI-SRLHKMLAPHLLRRVKKDVMKDMPPKKELIL 523
Query: 693 TLNPTILQKNVFEDIERKRSSHL-----AQGNSNVLKLEYEET------LTAIHPALYGL 741
++ + LQK ++ I + L AQ + N + +E + L + P ++
Sbjct: 524 RVDLSSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDA 583
Query: 742 SERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWK 801
+E F+ E K + L +++ + + +VL+++Q+ L LL +C
Sbjct: 584 NEA-----FKQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLED-----YCTH 633
Query: 802 EGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVW 861
+ ++ GKV RQ I FN +SN L STRA GI+L A V++ D W
Sbjct: 634 KKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDW 693
Query: 862 NPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHH 921
NP + QA++RA+RLGQ V Y LI GT +E +K L +V G+ +
Sbjct: 694 NPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV---GKLK-T 749
Query: 922 QNVSSAELGDQI 933
QN++ EL D I
Sbjct: 750 QNINQEELDDII 761
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 213/488 (43%), Gaps = 103/488 (21%)
Query: 435 GCLISHAPGTGKTRLTIMFLQSYME--LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFH 492
+++ G GKT +I FL S E L P +++AP + WE EF TW P
Sbjct: 245 NVILADEMGLGKTIQSIAFLASLFEENLSPH---LVVAPLSTIRNWEREFATWA---PHM 298
Query: 493 NM----NSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFE 548
N+ ++ D + +H GR VL++ M GIS
Sbjct: 299 NVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHP----------GISVLSPI 348
Query: 549 QFTKKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFD 608
++T +++DEGH +N KS ++ S+S+ + ++L+GTP QNN +
Sbjct: 349 KWT---------------CMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLN 393
Query: 609 ELYNTL-CLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNM 667
EL+ + L +F SL K D + +I + M
Sbjct: 394 ELFALMHFLDADKF------------------------GSLEKFQDINKEEQI-SRLHQM 428
Query: 668 ICP-FVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDI--------ERKRSSHLAQG 718
+ P + +L++ +P ++L++ ++ + QK V++ + +KR + +
Sbjct: 429 LAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKI--- 485
Query: 719 NSNVLKLEYEETLTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLE-----------LI 767
SNVL ++ + + HP L E PRF E K LLE ++
Sbjct: 486 -SNVL-MKLRQVCS--HPYLLPDFE----PRFEDANEAFTK---LLEASGKLQLLDKMMV 534
Query: 768 RLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND 827
+L E + +VL+++Q+ L LL E F +K + ++ GK+ RQ I FN
Sbjct: 535 KLKE-QGHRVLIYTQFQHTLYLL----EDYFTFK-NWNYERIDGKISGPERQVRIDRFNA 588
Query: 828 PDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHL 887
+SN L STRA GI+L A V++ D WNP + QA++R +RLGQ V Y L
Sbjct: 589 ENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRL 648
Query: 888 ITAGTRDE 895
I GT +E
Sbjct: 649 IHKGTVEE 656
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 131/487 (26%), Positives = 212/487 (43%), Gaps = 101/487 (20%)
Query: 435 GCLISHAPGTGKTRLTIMFLQSYME--LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFH 492
+++ G GKT +I FL S E L P +++AP + WE EF TW P
Sbjct: 204 NVILADEMGLGKTIQSIAFLASLFEENLSPH---LVVAPLSTIRNWEREFATWA---PHM 257
Query: 493 NM----NSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFE 548
N+ ++ D + +H GR VL++ M GIS
Sbjct: 258 NVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHP----------GISVLSPI 307
Query: 549 QFTKKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFD 608
++T +++DEGH +N KS ++ S+S+ + ++L+GTP QNN +
Sbjct: 308 KWT---------------CMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLN 352
Query: 609 ELYNTLCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMI 668
EL+ A F + SL K D + +I + M+
Sbjct: 353 ELF-----ALMHFLDADK------------------FGSLEKFQDINKEEQI-SRLHQML 388
Query: 669 CP-FVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDI--------ERKRSSHLAQGN 719
P + +L++ +P ++L++ ++ + QK V++ + +KR + +
Sbjct: 389 APHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKI---- 444
Query: 720 SNVLKLEYEETLTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLE-----------LIR 768
SNVL ++ + + HP L E PRF E K LLE +++
Sbjct: 445 SNVL-MKLRQVCS--HPYLLPDFE----PRFEDANEAFTK---LLEASGKLQLLDKMMVK 494
Query: 769 LCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDP 828
L E + +VL+++Q+ L LL E F +K + ++ GK+ RQ I FN
Sbjct: 495 LKE-QGHRVLIYTQFQHTLYLL----EDYFTFK-NWNYERIDGKISGPERQVRIDRFNAE 548
Query: 829 DSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLI 888
+SN L STRA GI+L A V++ D WNP + QA++R +RLGQ V Y LI
Sbjct: 549 NSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLI 608
Query: 889 TAGTRDE 895
GT +E
Sbjct: 609 HKGTVEE 615
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 219/529 (41%), Gaps = 50/529 (9%)
Query: 400 MYPHQCEAFEFLWT---NLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQS 456
++ +Q ++LW AGGII +++ G GKT + FL S
Sbjct: 385 LFDYQRVGVQWLWELHCQRAGGIIGDEM------------------GLGKTIQVLSFLGS 426
Query: 457 --YMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGR 514
+ ++Y III P +L W E + W D ++ + D+ S
Sbjct: 427 LHFSKMYKPS--IIICPVTLLRQWRREAQKWYPDFHVEILHDS-AQDSGHGKGQGKASES 483
Query: 515 NVSKHVLISYCRMAKLYYWRSEKSIL--------GISYNLFEQFTKKDSDERKFLLEVPG 566
+ + K + S+L G+ +EQ + K L G
Sbjct: 484 DYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGE---KLLNIEWG 540
Query: 567 LVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNP 626
VLDEGH RN S I +++T RII++G P QN EL++ P P
Sbjct: 541 YAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLP 600
Query: 627 NEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPG 686
+ E + G Y +S +V+ R + +L R++I P++ + L
Sbjct: 601 VFEAEFSVPITVG--GYANASPLQVSTAYRCAVVL---RDLIMPYLLRRMKADVNAHLTK 655
Query: 687 LRKLVVTLNPTILQKNVFED-IERKRSSHLAQGNSNVLKLEYEETLTAIHPALYGLSERM 745
+ V+ + T+ Q++ + + + GN N L HP L
Sbjct: 656 KTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHPDLLEREHSH 715
Query: 746 NLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTD 805
P + NPE K K + E++++ + + +VL+FSQ L +L S F
Sbjct: 716 QNPDYG-NPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILES-----FLVANEYS 769
Query: 806 VLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSV 865
++ G K R I FN+ + ++ V + +T+ G +L GA+RV++ D WNPS
Sbjct: 770 YRRMDGLTPVKQRMALIDEFNNSE-DMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSN 828
Query: 866 ERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFN 914
+ QA RA+R+GQKK V Y LIT GT +E RQ K L+ + N
Sbjct: 829 DMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 877
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/570 (24%), Positives = 226/570 (39%), Gaps = 114/570 (20%)
Query: 393 IPG-VKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTI 451
+PG + +YPHQ E +LW+ +H + KG ++ G GKT
Sbjct: 369 LPGKIATMLYPHQREGLNWLWS------LHTQGKG---------GILGDDMGLGKTMQIC 413
Query: 452 MFLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLV 511
FL R +++APK +L W +E T S R++
Sbjct: 414 SFLAGLFHSKLIKRALVVAPKTLLPHWMKELAT------------VGLSQMTREYYGTST 461
Query: 512 SGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTK-----------KDSDERKF 560
R H ++ K IL +Y++ TK D D K+
Sbjct: 462 KAREYDLHHILQ------------GKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKW 509
Query: 561 LLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQ 620
++LDEGH +N + KS+ EI ++ RII+SGTP QNN EL+ + P
Sbjct: 510 -----DYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPG 564
Query: 621 FTK----CNPNEKGESLRNESKG---RWAYLTSSLAK------------------VTDNG 655
N + LR K R + S++AK D+G
Sbjct: 565 LLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDG 624
Query: 656 RRSKILQE------IRNMICP---FVHVHHGTILQESLPGLRKLVVTL------NPTILQ 700
SK+ ++ +R C + + I+ + G +T+ +P +L
Sbjct: 625 ATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 684
Query: 701 KNVFEDIERKRSSHLAQGNSNVLKLEYEETLTAIHPALYGLSERMNLPRFRL-NPEEGVK 759
K ED+ S L Q EE A A++ +++ ++ F+ N K
Sbjct: 685 KRAAEDVLEGMDSTLTQ----------EEAGVAERLAMH-IADNVDTDDFQTKNDSISCK 733
Query: 760 TKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQ 819
F++ L+ +VL+FSQ L L+ L G L++ G A R
Sbjct: 734 LSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLT-----SNGYSFLRIDGTTKAPDRL 788
Query: 820 TSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQK 879
+++ F + + L +++ G++L A RV+++D WNPS + Q++ RAYR+GQ
Sbjct: 789 KTVEEFQEGHV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQT 847
Query: 880 KFVYTYHLITAGTRDEDKCCRQAEKDHLSK 909
K V Y L+T+ T +E +Q K L K
Sbjct: 848 KDVIVYRLMTSATVEEKIYRKQVYKGGLFK 877
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 217/505 (42%), Gaps = 72/505 (14%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP--IIIAPKGILGTWEEEFKTW-KVDIPFHN 493
+++ G GKT TI L +Y+ Y +++APK LG W E + + V
Sbjct: 211 ILADEMGLGKTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKF 269
Query: 494 MNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKK 553
+ + + ++R+ + LV+G+ I FE K+
Sbjct: 270 LGNPEERRHIREDL--LVAGK-------------------------FDICVTSFEMAIKE 302
Query: 554 DSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNT 613
+ R+F +++DE H +N SL+ K++ T R++++GTP QNN EL+
Sbjct: 303 KTALRRFSWRY---IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 359
Query: 614 LCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
L P+ E+ W +++ + +++Q++ ++ PF+
Sbjct: 360 LNFLLPEIFSSA----------ETFDEWF-------QISGENDQQEVVQQLHKVLRPFLL 402
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSN--VLKLEYEETL 731
+ +++ LP ++ ++ + + +QK ++ + +K + G +L + +
Sbjct: 403 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRK 462
Query: 732 TAIHPALYGLSERMNLPRF----RLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPL 787
HP L+ +E P + L G L +L E R+ +VL+FSQ L
Sbjct: 463 CCNHPYLFQGAEPG--PPYTTGDHLITNAGKMVLLDKLLPKLKE-RDSRVLIFSQMTRLL 519
Query: 788 KLLASQLEH---LFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYE 844
+L L + L+C ++ G R SI+A+N P S V L STRA
Sbjct: 520 DILEDYLMYRGYLYC--------RIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGL 571
Query: 845 GISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEK 904
GI+L A V+L D WNP V+ QA RA+R+GQKK V + T +E R +K
Sbjct: 572 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKK 631
Query: 905 DHLSKMVFFNSGRDQHHQNVSSAEL 929
L +V GR + V+ EL
Sbjct: 632 LALDALV-IQQGRLAEQKTVNKDEL 655
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 217/505 (42%), Gaps = 72/505 (14%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP--IIIAPKGILGTWEEEFKTW-KVDIPFHN 493
+++ G GKT TI L +Y+ Y +++APK LG W E + + V
Sbjct: 211 ILADEMGLGKTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKF 269
Query: 494 MNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKK 553
+ + + ++R+ + LV+G+ I FE K+
Sbjct: 270 LGNPEERRHIREDL--LVAGK-------------------------FDICVTSFEMAIKE 302
Query: 554 DSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNT 613
+ R+F +++DE H +N SL+ K++ T R++++GTP QNN EL+
Sbjct: 303 KTALRRFSWRY---IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 359
Query: 614 LCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
L P+ E+ W +++ + +++Q++ ++ PF+
Sbjct: 360 LNFLLPEIFSSA----------ETFDEWF-------QISGENDQQEVVQQLHKVLRPFLL 402
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSN--VLKLEYEETL 731
+ +++ LP ++ ++ + + +QK ++ + +K + G +L + +
Sbjct: 403 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRK 462
Query: 732 TAIHPALYGLSERMNLPRF----RLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPL 787
HP L+ +E P + L G L +L E R+ +VL+FSQ L
Sbjct: 463 CCNHPYLFQGAEPG--PPYTTGDHLITNAGKMVLLDKLLPKLKE-RDSRVLIFSQMTRLL 519
Query: 788 KLLASQLEH---LFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYE 844
+L L + L+C ++ G R SI+A+N P S V L STRA
Sbjct: 520 DILEDYLMYRGYLYC--------RIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGL 571
Query: 845 GISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEK 904
GI+L A V+L D WNP V+ QA RA+R+GQKK V + T +E R +K
Sbjct: 572 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKK 631
Query: 905 DHLSKMVFFNSGRDQHHQNVSSAEL 929
L +V GR + V+ EL
Sbjct: 632 LALDALV-IQQGRLAEQKTVNKDEL 655
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 217/505 (42%), Gaps = 72/505 (14%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP--IIIAPKGILGTWEEEFKTW-KVDIPFHN 493
+++ G GKT TI L +Y+ Y +++APK LG W E + + V
Sbjct: 211 ILADEMGLGKTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKF 269
Query: 494 MNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKK 553
+ + + ++R+ + LV+G+ I FE K+
Sbjct: 270 LGNPEERRHIREDL--LVAGK-------------------------FDICVTSFEMAIKE 302
Query: 554 DSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNT 613
+ R+F +++DE H +N SL+ K++ T R++++GTP QNN EL+
Sbjct: 303 KTALRRFSWRY---IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 359
Query: 614 LCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
L P+ E+ W +++ + +++Q++ ++ PF+
Sbjct: 360 LNFLLPEIFSSA----------ETFDEWF-------QISGENDQQEVVQQLHKVLRPFLL 402
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSN--VLKLEYEETL 731
+ +++ LP ++ ++ + + +QK ++ + +K + G +L + +
Sbjct: 403 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEAVNAGGERKRLLNIAMQLRK 462
Query: 732 TAIHPALYGLSERMNLPRF----RLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPL 787
HP L+ +E P + L G L +L E R+ +VL+FSQ L
Sbjct: 463 CCNHPYLFQGAEPG--PPYTTGDHLITNAGKMVLLDKLLPKLKE-RDSRVLIFSQMTRLL 519
Query: 788 KLLASQLEH---LFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYE 844
+L L + L+C ++ G R SI+A+N P S V L STRA
Sbjct: 520 DILEDYLMYRGYLYC--------RIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGL 571
Query: 845 GISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEK 904
GI+L A V+L D WNP V+ QA RA+R+GQKK V + T +E R +K
Sbjct: 572 GINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKK 631
Query: 905 DHLSKMVFFNSGRDQHHQNVSSAEL 929
L +V GR + V+ EL
Sbjct: 632 LALDALV-IQQGRLAEQKTVNKDEL 655
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/468 (25%), Positives = 214/468 (45%), Gaps = 57/468 (12%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMN 495
+++ G GKT TI + +E P +I+APK +L WE EF W P +
Sbjct: 408 ILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALW---APSISAF 464
Query: 496 STDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDS 555
D S R + ++G +VLI++ Y+L +
Sbjct: 465 LYDGSKEKRTEIRARIAGGKF--NVLITH-------------------YDLIMR------ 497
Query: 556 DERKFLLEVP-GLVVLDEGHTPRNSKSLIWKSV-SEIRTTKRIILSGTPFQNNFDELYNT 613
++ FL ++ +++DEGH +N + + K++ + R +R++L+GTP QN+ EL++
Sbjct: 498 -DKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSL 556
Query: 614 LCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
L P N E N + A +TD I+ + ++I PF+
Sbjct: 557 LNFLLPHI--FNSIHNFEEWFNT-----PFAECGSASLTDE-EELLIINRLHHVIRPFLL 608
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIER--KRSSHLAQGNSNVLK-LEYEET 730
+ +++ LPG ++++ + + QK ++ + + H G S L+ L +
Sbjct: 609 RRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
Query: 731 LTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQY---IDPL 787
HP L+ ++ + + G K + L L+ + ++L+FSQ ID L
Sbjct: 669 KCCNHPYLFVGADYNMCKKPEIVRASG-KFELLDRLLPKLKKAGHRILLFSQMTRLIDLL 727
Query: 788 KLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGIS 847
++ S ++++ L+L G R +K FN+PDS + L STRA G++
Sbjct: 728 EIYLSLNDYMY--------LRLDGSTKTDQRGILLKQFNEPDSPYFMFLLSTRAGGLGLN 779
Query: 848 LVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
L A +++ D WNP +++QA RA+R+GQKK V + L++ G+ +E
Sbjct: 780 LQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEE 827
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 230/493 (46%), Gaps = 73/493 (14%)
Query: 436 CLISHAPGTGKTRLTIM---FLQSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFH 492
+++ G GKT ++ FLQ+ ++ +++ P L W +EF+ W +P
Sbjct: 646 VILADEMGLGKTVQSVSMLGFLQNTQQIPGPF--LVVVPLSTLANWAKEFRKW---LPGM 700
Query: 493 NMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSI-LGISYNLFEQFT 551
N+ + G S+ V C+ + Y +EK + I +N
Sbjct: 701 NII--------------VYVGTRASREV----CQQYEFY---NEKKVGRPIKFNALLTTY 739
Query: 552 KKDSDERKFLLEVPGL-VVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDEL 610
+ ++ L ++ + +++DE H +NS++ ++ ++ E T +++++GTP QN+ +EL
Sbjct: 740 EVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEEL 799
Query: 611 YNTLCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICP 670
+ L P K N +E E+ +N S ++ S LA + R + + I++
Sbjct: 800 WALLHFLDPGKFK-NKDEFVENYKNLS----SFNESELANLHLELRPHILRRVIKD---- 850
Query: 671 FVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQG----NSNVLKLE 726
+++SLP + ++ + + LQK ++ I + L +G ++L +
Sbjct: 851 ---------VEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIV 901
Query: 727 YEETLTAIHPAL-------YG--LSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKV 777
E HP L YG +++ L + L+ + V LL +RL E ++ +V
Sbjct: 902 VELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLL--VRLRETKH-RV 958
Query: 778 LVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLA 837
L+FSQ + L +LA L G +L G A+LRQ ++ FN P S+ L
Sbjct: 959 LIFSQMVRMLDILAEYLSL-----RGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLL 1013
Query: 838 STRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDK 897
STRA GI+L A VV+ D WNP + QA+SRA+R+GQ++ V Y +T+ + +E+
Sbjct: 1014 STRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEI 1073
Query: 898 CCRQAEK---DHL 907
R K DHL
Sbjct: 1074 LERAKRKMVLDHL 1086
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/501 (24%), Positives = 213/501 (42%), Gaps = 64/501 (12%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTW-KVDIPFHNM 494
+++ G GKT TI L E P +++APK LG W E + + V +
Sbjct: 216 ILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFL 275
Query: 495 NSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKD 554
+ + ++R+ + LV+G+ I FE K+
Sbjct: 276 GNPEERRHIREEL--LVAGK-------------------------FDICVTSFEMAIKEK 308
Query: 555 SDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTL 614
+ R+F +++DE H +N SL+ K++ T R++++GTP QNN EL+ L
Sbjct: 309 TTLRRFSWRY---IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 365
Query: 615 CLARPQ-FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
P+ F+ E+ W +++ + +++Q++ ++ PF+
Sbjct: 366 NFLLPEVFSSA-----------ETFDEWF-------QISGENDQQEVVQQLHKVLRPFLL 407
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSN--VLKLEYEETL 731
+ +++ LP ++ ++ + + +QK ++ + +K + G +L + +
Sbjct: 408 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLRK 467
Query: 732 TAIHPALYGLSERMNLPRFRLNPE---EGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLK 788
HP L+ +E P + K L +L+ + R+ +VL+FSQ L
Sbjct: 468 CCNHPYLFQGAEPG--PPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLD 525
Query: 789 LLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISL 848
+L L + G ++ G R SI+A+N P S V L STRA GI+L
Sbjct: 526 ILEDYLMY-----RGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINL 580
Query: 849 VGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLS 908
A V+L D WNP V+ QA RA+R+GQKK V + T E K +A K
Sbjct: 581 ATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAI-EAKVIERAYKKLAL 639
Query: 909 KMVFFNSGRDQHHQNVSSAEL 929
+ GR + V+ EL
Sbjct: 640 DALVIQQGRLAEQKTVNKDEL 660
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/502 (24%), Positives = 215/502 (42%), Gaps = 66/502 (13%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP--IIIAPKGILGTWEEEFKTW-KVDIPFHN 493
+++ G GKT TI L +Y+ Y +++APK LG W E + + V
Sbjct: 216 ILADEMGLGKTLQTISLL-AYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKF 274
Query: 494 MNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKK 553
+ + + ++R+ + LV+G+ I FE K+
Sbjct: 275 LGNPEERRHIREEL--LVAGK-------------------------FDICVTSFEMAIKE 307
Query: 554 DSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNT 613
+ R+F +++DE H +N SL+ K++ T R++++GTP QNN EL+
Sbjct: 308 KTTLRRFSWRY---IIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWAL 364
Query: 614 LCLARPQ-FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFV 672
L P+ F+ E+ W +++ + +++Q++ ++ PF+
Sbjct: 365 LNFLLPEVFSSA-----------ETFDEWF-------QISGENDQQEVVQQLHKVLRPFL 406
Query: 673 HVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSN--VLKLEYEET 730
+ +++ LP ++ ++ + + +QK ++ + +K + G +L + +
Sbjct: 407 LRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRLLNIAMQLR 466
Query: 731 LTAIHPALYGLSERMNLPRFRLNPE---EGVKTKFLLELIRLCEIRNEKVLVFSQYIDPL 787
HP L+ +E P + K L +L+ + R+ +VL+FSQ L
Sbjct: 467 KCCNHPYLFQGAEPG--PPYTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLL 524
Query: 788 KLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGIS 847
+L L + G ++ G R SI+A+N P S V L STRA GI+
Sbjct: 525 DILEDYLMY-----RGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGIN 579
Query: 848 LVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHL 907
L A V+L D WNP V+ QA RA+R+GQKK V + T E K +A K
Sbjct: 580 LATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAI-EAKVIERAYKKLA 638
Query: 908 SKMVFFNSGRDQHHQNVSSAEL 929
+ GR + V+ EL
Sbjct: 639 LDALVIQQGRLAEQKTVNKDEL 660
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 179/384 (46%), Gaps = 35/384 (9%)
Query: 555 SDERKFLLEVP-GLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNT 613
+D ++ L P VV+DEGH +N K + + + ++ +++L+GTP QNN EL++
Sbjct: 316 NDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSL 375
Query: 614 LCLARPQ-FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFV 672
L P FT + E ++K + K + RR++++ ++ ++ PF+
Sbjct: 376 LNFILPDIFTSHDEFESWFDFSEKNK-------NEATKEEEEKRRAQVVSKLHGILRPFI 428
Query: 673 HVHHGTILQESLPGLRKLVVTLNPTILQKNVFED-IERKRSSHLAQ---------GNSNV 722
++ SLP +++++ T QK E + +HL + G N
Sbjct: 429 LRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNN 488
Query: 723 LKLEYEETLTAIHPALYGLSERMNLPRFRLNPEE--GVKTKFLLELIRLCE--IRNEKVL 778
L ++ + HP L L +++ EE G KF L L N KVL
Sbjct: 489 LVIQLRKNCN--HPDL--LQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVL 544
Query: 779 VFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLAS 838
+FSQ+ L ++ ++ F K G +V ++ G V R+ IK F+D S+ + L S
Sbjct: 545 IFSQWTKLLDIM----DYYFSEK-GFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLS 599
Query: 839 TRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKC 898
TRA GI+L A +L D WNP ++ QA+ R +R+GQ K V+ Y L TA + +
Sbjct: 600 TRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVL 659
Query: 899 CRQAEKDHLSKMVFFNSGRDQHHQ 922
R K L +V G+ Q HQ
Sbjct: 660 KRAYSKLKLEHVVI---GQGQFHQ 680
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/513 (23%), Positives = 225/513 (43%), Gaps = 62/513 (12%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMN 495
+++ G GKT TI + +E P +I+APK +L W EF TW +P
Sbjct: 425 ILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATW---VPSIAAF 481
Query: 496 STDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDS 555
D R + ++G +VLI++ Y+L +
Sbjct: 482 LYDGRLEERKAIREKIAGEG-KFNVLITH-------------------YDLIMR------ 515
Query: 556 DERKFLLEVPGL-VVLDEGHTPRNSKSLIWKSV-SEIRTTKRIILSGTPFQNNFDELYNT 613
++ FL ++ +++DEGH +N +S + K++ + R +R++L+GTP QN+ EL++
Sbjct: 516 -DKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSL 574
Query: 614 LCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
L P N + E N + +TD I+ + ++I PF+
Sbjct: 575 LNFLLPHI--FNSVQNFEEWFNA-----PFADRGNVSLTDE-EELLIIHRLHHVIRPFIL 626
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNS---NVLKLEYEET 730
+++ LPG ++++ + + QK ++ + L G+ ++ L +
Sbjct: 627 RRKKDEVEKFLPGKTQVILKCDMSAWQKVYYKQVTDMGRVGLQTGSGKSKSLQNLTMQLR 686
Query: 731 LTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLL 790
HP L+ + + + G K + L L+ ++L+FSQ + +L
Sbjct: 687 KCCNHPYLFVGGDYNMWKKPEIVRASG-KFELLDRLLPKLRKAGHRILLFSQMTRLIDVL 745
Query: 791 ASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVG 850
++ L+L G R +K FN+PDS + L STRA G++L
Sbjct: 746 -----EIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNEPDSPYFMFLLSTRAGGLGLNLQT 800
Query: 851 ASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKM 910
A V++ D WNP +++QA RA+R+GQKK V + L++ G+ +E R +K +
Sbjct: 801 ADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAK 860
Query: 911 V----FFNSGRDQHHQNVSSAELGDQILEDLIQ 939
V FN+ S+A+ ++LE++++
Sbjct: 861 VIQAGLFNT--------TSTAQDRREMLEEIMR 885
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 759 KTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHL-------FCWKEGTDVLQLHG 811
K LL+++ + +K LVFSQ I L L+ L + WK+G D ++ G
Sbjct: 1116 KMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDG 1175
Query: 812 KVDAKLRQTSIKAFNDPDSN-VKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAI 870
K ++ RQ + FN+PD+ VK L STRA GI+L A+RV+++D WNP+ + QAI
Sbjct: 1176 KTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAI 1235
Query: 871 SRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAEL 929
RA+R GQKK V+ Y L+ GT +E RQ K+ L+ V R Q H+ +S E+
Sbjct: 1236 FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV---DRQQVHRTISKEEM 1291
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 403 HQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM---E 459
HQ F+W N+ I K G K L GC+++H G GKT I FL + M +
Sbjct: 722 HQVTGIRFMWENIIQSISRVK-SGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRCVD 776
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKH 519
L K +I+ P +L W EF+ W +P +R ++ VS
Sbjct: 777 LGLKT-ALIVTPVNVLHNWRSEFEKW---MPSE-------VKPLRIFMLGDVSRER---- 821
Query: 520 VLISYCRMAKLYYWRSEKSILGISYNLFEQFT----KKDSDERK----FLLEVPGLVVLD 571
R L WR + + + Y F + KD + + L + P ++V D
Sbjct: 822 ------RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCD 875
Query: 572 EGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGE 631
E H +N+K+ +++ +++ +RI L+G+P QNN E Y + R F +P +
Sbjct: 876 EAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNR 935
Query: 632 SLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLV 691
G+ ++ S+ V +RS IL E + FV ++++ LP V
Sbjct: 936 FQNPIENGQ--HMNSTAEDVKIMNQRSHILYE---QLKGFVQRMDMNVVKKDLPPKTVFV 990
Query: 692 VTLNPTILQKNVFE 705
+++ + LQ+ +++
Sbjct: 991 ISVKLSPLQRILYQ 1004
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 759 KTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHL-------FCWKEGTDVLQLHG 811
K LL+++ + +K LVFSQ I L L+ L + WK+G D ++ G
Sbjct: 1116 KMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDG 1175
Query: 812 KVDAKLRQTSIKAFNDPDSN-VKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAI 870
K ++ RQ + FN+PD+ VK L STRA GI+L A+RV+++D WNP+ + QAI
Sbjct: 1176 KTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAI 1235
Query: 871 SRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAEL 929
RA+R GQKK V+ Y L+ GT +E RQ K+ L+ V R Q H+ +S E+
Sbjct: 1236 FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV---DRQQVHRTISKEEM 1291
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 403 HQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM---E 459
HQ F+W N+ I K G K L GC+++H G GKT I FL + M +
Sbjct: 722 HQVTGIRFMWENIIQSISRVK-SGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRCVD 776
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKH 519
L K +I+ P +L W EF+ W +P +R ++ VS
Sbjct: 777 LGLKT-ALIVTPVNVLHNWRSEFEKW---MPSE-------VKPLRIFMLGDVSRER---- 821
Query: 520 VLISYCRMAKLYYWRSEKSILGISYNLFEQFT----KKDSDERK----FLLEVPGLVVLD 571
R L WR + + + Y F + KD + + L + P ++V D
Sbjct: 822 ------RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCD 875
Query: 572 EGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGE 631
E H +N+K+ +++ +++ +RI L+G+P QNN E Y + R F +P +
Sbjct: 876 EAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNR 935
Query: 632 SLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLV 691
G+ ++ S+ V +RS IL E + FV ++++ LP V
Sbjct: 936 FQNPIENGQ--HMNSTAEDVKIMNQRSHILYE---QLKGFVQRMDMNVVKKDLPPKTVFV 990
Query: 692 VTLNPTILQKNVFE 705
+++ + LQ+ +++
Sbjct: 991 ISVKLSPLQRILYQ 1004
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 759 KTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHL-------FCWKEGTDVLQLHG 811
K LL+++ + +K LVFSQ I L L+ L + WK+G D ++ G
Sbjct: 1116 KMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDG 1175
Query: 812 KVDAKLRQTSIKAFNDPDSN-VKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAI 870
K ++ RQ + FN+PD+ VK L STRA GI+L A+RV+++D WNP+ + QAI
Sbjct: 1176 KTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAI 1235
Query: 871 SRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAEL 929
RA+R GQKK V+ Y L+ GT +E RQ K+ L+ V R Q H+ +S E+
Sbjct: 1236 FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV---DRQQVHRTISKEEM 1291
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 403 HQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM---E 459
HQ F+W N+ I K G K L GC+++H G GKT I FL + M +
Sbjct: 722 HQVTGIRFMWENIIQSISRVK-SGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRCVD 776
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKH 519
L K +I+ P +L W EF+ W +P +R ++ VS
Sbjct: 777 LGLKT-ALIVTPVNVLHNWRSEFEKW---MPSE-------VKPLRIFMLGDVSRER---- 821
Query: 520 VLISYCRMAKLYYWRSEKSILGISYNLFEQFT----KKDSDERK----FLLEVPGLVVLD 571
R L WR + + + Y F + KD + + L + P ++V D
Sbjct: 822 ------RFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCD 875
Query: 572 EGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGE 631
E H +N+K+ +++ +++ +RI L+G+P QNN E Y + R F +P +
Sbjct: 876 EAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNR 935
Query: 632 SLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLV 691
G+ ++ S+ V +RS IL E + FV ++++ LP V
Sbjct: 936 FQNPIENGQ--HMNSTAEDVKIMNQRSHILYE---QLKGFVQRMDMNVVKKDLPPKTVFV 990
Query: 692 VTLNPTILQKNVFE 705
+++ + LQ+ +++
Sbjct: 991 ISVKLSPLQRILYQ 1004
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 759 KTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHL-------FCWKEGTDVLQLHG 811
K LL+++ + +K LVFSQ I L L+ L + WK+G D ++ G
Sbjct: 1095 KMILLLDILSMSADVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDG 1154
Query: 812 KVDAKLRQTSIKAFNDPDSN-VKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAI 870
K ++ RQ + FN+PD+ VK L STRA GI+L A+RV+++D WNP+ + QAI
Sbjct: 1155 KTESSERQKLVDRFNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAI 1214
Query: 871 SRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAEL 929
RA+R GQKK V+ Y L+ GT +E RQ K+ L+ V R Q H+ +S E+
Sbjct: 1215 FRAWRYGQKKPVFAYRLMARGTIEEKIYKRQVTKEGLAARVV---DRQQVHRTISKEEM 1270
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 137/310 (44%), Gaps = 55/310 (17%)
Query: 403 HQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYM---E 459
HQ F+W N+ I K G K L GC+++H G GKT I FL + M +
Sbjct: 722 HQVTGIRFMWENIIQSISRVK-SGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRCVD 776
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKH 519
L K +I+ P +L W EF+ W +P V+ + ++ +VS++
Sbjct: 777 LGLKT-ALIVTPVNVLHNWRSEFEKW---MP----------SEVKPLRIFMLG--DVSRY 820
Query: 520 VLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERK----FLLEVPGLVVLDEGHT 575
K +Y E++ G+ KD + + L + P ++V DE H
Sbjct: 821 ---------KFFY---ERNFWGV----------KDLNAARGICNALRDGPDILVCDEAHI 858
Query: 576 PRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGESLRN 635
+N+K+ +++ +++ +RI L+G+P QNN E Y + R F +P +
Sbjct: 859 IKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEFRNRFQNP 918
Query: 636 ESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLN 695
G+ ++ S+ V +RS IL E + FV ++++ LP V+++
Sbjct: 919 IENGQ--HMNSTAEDVKIMNQRSHILYE---QLKGFVQRMDMNVVKKDLPPKTVFVISVK 973
Query: 696 PTILQKNVFE 705
+ LQ+ +++
Sbjct: 974 LSPLQRILYQ 983
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 126/540 (23%), Positives = 220/540 (40%), Gaps = 77/540 (14%)
Query: 400 MYPHQCEAFEFL---WTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQS 456
++ HQ EA +L W I+ +++ G GKT FL S
Sbjct: 689 LFAHQLEALNWLRRCWHKSKNVILADEM------------------GLGKTVSASAFLSS 730
Query: 457 YMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRN 515
+ RP +++ P + W EF W P N+ S R + R+
Sbjct: 731 LYFEFGVARPCLVLVPLSTMPNWLSEFSLW---APLLNVVEYHGSAKGRAII------RD 781
Query: 516 VSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGHT 575
H S K ++ + +E S R EV +V+DEGH
Sbjct: 782 YEWHAKNSTGTTKKPTSYK-----FNVLLTTYEMVLADSSHLRGVPWEV---LVVDEGHR 833
Query: 576 PRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGESLRN 635
+NS+S ++ ++ R++L+GTP QNN E+YN L + +
Sbjct: 834 LKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQ---------PSSFPSLS 884
Query: 636 ESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQESLPGLRKLVVTLN 695
+ R+ LTS+ + ++E++ ++ P + +++P + +V +
Sbjct: 885 SFEERFHDLTSA-----------EKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVE 933
Query: 696 PTILQKNVFEDIERK-----RSSHLAQGNSNVLKLEYEETLTAIHPALYGLSERMN---- 746
T +Q + + K R+ ++L + + HP L +E +
Sbjct: 934 LTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPESGSLE 993
Query: 747 -LPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTD 805
L R+ + K L ++++ +VL+FSQ L +L L F K
Sbjct: 994 FLHDMRI--KASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKT--- 1048
Query: 806 VLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSV 865
++ G V RQ +I FN D N V L STRAC GI+L A V++ D +NP
Sbjct: 1049 FERVDGSVAVADRQAAIARFNQ-DKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHA 1107
Query: 866 ERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLSKMVFFN-SGRDQHHQNV 924
+ QA++RA+R+GQ K + Y L+ + E++ + A+K + +F N SG + +++
Sbjct: 1108 DIQAMNRAHRIGQSKRLLVYRLVVRASV-EERILQLAKKKLMLDQLFVNKSGSQKEFEDI 1166
>AT3G32330.1 | Symbols: | DNA repair protein-related |
chr3:13276082-13277155 FORWARD LENGTH=327
Length = 327
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 152/368 (41%), Gaps = 89/368 (24%)
Query: 394 PGVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMF 453
P K M PH E FL+ NL ++ N + GC+I+ P + KT L I F
Sbjct: 17 PFHKMIMKPHHFEILNFLYKNL---VVEN----------SNGCIIAQTPLSEKTFLMISF 63
Query: 454 LQSYMELYPKCRPIIIAPKGILG--TWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLV 511
+ Y+E +P + + + PK +L + KTW + S SDN
Sbjct: 64 IYGYLEKHPNSKSLFVLPKWVLNLEVLKRWIKTWSIIFLGAKQFSNIVSDN--------- 114
Query: 512 SGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLD 571
SG S R LL + +VV D
Sbjct: 115 SGAEASDSC-------------------------------------RDILLNILSVVVFD 137
Query: 572 EGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGE 631
G PRN K VS I+T +++L+G+ +QNN E++N L +A P+F K N+ G+
Sbjct: 138 RGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPEFLKH--NQIGK 195
Query: 632 SLRN----ESKGRWAYLT---------SSLAKVTDNGRRSKILQEIRNMICPFVHVHHGT 678
+ R E+ G L + L++ +D+G + L E++ + ++ H G
Sbjct: 196 NFRKLLNVEADGPSTNLKMPLFDKLEEALLSQDSDHGDKICYLTELKMLTNKVIYNHKGE 255
Query: 679 ILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTAI--HP 736
L E +PGL V L PT QK+ +E +ERK SN + TL+ I HP
Sbjct: 256 CLLE-VPGLMDFTVVLKPTSSQKSAWE-VERK---------SNGKGFKKYSTLSGIMLHP 304
Query: 737 ALYGLSER 744
L S+R
Sbjct: 305 LLCAFSDR 312
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 144/547 (26%), Positives = 218/547 (39%), Gaps = 106/547 (19%)
Query: 395 GVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFL 454
GV + PHQ E +L I L G L G GKT I FL
Sbjct: 46 GVTATLKPHQVEGVSWL--------IQKYLLG------VNVVLELDQMGLGKTLQAISFL 91
Query: 455 QSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGR 514
Y K R +G+ G PF + +D +
Sbjct: 92 S-----YLKFR------QGLPG-------------PFLVLCPLSVTDGWVSEINRFTPNL 127
Query: 515 NVSKHVLISYCR--MAKLYYWRSEK---SILGISYNLFEQFTKKDSDERKFLLEVP-GLV 568
V ++V YCR M K Y +L +Y++ D D FL ++P
Sbjct: 128 EVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDI----ALVDQD---FLSQIPWQYA 180
Query: 569 VLDEGHTPRNSKSLIWKSVSE-IRTTKRIILSGTPFQNNFDELYNTLCLARP-------Q 620
++DE +N S+++ + E +R++++GTP QNN EL+ + P Q
Sbjct: 181 IIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQ 240
Query: 621 FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSK-ILQEIRNMICPFVHVHHGTI 679
F E G+ L + S + Y + RR+K +L E N++
Sbjct: 241 FLSAF-KETGDGL-DVSNDKETYKSLKFILGAFMLRRTKSLLIESGNLV----------- 287
Query: 680 LQESLPGLRKLVVTLNPTILQKNVFEDIERKRSS---HLAQGNSNVLKLE---YEETLTA 733
LP L +L V + LQK ++ I RK L+ G SN L+ +
Sbjct: 288 ----LPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKAC 343
Query: 734 IHPALYGLSERMNLPRFRLNP-EEGV-------KTKFLLELIRLCEIRNEKVLVFSQYID 785
HP L+ P P EEG K L +L++ +VL+FSQ
Sbjct: 344 SHPYLF--------PGIEPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTS 395
Query: 786 PLKLLASQLE-HLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYE 844
L +L +E + ++ +L G V A+ R +IK F+ SN V + STRA
Sbjct: 396 TLDILQDFMELRRYSYE------RLDGSVRAEERFAAIKNFSVDGSNAFVFMISTRAGGV 449
Query: 845 GISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEK 904
G++LV A V+ + WNP V++QA+ RA+R+GQ V + +L+T + +E R K
Sbjct: 450 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 509
Query: 905 DHLSKMV 911
LS V
Sbjct: 510 LQLSHNV 516
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 138/559 (24%), Positives = 218/559 (38%), Gaps = 111/559 (19%)
Query: 395 GVKENMYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFL 454
GV + PHQ E +L G+ L G GKT I FL
Sbjct: 46 GVTATLKPHQVEGVSWLIQKYLLGV--------------NVVLELDQMGLGKTLQAISFL 91
Query: 455 QSYMELYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGR 514
Y K R +G+ G PF + +D +
Sbjct: 92 S-----YLKFR------QGLPG-------------PFLVLCPLSVTDGWVSEINRFTPNL 127
Query: 515 NVSKHVLISYCR--MAKLYYWRSEKSILG--ISYNLFEQFTKKDSDERKFLLEVP-GLVV 569
V ++V YCR M K Y +KS G + +++ ++ FL ++P +
Sbjct: 128 EVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQDFLSQIPWQYAI 187
Query: 570 LDEGHTPRNSKSLIWKSVSE-IRTTKRIILSGTPFQNNFDELYNTLCLARP-------QF 621
+DE +N S+++ + E +R++++GTP QNN EL+ + P QF
Sbjct: 188 IDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCMPLVFGTLDQF 247
Query: 622 TKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVHVHHGTILQ 681
E G+ L D + + ++ ++ F+ ++L
Sbjct: 248 LSAF-KETGDGLSG----------------LDVSNDKETYKSLKFILGAFMLRRTKSLLI 290
Query: 682 ES----LPGLRKLVVTLNPTILQKNVFEDIERKRSS---HLAQGNSNVLKLE---YEETL 731
ES LP L +L V + LQK ++ I RK L+ G SN L+ +
Sbjct: 291 ESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRK 350
Query: 732 TAIHPALYGLSERMNLPRFRLNP-EEGV-------KTKFLLELIRLCEIRNEKVLVFSQY 783
HP L+ P P EEG K L +L++ +VL+FSQ
Sbjct: 351 ACSHPYLF--------PGIEPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQM 402
Query: 784 IDPLKLLASQLE-HLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPD----------SNV 832
L +L +E + ++ +L G V A+ R +IK F+ SN
Sbjct: 403 TSTLDILQDFMELRRYSYE------RLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNA 456
Query: 833 KVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGT 892
V + STRA G++LV A V+ + WNP V++QA+ RA+R+GQ V + +L+T +
Sbjct: 457 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHS 516
Query: 893 RDEDKCCRQAEKDHLSKMV 911
+E R K LS V
Sbjct: 517 VEEVILRRAERKLQLSHNV 535
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 773 RNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNV 832
+ +K+L+FS + L +L F ++G +L G LRQ+ + FN S
Sbjct: 543 KGDKILLFSYSVRMLDILEK-----FLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSK- 596
Query: 833 KVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGT 892
+V L ST+A G++LV A+RVV+ D WNPS + QA R++R GQK+ V + L++AG+
Sbjct: 597 QVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGS 656
Query: 893 RDEDKCCRQAEKDHLSKMV 911
+E RQ K LS +
Sbjct: 657 LEELVYTRQVYKQQLSNIA 675
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 188/479 (39%), Gaps = 81/479 (16%)
Query: 443 GTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSD 501
G GKT I + ME P +++ P +L W+ E W I
Sbjct: 782 GLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSI------------ 829
Query: 502 NVRDHVMNLVSGRNVSKHVLISYCRMA----KLYYWRSEKSILGISYNLFEQFTKKDSDE 557
H ++ YC KL+ + + +E K +
Sbjct: 830 -----------------HKIV-YCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKH--D 869
Query: 558 RKFLLEVP-GLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCL 616
R L ++ +++DEGH +N+ + + ++ R++L+GTP QNN +EL+ L
Sbjct: 870 RPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNF 929
Query: 617 ARPQFTKCNPNEKGESLRN---ESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
P N +E N +S G + + L++ + I+ + ++ PFV
Sbjct: 930 LLPNI--FNSSEDFSQWFNKPFQSNGESSAEEALLSEEEN----LLIINRLHQVLRPFVL 983
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTA 733
++ LP + ++ + QK + + +E S GN+ A
Sbjct: 984 RRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI---GNAKS---------RA 1031
Query: 734 IHPALYGLSERMNLPRF-RLNPEEG---VKTKFLLELIRLC-------------EIRNEK 776
+H ++ L N P +L+ EE + FL ++RLC + + +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHR 1091
Query: 777 VLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVML 836
VL FS + L +E K G L+L G+ R I FN S + L
Sbjct: 1092 VLFFST----MTRLLDVMEDYLTLK-GYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFL 1146
Query: 837 ASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
S RA G++L A V+L D WNP V+ QA +RA+R+GQKK V T + +E
Sbjct: 1147 LSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEE 1205
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 188/479 (39%), Gaps = 81/479 (16%)
Query: 443 GTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSD 501
G GKT I + ME P +++ P +L W+ E W I
Sbjct: 782 GLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSI------------ 829
Query: 502 NVRDHVMNLVSGRNVSKHVLISYCRMA----KLYYWRSEKSILGISYNLFEQFTKKDSDE 557
H ++ YC KL+ + + +E K +
Sbjct: 830 -----------------HKIV-YCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKH--D 869
Query: 558 RKFLLEVP-GLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCL 616
R L ++ +++DEGH +N+ + + ++ R++L+GTP QNN +EL+ L
Sbjct: 870 RPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNF 929
Query: 617 ARPQFTKCNPNEKGESLRN---ESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
P N +E N +S G + + L++ + I+ + ++ PFV
Sbjct: 930 LLPNI--FNSSEDFSQWFNKPFQSNGESSAEEALLSEEEN----LLIINRLHQVLRPFVL 983
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTA 733
++ LP + ++ + QK + + +E S GN+ A
Sbjct: 984 RRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI---GNAKS---------RA 1031
Query: 734 IHPALYGLSERMNLPRF-RLNPEEG---VKTKFLLELIRLC-------------EIRNEK 776
+H ++ L N P +L+ EE + FL ++RLC + + +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHR 1091
Query: 777 VLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVML 836
VL FS + L +E K G L+L G+ R I FN S + L
Sbjct: 1092 VLFFST----MTRLLDVMEDYLTLK-GYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFL 1146
Query: 837 ASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
S RA G++L A V+L D WNP V+ QA +RA+R+GQKK V T + +E
Sbjct: 1147 LSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEE 1205
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 188/479 (39%), Gaps = 81/479 (16%)
Query: 443 GTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSD 501
G GKT I + ME P +++ P +L W+ E W I
Sbjct: 782 GLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSI------------ 829
Query: 502 NVRDHVMNLVSGRNVSKHVLISYCRMA----KLYYWRSEKSILGISYNLFEQFTKKDSDE 557
H ++ YC KL+ + + +E K +
Sbjct: 830 -----------------HKIV-YCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKH--D 869
Query: 558 RKFLLEVP-GLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCL 616
R L ++ +++DEGH +N+ + + ++ R++L+GTP QNN +EL+ L
Sbjct: 870 RPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNF 929
Query: 617 ARPQFTKCNPNEKGESLRN---ESKGRWAYLTSSLAKVTDNGRRSKILQEIRNMICPFVH 673
P N +E N +S G + + L++ + I+ + ++ PFV
Sbjct: 930 LLPNI--FNSSEDFSQWFNKPFQSNGESSAEEALLSEEEN----LLIINRLHQVLRPFVL 983
Query: 674 VHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQGNSNVLKLEYEETLTA 733
++ LP + ++ + QK + + +E S GN+ A
Sbjct: 984 RRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSI---GNAKS---------RA 1031
Query: 734 IHPALYGLSERMNLPRF-RLNPEEG---VKTKFLLELIRLC-------------EIRNEK 776
+H ++ L N P +L+ EE + FL ++RLC + + +
Sbjct: 1032 VHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHR 1091
Query: 777 VLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVML 836
VL FS + L +E K G L+L G+ R I FN S + L
Sbjct: 1092 VLFFST----MTRLLDVMEDYLTLK-GYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFL 1146
Query: 837 ASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
S RA G++L A V+L D WNP V+ QA +RA+R+GQKK V T + +E
Sbjct: 1147 LSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEE 1205
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 774 NEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPD-SNV 832
N K +VFSQ+ L LL + L+ G +L+L G + K R I F +P+ +
Sbjct: 706 NTKSVVFSQFRKMLLLLETPLK-----AAGFTILRLDGAMTVKKRTQVIGEFGNPELTGP 760
Query: 833 KVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGT 892
V+LAS +A GI+L ASRV L D WNP+VE QA+ R +R+GQK+ V +I +
Sbjct: 761 VVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNS 820
Query: 893 RDEDKCCRQAEKDHLSKMVF-FNSGRDQHHQNV 924
+E Q +K +L+ F +D+ NV
Sbjct: 821 IEERVLELQQKKKNLANEAFKRRQKKDEREVNV 853
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 12/186 (6%)
Query: 731 LTAIHPALYGLSERMNLPRFRLNPEEGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLL 790
L+ I PA+ + ++ P RL + K + L L+R + + L+F+Q L +L
Sbjct: 1050 LSPIRPAI--VRRQVYFPDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVL 1107
Query: 791 ASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVML--ASTRACYEGISL 848
+ F G ++L G + RQT ++ FN +N K+ L STR+ GI+L
Sbjct: 1108 EA-----FINLYGYTYMRLDGSTPPEERQTLMQRFN---TNPKIFLFILSTRSGGVGINL 1159
Query: 849 VGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHLS 908
VGA V+ D WNP++++QA R +R+GQ + V+ Y LI+ T +E+ + +K L
Sbjct: 1160 VGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLD 1219
Query: 909 KMVFFN 914
+V N
Sbjct: 1220 NLVIQN 1225
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 52/278 (18%)
Query: 437 LISHAPGTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTW----KVDIPF 491
+++ G GKT +TI L P +I+ P ++ WE EF W K+ F
Sbjct: 558 ILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYF 617
Query: 492 HNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKSILGISYNLFEQFT 551
+ R M L S HV I+ +Y L Q
Sbjct: 618 GSAKERKLK---RQGWMKLNSF-----HVCIT-------------------TYRLVIQ-- 648
Query: 552 KKDSDERKFLLEVPGLVVLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELY 611
D + F + ++LDE H +N KS W+++ + +RI+L+GTP QN+ EL+
Sbjct: 649 ----DSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELW 704
Query: 612 NTLCLARPQFTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRR--SKILQEIRNMIC 669
+ + P + + K + + +A + + + +++ + N++
Sbjct: 705 SLMHFLMPHVFQSHQEFKD------------WFCNPIAGMVEGQEKINKEVIDRLHNVLR 752
Query: 670 PFVHVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDI 707
PF+ +++ LP + V+ + Q+N++ED
Sbjct: 753 PFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDF 790
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 757 GVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAK 816
K + L EL+ + +VL+FSQ+ L +L L+ + G +L G
Sbjct: 587 SAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVI-----GVTYRRLDGSTQVT 641
Query: 817 LRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRL 876
RQT + FN+ D ++ L STRA +G++L GA V++ D+ +NP ++RQA R +R+
Sbjct: 642 DRQTIVDTFNN-DKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRI 700
Query: 877 GQKKFVYTYHLITAGTRDED 896
GQ K V + L+T T DE+
Sbjct: 701 GQTKPVTIFRLVTKSTVDEN 720
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 121/300 (40%), Gaps = 68/300 (22%)
Query: 435 GCLISHAPGTGKTRLTIMFLQSYMELYPKCRP-IIIAPKGILGTWEEEFKTWKVDIPFHN 493
G +++ G GKT I +L L P +++ P +L WE E + W
Sbjct: 234 GAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPASVLENWERELRKW-------- 285
Query: 494 MNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCRMAKLYYWRSEKS-----------ILGI 542
++ Y A+ Y R S +L +
Sbjct: 286 ----------------------CPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 543 SYNLFEQFTKKDSDERKFLLEVP-GLVVLDEGHTPRNSKSLIWKSVSEI--RTTKRIILS 599
Y+LFE+ +++ D+RK L V++DE H ++ S WK++ + +R++L+
Sbjct: 324 CYSLFERHSEQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLT 383
Query: 600 GTPFQNNFDELYNTLCLARPQ-FTKCNPNEKGESLRNESKGRWAYLTSSLAKVTDNGRRS 658
GTP QN+ EL++ L P FT N + L K+ N +
Sbjct: 384 GTPLQNDLHELWSLLEFMLPDIFTTENVD--------------------LKKLL-NAEDT 422
Query: 659 KILQEIRNMICPFV-HVHHGTILQESLPGLRKLVVTLNPTILQKNVFEDIERKRSSHLAQ 717
+++ +++++ PF+ ++Q+ +P ++++ L + E IE R++ A+
Sbjct: 423 ELITRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAIEEYRAASQAR 482
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 775 EKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKV 834
EK +VFSQ+ L LL L + G + L+ GK+ K R+ +K FN+ +
Sbjct: 1128 EKSIVFSQWTSFLDLLEIPLR-----RRGFEFLRFDGKLAQKGREKVLKEFNETKQKT-I 1181
Query: 835 MLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRD 894
+L S +A G++L AS V L+D WNP+VE QAI R +R+GQK+ V+ I T +
Sbjct: 1182 LLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVE 1241
Query: 895 EDKCCRQAEKDHL 907
E QA K +
Sbjct: 1242 ERMQQVQARKQRM 1254
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 772 IRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND-PDS 830
+ EK +VF+Q+ L LL + L+ G + GK+ R +++ FN PD
Sbjct: 1112 VAGEKAIVFTQWTKMLDLLEAGLK-----SSGIQYRRFDGKMTVPARDAAVQDFNTLPD- 1165
Query: 831 NVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITA 890
V VM+ S +A G+++V A V++LD+ WNP+ E QAI RA+R+GQ + V
Sbjct: 1166 -VSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVK 1224
Query: 891 GTRDEDKCCRQAEKDHLSKMVFF---NSGRDQH 920
T ++ Q +K + F N R+ H
Sbjct: 1225 DTVEDRILALQQKKRKMVASAFGEHENGSRESH 1257
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 772 IRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND-PDS 830
+ EK +VF+Q+ L LL + L+ G + GK+ R +++ FN PD
Sbjct: 1069 VAGEKAIVFTQWTKMLDLLEAGLK-----SSGIQYRRFDGKMTVPARDAAVQDFNTLPD- 1122
Query: 831 NVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITA 890
V VM+ S +A G+++V A V++LD+ WNP+ E QAI RA+R+GQ + V
Sbjct: 1123 -VSVMIMSLKAASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVK 1181
Query: 891 GTRDEDKCCRQAEKDHLSKMVFF---NSGRDQH 920
T ++ Q +K + F N R+ H
Sbjct: 1182 DTVEDRILALQQKKRKMVASAFGEHENGSRESH 1214
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAF-NDPDSNVKV 834
K ++FSQ+ L L+ L + + +L G + R ++K F NDPD VKV
Sbjct: 828 KTIIFSQWTGMLDLV-----ELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPD--VKV 880
Query: 835 MLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRD 894
M+ S +A G++++ A V+LLD+ WNP+ E QAI RA+R+GQ + V + T +
Sbjct: 881 MIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVE 940
Query: 895 EDKCCRQAEKDHLSKMVFFNSGRDQ 919
+ Q EK KMV G D
Sbjct: 941 DRILALQEEK---RKMVASAFGEDH 962
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 749 RFRLNPE----EGVKTKFLLELIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGT 804
RF+++ E E K LLE + K ++FSQ+ L LL L +
Sbjct: 850 RFQVDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLS-----RNNF 904
Query: 805 DVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPS 864
++L G + + R+ +K F++ D ++ V+L S +A GI+L AS ++D WNP+
Sbjct: 905 SFVRLDGTLSQQQREKVLKEFSE-DGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPA 963
Query: 865 VERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHL 907
VE QA+ R +R+GQ K V I GT +E QA K +
Sbjct: 964 VEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRM 1006
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 46/202 (22%)
Query: 467 IIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKHVLISYCR 526
+I+ P +LG W+ E + M++ S +V H G++ K
Sbjct: 493 LIVCPMTLLGQWKTEIE----------MHAKPGSLSVYVHY-----GQSRPKD------- 530
Query: 527 MAKLYYWRSEKSILGISYN-LFEQFTKKDSDERKFLLEVPGL-VVLDEGHTPRNSKSLIW 584
AKL S+ ++ +Y L +F++++S + + + V +VLDE HT +NSKS I
Sbjct: 531 -AKLL---SQSDVVITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQIS 586
Query: 585 KSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGESLRNESKGRWAYL 644
+ + + +R L+GTP QNN ++LY+ L LR E G WA+
Sbjct: 587 LAAAALVADRRWCLTGTPIQNNLEDLYSLLRF----------------LRIEPWGTWAWW 630
Query: 645 TSSLAKVTDNG--RRSKILQEI 664
+ K + G R K++Q I
Sbjct: 631 NKLVQKPFEEGDERGLKLVQSI 652
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 744 RMNLPRFRLNPEEGVKTKFLLELIRLCEIRN--EKVLVFSQYIDPLKLLASQLEHLFCWK 801
R+NL F+ + K + L E IR R+ K +VFSQ+ L L++ L K
Sbjct: 497 RINLDDFKTS----TKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALG-----K 547
Query: 802 EGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVW 861
G +QL G + + ++K F + + + +V+L S +A ++L AS V ++D W
Sbjct: 548 SGVSCVQLVGSMSKAAKDAALKNFKE-EPDCRVLLMSLQAGGVALNLTAASHVFMMDPWW 606
Query: 862 NPSVERQAISRAYRLGQKKFVYTYHLITAGTRDEDKCCRQAEKDHL 907
NP+VERQA R +R+GQ K V I T +E Q +K+ L
Sbjct: 607 NPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDL 652
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND-PDSNVKV 834
K ++FSQ+ L L+ L + G + +L G + R ++K F+ PD VKV
Sbjct: 894 KTIIFSQWTGMLDLV-----ELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPD--VKV 946
Query: 835 MLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRD 894
ML S +A G+++V A V+LLD+ WNP+ E QAI RA+R+GQ + V T IT
Sbjct: 947 MLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPV-TVTRITIKDTV 1005
Query: 895 EDKCCR-QAEKDHLSKMVF 912
ED+ + Q EK + F
Sbjct: 1006 EDRILKLQEEKRTMVASAF 1024
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 766 LIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAF 825
L++ N +VL+F+Q L +L + + L+L G R+ ++ F
Sbjct: 1214 LLKRLRAGNHRVLLFAQMTKMLNILEDYMNY-----RKYKYLRLDGSSTIMDRRDMVRDF 1268
Query: 826 NDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTY 885
S++ V L STRA GI+L A V+ + WNP+++ QA+ RA+RLGQ K V Y
Sbjct: 1269 QH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1327
Query: 886 HLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILED 936
LI T +E R ++K+ + ++V G Q + +A++ +++D
Sbjct: 1328 RLICKETVEEKILHRASQKNTVQQLV-MTGGHVQGDDFLGAADVVSLLMDD 1377
>AT3G32280.1 | Symbols: | ATP-dependent helicase family protein |
chr3:13233832-13240154 FORWARD LENGTH=474
Length = 474
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 86/222 (38%), Gaps = 59/222 (26%)
Query: 400 MYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYME 459
M PH E FL+ NL ++ N + GC+I+ P + KT L I F+ Y+E
Sbjct: 312 MKPHHFEILNFLYKNL---VVEN----------SNGCIIAQTPLSEKTFLMISFIYGYLE 358
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKVDIPFHNMNSTDCSDNVRDHVMNLVSGRNVSKH 519
+P + + + PK +L + KT + S SDN SG S
Sbjct: 359 KHPNSKSLFVLPKWVLNGLKRWIKTRSIIFLGAKQFSNIVSDN---------SGAEASDS 409
Query: 520 VLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGHTPRNS 579
R LL + +VV D G PRN
Sbjct: 410 C-------------------------------------RDILLNILSVVVFDRGTDPRNE 432
Query: 580 KSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQF 621
K VS I+T +++L+G+ ++NN E++N +A P F
Sbjct: 433 MMCFLKVVSRIKTPHKVLLTGSLYKNNIKEVFNIFDVAFPNF 474
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 766 LIRLCEIRNEKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAF 825
L++ N +VL+F+Q L +L + + L+L G R+ ++ F
Sbjct: 1247 LLKRLRAGNHRVLLFAQMTKMLNILEDYMNY-----RKYKYLRLDGSSTIMDRRDMVRDF 1301
Query: 826 NDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTY 885
S++ V L STRA GI+L A V+ + WNP+++ QA+ RA+RLGQ K V Y
Sbjct: 1302 QH-RSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVY 1360
Query: 886 HLITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILED 936
LI T +E R ++K+ + ++V G Q + +A++ +++D
Sbjct: 1361 RLICKETVEEKILHRASQKNTVQQLV-MTGGHVQGDDFLGAADVVSLLMDD 1410
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 738 LYGLSERMNLPRFRLNP-EEGVKTKFLLELIRLCEIRN--EKVLVFSQYIDPLKLLASQL 794
L G L R +L+ + K + L E IR R+ K +VFSQ+ L L+ L
Sbjct: 641 LKGFRASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYTL 700
Query: 795 EHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVMLASTRACYEGISLVGASRV 854
K G +QL G + R T+I F + D + +V L S +A ++L AS V
Sbjct: 701 G-----KCGVSCVQLVGSMTMAARDTAINKFKE-DPDCRVFLMSLKAGGVALNLTVASHV 754
Query: 855 VLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
++D WNP+VERQA R +R+GQ K + I T +E
Sbjct: 755 FMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEE 795
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 771 EIRNEKVLVFSQYIDPLKLLASQL--EHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND- 827
++ EK +VFSQ+ L LL + L H+ +L G + R +++ FN
Sbjct: 962 KVAGEKAIVFSQWTKMLNLLEASLVSSHI-------QYRRLDGTMSVAARDKAVQDFNTL 1014
Query: 828 PDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHL 887
P+ V VM+ S +A G+++V A V++LD+ WNP+ E QAI RA+R+GQ + V
Sbjct: 1015 PE--VTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRF 1072
Query: 888 ITAGTRDEDKCCRQAEKDHLSKMVFFNSGRDQHHQNVSSAELGDQILED 936
T ++ Q +K + F + +++ +L + D
Sbjct: 1073 TVKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTVEDLSYLFMAD 1121
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 771 EIRNEKVLVFSQYIDPLKLLASQL--EHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFND- 827
++ EK +VFSQ+ L LL + L H+ +L G + R +++ FN
Sbjct: 1120 KVAGEKAIVFSQWTKMLNLLEASLVSSHI-------QYRRLDGTMSVAARDKAVQDFNTL 1172
Query: 828 PDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHL 887
P+ V VM+ S +A G+++V A V++LD+ WNP+ E QAI RA+R+GQ + V
Sbjct: 1173 PE--VTVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRF 1230
Query: 888 ITAGTRDEDKCCRQAEKDHLSKMVFFNS--GRDQHHQNV 924
T ++ Q +K + F G Q H V
Sbjct: 1231 TVKDTVEDRILALQQKKRMMVASAFGEDEKGSRQSHLTV 1269
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVM 835
+VL+F+Q+ L ++ L + ++L G V + R +KAFN D + V+
Sbjct: 1863 RVLIFAQHKALLDIIEKDLFQ--AHMKSVTYMRLDGSVVPEKRFEIVKAFNS-DPTIDVL 1919
Query: 836 LASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
L +T G++L A +V ++ WNP + QA+ RA+RLGQK+ V + LI GT +E
Sbjct: 1920 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1979
Query: 896 DKCCRQAEKDHLSKMVF 912
Q K ++ V
Sbjct: 1980 KVMSLQKFKVSVANTVI 1996
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 569 VLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQF 621
+LDEGH +N+KS I +V +++ R+ILSGTP QNN EL++ P F
Sbjct: 1613 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGF 1665
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 776 KVLVFSQYIDPLKLLASQL--EHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVK 833
+VL+F+Q+ L ++ L H+ + ++L G V + R +KAFN D +
Sbjct: 1832 RVLIFAQHKALLDIIEKDLFQAHM----KSVTYMRLDGSVVPEKRFEIVKAFNS-DPTID 1886
Query: 834 VMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTR 893
V+L +T G++L A +V ++ WNP + QA+ RA+RLGQK+ V + LI GT
Sbjct: 1887 VLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTL 1946
Query: 894 DE 895
+E
Sbjct: 1947 EE 1948
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 569 VLDEGHTPRNSKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQF 621
+LDEGH +N+KS I +V +++ R+ILSGTP QNN EL++ P F
Sbjct: 1582 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGF 1634
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVM 835
+VL+FS L +L E W+ ++ G + R+++I FNDPD++ +
Sbjct: 1325 RVLLFSTMTKLLDIL----EEYLQWRRLV-YRRIDGTTSLEDRESAIVDFNDPDTDCFIF 1379
Query: 836 LASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHL 887
L S RA G++L A VV+ D NP E QA++RA+R+GQ + V ++
Sbjct: 1380 LLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM 1431
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVM 835
+VL+FS L +L E W+ ++ G + R+++I FNDPD++ +
Sbjct: 1326 RVLLFSTMTKLLDIL----EEYLQWRRLV-YRRIDGTTSLEDRESAIVDFNDPDTDCFIF 1380
Query: 836 LASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHL 887
L S RA G++L A VV+ D NP E QA++RA+R+GQ + V ++
Sbjct: 1381 LLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYM 1432
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAFNDPDSNVKVM 835
K LVF+ + L+ L H F K+ +++ G A RQ + F D D +K
Sbjct: 486 KFLVFAHHQSMLEEL-----HQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKD-EIKAA 539
Query: 836 LASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTRDE 895
+ S RA GI+L AS V+ ++ W P QA RA+R+GQ V ++L+ T D+
Sbjct: 540 VLSIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDD 599
Query: 896 DKC-CRQAEKDHLSKMV 911
Q++ D+L +M+
Sbjct: 600 IIWDVVQSKLDNLGQML 616
>AT3G31900.1 | Symbols: | ATP-dependent helicase family protein |
chr3:12875071-12877422 FORWARD LENGTH=393
Length = 393
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 90/236 (38%), Gaps = 70/236 (29%)
Query: 400 MYPHQCEAFEFLWTNLAGGIIHNKLKGKKELPVAGGCLISHAPGTGKTRLTIMFLQSYME 459
M PH E FL NL ++ N + GC+I P + KT L I F+ +E
Sbjct: 213 MKPHHFEILNFLCKNL---VVEN----------SNGCIIDQTPLSEKTFLMISFIYVGVE 259
Query: 460 LYPKCRPIIIAPKGILGTWEEEFKTWKV-DIPFHNMNSTDCSDNVRDHVMNLVSGRNVSK 518
E++F KV D+ + ST S ++++ SG S
Sbjct: 260 -----------------RLEKKFGELKVNDLVLLDFYSTKASAKQFSNIVSDNSGAEASD 302
Query: 519 HVLISYCRMAKLYYWRSEKSILGISYNLFEQFTKKDSDERKFLLEVPGLVVLDEGHTPRN 578
R LL + +VV G PRN
Sbjct: 303 SC-------------------------------------RDILLNILSVVVFGRGTDPRN 325
Query: 579 SKSLIWKSVSEIRTTKRIILSGTPFQNNFDELYNTLCLARPQFTKCNPNEKGESLR 634
K VS I+T +++L+G+ +QNN E++N L +A P+F K N+ G++ R
Sbjct: 326 EMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFNILDVAFPEFLK--HNQIGKNFR 379
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 832 VKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAG 891
V ML S +A G+++V AS V+LLD+ WNP+ E QAI RA+R+GQ + V +
Sbjct: 507 VCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKN 566
Query: 892 TRDE 895
T +E
Sbjct: 567 TVEE 570
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 775 EKVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAF-NDPDSNVK 833
+KVL+FSQ+++ + ++ QL G +++ + + + ++ F ND D
Sbjct: 1194 DKVLIFSQFLEHIHVIEQQLT-----TAGIKFGKMYSPMQSYNKMKALAMFQNDADCMAL 1248
Query: 834 VMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFVYTYHLITAGTR 893
+M S G+ L + V L++ +W+ S+E Q ISRA+R+G K+ ++ L GT
Sbjct: 1249 LMDGSGAL---GLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTI 1305
Query: 894 DE 895
+E
Sbjct: 1306 EE 1307
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 776 KVLVFSQYIDPLKLLASQLEHLFCWKEGTDVLQLHGKVDAKLRQTSIKAF---------- 825
KVLVFS + D L +L EH F T +++ G + QT+I F
Sbjct: 1451 KVLVFSSWNDVLDVL----EHAFAANSIT-CIRMKG---GRKSQTAISKFKGSEKETQKT 1502
Query: 826 ---NDPDSNVKVMLASTRACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKFV 882
+ +++V+L + G++L+ A V+L++ + NP+ E QA+ R +R+GQ+K
Sbjct: 1503 NSHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPT 1562
Query: 883 YTYHLITAGTRDE 895
+ + +GT +E
Sbjct: 1563 LVHRFLVSGTVEE 1575