Miyakogusa Predicted Gene

Lj2g3v1988760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1988760.1 tr|A9SJC1|A9SJC1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165246,25,8e-18,
,CUFF.38273.1
         (357 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32730.1 | Symbols:  | unknown protein; LOCATED IN: chloropla...   271   5e-73

>AT1G32730.1 | Symbols:  | unknown protein; LOCATED IN: chloroplast;
           EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF702 (InterPro:IPR007818); Has 120
           Blast hits to 118 proteins in 39 species: Archae - 0;
           Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33;
           Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
           | chr1:11841077-11842956 FORWARD LENGTH=327
          Length = 327

 Score =  271 bits (693), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 21/279 (7%)

Query: 18  LNPPKSQRGLNKPKCKQCGNVARSRCPYEQCKRCCSRNENPCHIHV-KTNSTLPDKLPSS 76
           + PPK+ RGLNKPKC QCGNVARSRCP++ CK CCSR ENPC IHV K  ST  +K  + 
Sbjct: 17  VTPPKTLRGLNKPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKVASTSGEKTQAP 76

Query: 77  FGAPLDQQSLETSQSATASRVASLRQLSNNFAQFNNLNISLRSKKPLTIKDAATINEWRL 136
                +Q++ E +  +T +RV+S+RQLS+NFAQFNNLN S R +KPLTIKDA  +NEWR 
Sbjct: 77  STPSSEQKATEGTPGST-TRVSSIRQLSSNFAQFNNLNASSRQRKPLTIKDAQALNEWRF 135

Query: 137 SKLKEYKERNIDVENETFDRYMQNVELLEEVLSVKSVENNMTSASESPTTSMENNNEMMT 196
           +KLKEY++RNI+VENE FDRYM NV LLEE  S  SV +  +  + +P    +N  E + 
Sbjct: 136 TKLKEYRDRNIEVENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPE---QNKEENIV 192

Query: 197 TGLKLHLRSNSFRSDSLRMRIQQFVDKGLHRLEKFAVD------DDINKPIDEEPSEVSK 250
           + LKL LRSNS R++S + RI + V  GL +L++  +       DDI + +        K
Sbjct: 193 SELKLRLRSNSARTESFKKRIAETVKAGLVKLKRLDLGSSSDDQDDIKRRV--------K 244

Query: 251 RPKSCSDERLSAISDLIDKINKARSEEDLNSCLEMKSQL 289
           R K   +E+ SA++++IDK+NKAR+EEDL SCLEMKS+L
Sbjct: 245 RKK--WEEKGSALNEIIDKLNKARTEEDLKSCLEMKSKL 281