Miyakogusa Predicted Gene
- Lj2g3v1987530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1987530.1 Non Chatacterized Hit- tr|I1J9N5|I1J9N5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,96.99,0,seg,NULL; no
description,NULL; REGULATOR OF NONSENSE TRANSCRIPTS 1,NULL; DNA2/NAM7
HELICASE FAMILY,N,CUFF.38272.1
(694 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putati... 1218 0.0
AT5G35970.1 | Symbols: | P-loop containing nucleoside triphosph... 108 9e-24
AT2G03270.1 | Symbols: | DNA-binding protein, putative | chr2:9... 102 1e-21
AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside triph... 86 1e-16
AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putat... 75 2e-13
AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putat... 75 2e-13
AT4G15570.1 | Symbols: MAA3 | P-loop containing nucleoside triph... 70 4e-12
AT5G37160.1 | Symbols: | P-loop containing nucleoside triphosph... 51 3e-06
AT5G37150.1 | Symbols: | P-loop containing nucleoside triphosph... 51 3e-06
>AT5G47010.1 | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative
| chr5:19072009-19078856 FORWARD LENGTH=1254
Length = 1254
Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/707 (84%), Positives = 637/707 (90%), Gaps = 18/707 (2%)
Query: 1 MDSQQNNNLFDTASQPDTANDAYTFLEFNTQGE-DFDYPEFRDPIRSPVAWPTPSDSL-- 57
MDSQQ++ LFDTASQPDT D YTFLEFNTQG+ +FDY +F SP AWPTPSDS+
Sbjct: 1 MDSQQSD-LFDTASQPDTVADEYTFLEFNTQGDSEFDYQDFG----SPTAWPTPSDSISI 55
Query: 58 ADPSERG--GAGSDQQSDASPVSV--------APXXXXXXXXXXXXXXXQVVDALAAGMS 107
AD ++RG GA +D S+AS S A VDALAAG+
Sbjct: 56 ADVADRGEGGAAADHHSEASSPSSLSAGAGNGAKVGRGGVGGSGGVSSSSQVDALAAGVG 115
Query: 108 GLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHI 167
LNFE+TGDDD ++YGK DFTEHAC+YCG+SNPACVVRCNV SCRKWFCNSRGNTSGSHI
Sbjct: 116 NLNFEETGDDDGFDYGKNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHI 175
Query: 168 VNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSV 227
VNHLVRAKHKEVCLH+DSPLGETILECYNCGCRNVFLLGFISAKT+SVVVLLCR+PCL+V
Sbjct: 176 VNHLVRAKHKEVCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNV 235
Query: 228 NALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDAS 287
NALKDMNWDLSQWCPLIDDRCFL WLVK+PSEQEQLRARQISAQQINK+EELWKTNPDA+
Sbjct: 236 NALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDAT 295
Query: 288 FDDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIG 347
+DLEKPGVDDEPQ V KYEDAYQYQNVFAPLIKLEADYDKMMKESQSK+N+T+RWDIG
Sbjct: 296 LEDLEKPGVDDEPQPVQPKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIG 355
Query: 348 LNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRA 407
LNKKR+AYFVFPKE+NELRLVPGDELRLRYSGDA HP+WQSVGHVIKLTAQEEVALELRA
Sbjct: 356 LNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSVGHVIKLTAQEEVALELRA 415
Query: 408 SQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQLVRN 467
+QGVP+DVNHGFSVDFVWKSTSFDRMQGAMK FAVDETSVSGYIYH LLGHEVE Q+VRN
Sbjct: 416 NQGVPIDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRN 475
Query: 468 ALPRRFGAPGLPELNASQVYAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQV 527
LPRRFG PGLPELNASQV AVKSVLQ+PISLIQGPPGTGKTVTSAA+VYHMAKQGQGQV
Sbjct: 476 TLPRRFGVPGLPELNASQVNAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQV 535
Query: 528 LVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELH 587
LVCAPSNVAVDQLAEKIS+TGLKVVRLCAKSREAVSSPVE+LTLHYQVRHLDTS+KSELH
Sbjct: 536 LVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELH 595
Query: 588 KLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLI 647
KLQQLKDEQGELSSSDEKKYK LKRATEREI+QSADVICCTCVGA D RL+NFRFRQVLI
Sbjct: 596 KLQQLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLI 655
Query: 648 DESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQ 694
DESTQATEPECLIPLVLG KQVVLVGDHCQLGPVIMCKKAARAGLAQ
Sbjct: 656 DESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQ 702
>AT5G35970.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14119060-14123078
REVERSE LENGTH=961
Length = 961
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 19/215 (8%)
Query: 494 QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 553
+RP+ ++QGPPGTGKT ++ +QG+ +VLV AP+N AVD + EK+ GL +VR
Sbjct: 502 KRPVMIVQGPPGTGKTGMLKEVITLAVQQGE-RVLVTAPTNAAVDNMVEKLLHLGLNIVR 560
Query: 554 LCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHK--------LQQ-LKDEQ-----GEL 599
+ +R +SS V +L V S ++EL + L+Q L+D+ +L
Sbjct: 561 VGNPAR--ISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVLAAGIRQL 618
Query: 600 SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFR-FRQVLIDESTQATEPEC 658
K K ++ T +EI +A V+ T +GA DP + F V+IDE+ Q+ EP C
Sbjct: 619 LKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLVVIDEAGQSIEPSC 678
Query: 659 LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 693
IP++ G K+ +L GD CQL PV++ +KA GL
Sbjct: 679 WIPILQG-KRCILSGDPCQLAPVVLSRKALEGGLG 712
>AT2G03270.1 | Symbols: | DNA-binding protein, putative |
chr2:994071-995990 FORWARD LENGTH=639
Length = 639
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 17/228 (7%)
Query: 481 LNASQVYAV-KSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQ 539
L+ SQ A+ K++ + + L+ GPPGTGKT T +V K+G ++L CA SN+AVD
Sbjct: 190 LDQSQKDAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRG-SKILACAASNIAVDN 248
Query: 540 LAEKISSTGLKVVRLCAKSR---EAVSSPVEHLTLHYQVRHLDTSDKSELH----KLQQL 592
+ E++ +K+VR+ +R + + S ++ L L + E+ KL +
Sbjct: 249 IVERLVPHKVKLVRVGHPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKA 308
Query: 593 KDE------QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVL 646
KD+ Q EL + +++ K + A ++ ++ADVI T GA +L N F V+
Sbjct: 309 KDKNTRRLIQKELRTLGKEERKRQQLAVS-DVIKNADVILTTLTGALTRKLDNRTFDLVI 367
Query: 647 IDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQ 694
IDE QA E C I L+ G++ +L GDH QL P I +A R GL +
Sbjct: 368 IDEGAQALEVACWIALLKGSR-CILAGDHLQLPPTIQSAEAERKGLGR 414
>AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:1601357-1604658 REVERSE LENGTH=1002
Length = 1002
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 108/233 (46%), Gaps = 42/233 (18%)
Query: 475 APGLPELNASQVYAVKSVLQ---RPISLIQGPPGTGKTVTSA-ALVYHMAKQGQGQVLVC 530
P P LNA Q+ +++ VL P +I GPPGTGKT+T A+V Q +VLVC
Sbjct: 391 VPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVC 450
Query: 531 APSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQ 590
APSN A D + EK+ LC + + ++ L+ + +S +
Sbjct: 451 APSNSAADHILEKL---------LCLEGVRIKDN---------EIFRLNAATRS----YE 488
Query: 591 QLKDEQGELSSSDEKKYKA--LKRATEREI----SQSADVICCTCVGAGDPRLANFRFRQ 644
++K E DE +K LK T ++ SA ++ V G F
Sbjct: 489 EIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRG-------HFTH 541
Query: 645 VLIDESTQATEPECLIP---LVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQ 694
+L+DE+ QA+EPE +I L L VVL GD QLGPVI + A GL +
Sbjct: 542 ILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGK 594
>AT1G08840.2 | Symbols: emb2411 | DNA replication helicase, putative |
chr1:2829579-2838369 REVERSE LENGTH=1315
Length = 1315
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 44/217 (20%)
Query: 481 LNASQVYAVKSVLQ-RPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQ 539
LN Q A+ +L + +LI G PGTGKT T V + +G +L+ + +N AVD
Sbjct: 907 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGSS-ILLASYTNSAVDN 965
Query: 540 LAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGEL 599
L K+ + G++ +R+ EAV H +VR
Sbjct: 966 LLIKLKAQGIEFLRIGRD--EAV---------HEEVR----------------------- 991
Query: 600 SSSDEKKYKALKRATEREISQSAD---VICCTCVGAGDPRLANFRFRQVLIDESTQATEP 656
E + A+ + +I + D V+ TC+G P L N RF +IDE+ Q P
Sbjct: 992 ----ESCFSAMNMCSVEDIKKKLDQVKVVASTCLGINSPLLVNRRFDVCIIDEAGQIALP 1047
Query: 657 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 693
+ PL+ A VLVGDH QL P++ +A G+
Sbjct: 1048 VSIGPLLF-ASTFVLVGDHYQLPPLVQSTEARENGMG 1083
>AT1G08840.1 | Symbols: emb2411 | DNA replication helicase, putative |
chr1:2829579-2838369 REVERSE LENGTH=1296
Length = 1296
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 44/217 (20%)
Query: 481 LNASQVYAVKSVLQ-RPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQ 539
LN Q A+ +L + +LI G PGTGKT T V + +G +L+ + +N AVD
Sbjct: 888 LNNDQRQAILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGSS-ILLASYTNSAVDN 946
Query: 540 LAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGEL 599
L K+ + G++ +R+ EAV H +VR
Sbjct: 947 LLIKLKAQGIEFLRIGRD--EAV---------HEEVR----------------------- 972
Query: 600 SSSDEKKYKALKRATEREISQSAD---VICCTCVGAGDPRLANFRFRQVLIDESTQATEP 656
E + A+ + +I + D V+ TC+G P L N RF +IDE+ Q P
Sbjct: 973 ----ESCFSAMNMCSVEDIKKKLDQVKVVASTCLGINSPLLVNRRFDVCIIDEAGQIALP 1028
Query: 657 ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLA 693
+ PL+ A VLVGDH QL P++ +A G+
Sbjct: 1029 VSIGPLLF-ASTFVLVGDHYQLPPLVQSTEARENGMG 1064
>AT4G15570.1 | Symbols: MAA3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr4:8893043-8898858 FORWARD LENGTH=818
Length = 818
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 34/189 (17%)
Query: 516 VYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGL----------KVVRLCAKSREAVSS- 564
V + +++ + +VLVCAPSN A+D++ ++ S+GL K+VR+ K+ +V+S
Sbjct: 366 VVNASRKYRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASV 425
Query: 565 PVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADV 624
++HL + +D K +QG + + A I + A +
Sbjct: 426 SLDHLVAQKRGSAID-------------KPKQGTTGTDIDSIRTA--------ILEEAAI 464
Query: 625 ICCTCVGAGDPRLA--NFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 682
+ T +G LA N F V+IDE+ QA EP LIPL KQV LVGD QL +
Sbjct: 465 VFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLATRCKQVFLVGDPKQLPATV 524
Query: 683 MCKKAARAG 691
+ A +G
Sbjct: 525 ISTVAQDSG 533
>AT5G37160.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14705426-14708376
FORWARD LENGTH=871
Length = 871
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 480 ELNASQVYAVKSVLQ-------RPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAP 532
+LN+SQ A+ L+ + LI GPPGTGKT T A L+ + Q + + +VCAP
Sbjct: 243 KLNSSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLM-QLKCKTVVCAP 301
Query: 533 SNVAVDQLAEKISSTGLKVVRLCAKSREAVS---SPVEHLTLHY 573
+N + +A ++ S + + +CA + A++ S E TL Y
Sbjct: 302 TNTTIVAVASRLLSLSKETI-VCAPTNSAIAEVVSRFEFSTLFY 344
>AT5G37150.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:14701330-14704562
FORWARD LENGTH=839
Length = 839
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 480 ELNASQVYAVKSVLQ-------RPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAP 532
+LN+SQ A+ L+ + LI GPPGTGKT T A L++ + K + + +VCAP
Sbjct: 220 KLNSSQEDAILGCLETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKL-RCKTVVCAP 278
Query: 533 SNVAVDQLAEKISS 546
+N A+ Q+A ++ S
Sbjct: 279 TNTAIVQVASRLLS 292