Miyakogusa Predicted Gene

Lj2g3v1984950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984950.1 Non Chatacterized Hit- tr|I3SGA6|I3SGA6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,93.18,0,no
description,RNA polymerase Rpb7, N-terminal; no description,Nucleic
acid-binding, OB-fold; DNA-DI,CUFF.38217.1
         (176 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II | ...   325   1e-89
AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-termi...    75   3e-14
AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-termi...    72   2e-13
AT1G06790.1 | Symbols:  | RNA polymerase Rpb7 N-terminal domain-...    50   5e-07
AT1G06790.2 | Symbols:  | RNA polymerase Rpb7 N-terminal domain-...    50   7e-07
AT4G14520.3 | Symbols:  | DNA-directed RNA polymerase II-related...    50   1e-06
AT4G14520.2 | Symbols:  | DNA-directed RNA polymerase II-related...    50   1e-06
AT4G14520.1 | Symbols:  | DNA-directed RNA polymerase II-related...    50   1e-06

>AT5G59180.1 | Symbols: NRPB7 | DNA-directed RNA polymerase II |
           chr5:23883499-23884976 FORWARD LENGTH=176
          Length = 176

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 154/175 (88%), Positives = 166/175 (94%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MFFHIVLERNMQLHPR+FGRNL++NLV+KLMKDVEGTCSGRHGFVVA+TGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTG VTFPVKY+CVVFRPFKGE+LEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVT 175
           +GDMPNYTTSD SVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP  
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAA 175


>AT4G14660.1 | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr4:8406500-8407036 REVERSE LENGTH=178
          Length = 178

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 96/179 (53%), Gaps = 9/179 (5%)

Query: 1   MFFHIVLERNMQLHPRYF---GRNLRDNLVAKLMKDVEGTCSGRH-GFVVAVTGIEDIGK 56
           MF  + L  N+ +        G  L+  ++ +L++      + +  G+ VAVT ++ IG+
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 57  GLILDGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
           G I + TG V FPV +  + F+ FKGE++  VV  V K G F   GP++ +++S   +P 
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMP- 119

Query: 116 DMEFQSGDMPNYTTSDASVKIQKDSEVRLKIIGTRVDAT--EIFCIGTIKDDFLGVIND 172
           D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + +++ D+LG +++
Sbjct: 120 DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSE 177


>AT3G22900.1 | Symbols: NRPD7 | RNA polymerase Rpb7-like, N-terminal
           domain | chr3:8115645-8116169 FORWARD LENGTH=174
          Length = 174

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 19  GRNLRDNLVAKLMKDVEGTCSGRH-GFVVAVTGIEDIGKGLILDGTGSVTFPVKYRCVVF 77
           G  L+  +V +L++      + +  G+++  T +E+IG+G I + TG + FPV +  + F
Sbjct: 21  GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGEGKIKEQTGEIQFPVVFNGICF 80

Query: 78  RPFKGEVLEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDASVKIQ 137
           + FKGE++  VV  V+K G F ++GP +I   +H+     EF  G+ P +     S +IQ
Sbjct: 81  KMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQ 139

Query: 138 KDSEVRLKIIGTRVDATE--IFCIGTIKDDFLG 168
             + VR  ++ T     E     + +I  D LG
Sbjct: 140 IGARVRFVVLDTEWREAEKDFMALASIDGDNLG 172


>AT1G06790.1 | Symbols:  | RNA polymerase Rpb7 N-terminal
           domain-containing protein | chr1:2087645-2089287 FORWARD
           LENGTH=204
          Length = 204

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MF+   LE ++++ P      L D + + L            G  V++  I+ +  G +L
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNK------MGFFAEAGPVQIFVSNHLIP 114
            G G+ T+ V  R VVFRPF GEV+ A     +       +GFF +     I+V   L+P
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDD-----IYVPAPLMP 115


>AT1G06790.2 | Symbols:  | RNA polymerase Rpb7 N-terminal
           domain-containing protein | chr1:2087645-2089039 FORWARD
           LENGTH=189
          Length = 189

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVAKLMKDVEGTCSGRHGFVVAVTGIEDIGKGLIL 60
           MF+   LE ++++ P      L D + + L            G  V++  I+ +  G +L
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  DGTGSVTFPVKYRCVVFRPFKGEVLEAVVTMVNK------MGFFAEAGPVQIFVSNHLIP 114
            G G+ T+ V  R VVFRPF GEV+ A     +       +GFF +     I+V   L+P
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDD-----IYVPAPLMP 115


>AT4G14520.3 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 1   MFFHIVLERNMQLHPRYF-GRNLRDNLVAKLMKDV--EGTCSGRHGFVVAVTGIEDIGKG 57
           MF  + + R++ +  ++  G++    ++ +L++D+  E  C   HGF + +T ++ IG  
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59

Query: 58  LILDGTGS-------VTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQI-FVS 109
              +           +TFPV + C  F P +G++L+  V  V   G F  +GP++  ++S
Sbjct: 60  KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119

Query: 110 NHLIPDDMEFQS----GDMPNYTTSDASVKIQKDSEVRLKIIGTR 150
              +P      S     + P++   D S KI     VR +++  R
Sbjct: 120 LLKMPHYHYVHSPLSEDEKPHFQKDDLS-KIAVGVVVRFQVLAVR 163


>AT4G14520.2 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 1   MFFHIVLERNMQLHPRYF-GRNLRDNLVAKLMKDV--EGTCSGRHGFVVAVTGIEDIGKG 57
           MF  + + R++ +  ++  G++    ++ +L++D+  E  C   HGF + +T ++ IG  
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59

Query: 58  LILDGTGS-------VTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQI-FVS 109
              +           +TFPV + C  F P +G++L+  V  V   G F  +GP++  ++S
Sbjct: 60  KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119

Query: 110 NHLIPDDMEFQS----GDMPNYTTSDASVKIQKDSEVRLKIIGTR 150
              +P      S     + P++   D S KI     VR +++  R
Sbjct: 120 LLKMPHYHYVHSPLSEDEKPHFQKDDLS-KIAVGVVVRFQVLAVR 163


>AT4G14520.1 | Symbols:  | DNA-directed RNA polymerase II-related |
           chr4:8342471-8343073 FORWARD LENGTH=200
          Length = 200

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 17/165 (10%)

Query: 1   MFFHIVLERNMQLHPRYF-GRNLRDNLVAKLMKDV--EGTCSGRHGFVVAVTGIEDIGKG 57
           MF  + + R++ +  ++  G++    ++ +L++D+  E  C   HGF + +T ++ IG  
Sbjct: 1   MFSEVEMARDVAICAKHLNGQSPHQPILCRLLQDLIHEKACR-EHGFYLGITALKSIGNN 59

Query: 58  LILDGTGS-------VTFPVKYRCVVFRPFKGEVLEAVVTMVNKMGFFAEAGPVQI-FVS 109
              +           +TFPV + C  F P +G++L+  V  V   G F  +GP++  ++S
Sbjct: 60  KNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYLS 119

Query: 110 NHLIPDDMEFQS----GDMPNYTTSDASVKIQKDSEVRLKIIGTR 150
              +P      S     + P++   D S KI     VR +++  R
Sbjct: 120 LLKMPHYHYVHSPLSEDEKPHFQKDDLS-KIAVGVVVRFQVLAVR 163