Miyakogusa Predicted Gene

Lj2g3v1984720.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1984720.1 Non Chatacterized Hit- tr|O49683|O49683_ARATH
Putative uncharacterized protein AT4g17840
OS=Arabidop,57.28,3e-18,seg,NULL; coiled-coil,NULL,CUFF.38235.1
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17840.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    62   6e-11
AT2G35260.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    59   9e-10

>AT4G17840.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast, membrane; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Abortive infection protein
           (InterPro:IPR003675); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G35260.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr4:9918222-9920190 REVERSE
           LENGTH=422
          Length = 422

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 33/103 (32%)

Query: 1   MKKIYSPXXXXXXXXXXGFEWIQVILFNFTSFLNVVYLRLQMMKLISVLFGMLVWQTNNI 60
           MKKIYSP          GFEWIQ                                 TNN+
Sbjct: 351 MKKIYSPLLEGLLGLYLGFEWIQ---------------------------------TNNL 377

Query: 61  LAPIITHGIYSTVILGHGLWKINDHXXXXXXXXXXXKSEEQNS 103
           LAPIITHGIYS V+LG+GLWK++ H           ++E  N+
Sbjct: 378 LAPIITHGIYSAVVLGNGLWKLHHHQQRLRLRVQKLETEGDNN 420


>AT2G35260.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT4G17840.1); Has 42 Blast
           hits to 42 proteins in 14 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr2:14849642-14851601 FORWARD LENGTH=382
          Length = 382

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 36/81 (44%), Gaps = 33/81 (40%)

Query: 1   MKKIYSPXXXXXXXXXXGFEWIQVILFNFTSFLNVVYLRLQMMKLISVLFGMLVWQTNNI 60
           MKKIYSP          G EW+Q                                 T+NI
Sbjct: 311 MKKIYSPLLEGLLALYLGIEWVQ---------------------------------TDNI 337

Query: 61  LAPIITHGIYSTVILGHGLWK 81
           LAP++THGIYS VILGHGLWK
Sbjct: 338 LAPMMTHGIYSAVILGHGLWK 358